SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research


Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma08g24080): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma08g24080): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma08g24080

Feature Type:gene_model
Chromosome:Gm08
Start:18310689
stop:18311355
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g24080
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G24400AT Annotation by Michelle Graham. TAIR10: SAUR-like auxin-responsive protein family | chr2:10377993-10378529 REVERSE LENGTH=178 SoyBaseE_val: 2.00E-51ISS
GO:0009733GO-bp Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus SoyBaseN/AISS
GO:0005575GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cellular component SoyBaseN/AISS
GO:0005516GO-mf Annotation by Michelle Graham. GO Molecular Function: calmodulin binding SoyBaseN/AISS
PF02519PFAM Auxin responsive protein JGI ISS
UniRef100_B9RHU1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Indole-3-acetic acid-induced protein ARG7, putative n=1 Tax=Ricinus communis RepID=B9RHU1_RICCO SoyBaseE_val: 3.00E-65ISS
UniRef100_I1KVU7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KVU7_SOYBN SoyBaseE_val: 3.00E-100ISS

Expression Patterns of Glyma08g24080
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g24080 not represented in the dataset
Glyma08g24080 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g24080
ParalogEvidenceComments
Glyma07g00370 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g24080 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g225100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g24080
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g24080
>Glyma08g24080.1   sequence type=CDS   gene model=Glyma08g24080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTCAAAGAAGTGTAACAAGATCAGAGAAGTTGTTAGGCTTCAACAAATCCTCAAGAAATGGAAGAAAGTTGCAACTGCTTCCAACAACAACAACAACAGCTCCAGCAGTAAAGGCATCAAGTTTTTGAAGCGAACCCTTTCATTCACAGATGTTTCTTCCACCAACACCAATCAAGACATCGTTCCAAAAGGGTTCCTTGCTGTTTGTGTAGGGAAAGAGCTCAAGAGATTCATTATTCCCACGGATTACTTGAGACACCAAGCTTTTGAGATGTTGCTCCAAGAAGCAGAAGAGGAATTTGGTTTCCAGCAAGAGGGTGTCCTCAAAATCCCATGCCAAGTATCAGTCTTCGAGAAAATATTGAATGCCGTGGAAGACAACAAACAACCCTTGGATGAGTTTGGCTTCAATGCGTCTGATTGTGAAGTCACTTCCCCTCATCATGCTCAACCGTGTACATAG
Predicted protein sequences of Glyma08g24080
>Glyma08g24080.1   sequence type=predicted peptide   gene model=Glyma08g24080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSKKCNKIREVVRLQQILKKWKKVATASNNNNNSSSSKGIKFLKRTLSFTDVSSTNTNQDIVPKGFLAVCVGKELKRFIIPTDYLRHQAFEMLLQEAEEEFGFQQEGVLKIPCQVSVFEKILNAVEDNKQPLDEFGFNASDCEVTSPHHAQPCT*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo