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Report for Sequence Feature Glyma08g24010

Feature Type:gene_model
Chromosome:Gm08
Start:18274270
stop:18276344
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g24010
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G46910AT Annotation by Michelle Graham. TAIR10: Plastid-lipid associated protein PAP / fibrillin family protein | chr2:19272427-19273856 FORWARD LENGTH=284 SoyBaseE_val: 2.00E-84ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0010287GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plastoglobule SoyBaseN/AISS
GO:0005198GO-mf Annotation by Michelle Graham. GO Molecular Function: structural molecule activity SoyBaseN/AISS
PF04755PFAM PAP fibrillin JGI ISS
UniRef100_B9RMZ6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Structural molecule, putative n=1 Tax=Ricinus communis RepID=B9RMZ6_RICCO SoyBaseE_val: 1.00E-86ISS
UniRef100_I1KVU1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KVU1_SOYBN SoyBaseE_val: 2.00E-121ISS

Expression Patterns of Glyma08g24010
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g24010 not represented in the dataset
Glyma08g24010 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g24010
ParalogEvidenceComments
Glyma07g00410 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g24010 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g224600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g24010
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g24010
>Glyma08g24010.2   sequence type=CDS   gene model=Glyma08g24010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTTGGCTTTTCATTCAGCCCTGTACCCAGCATCTCTGTCTTGTCGAGCGAGGAGGTTGTCCTTGGTGCCTTGTGCATTGAAGACACGCTCTTGTATCGAGGAGGCTCTGGTGAGTGTGGAAGCATGCAACATGGCATCTCACCCTATCAATTTCTCCAAGTTGGATGGAACATGGCGCCTCCAGTACACTTCTTCCTCTGATGTTCTCGTTCTTCTCCAAGCTGCTGCTACACTTCCTTTCTTTCAAGTTGGACAGATCTTTCAAAAATTTGAATGTGGTGATCAATCCCATGGAGGTGTTATCCGCAATGTTGTTCGATGGAGTATTCCAAATTTGTTAGAGGAACAAGAAGGTGCTACACTGCTTGTATCCGCCAAGTTTAATGTTGTATCTGTCCGTAATATCTACCTTCAGTTTCAAGAGATCACAGTCCAAGATATATATATTAGTGAAGAGCTGCGGGCTCTGATAGCTCCAGCAATACTACCGAGATCTTTTATAAGTCTTCAGGTCCGCCACTGCGGAGGACTATATTACCTTAGTTATTTGGATGATAATATGCTTTTGGGTCGTGCTGTTGGCGGGGGAGGGATGTTTGTGTTTTCAAGAGCCCAATCTCCCTACTGA
Predicted protein sequences of Glyma08g24010
>Glyma08g24010.2   sequence type=predicted peptide   gene model=Glyma08g24010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MELAFHSALYPASLSCRARRLSLVPCALKTRSCIEEALVSVEACNMASHPINFSKLDGTWRLQYTSSSDVLVLLQAAATLPFFQVGQIFQKFECGDQSHGGVIRNVVRWSIPNLLEEQEGATLLVSAKFNVVSVRNIYLQFQEITVQDIYISEELRALIAPAILPRSFISLQVRHCGGLYYLSYLDDNMLLGRAVGGGGMFVFSRAQSPY*






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