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Report for Sequence Feature Glyma08g24000

Feature Type:gene_model
Chromosome:Gm08
Start:18269098
stop:18273128
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G19990AT Annotation by Michelle Graham. TAIR10: regulatory particle triple-A ATPase 6A | chr5:6752144-6754918 FORWARD LENGTH=419 SoyBaseE_val: 0ISS
GO:0006511GO-bp Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0030163GO-bp Annotation by Michelle Graham. GO Biological Process: protein catabolic process SoyBaseN/AISS
GO:0000502GO-cc Annotation by Michelle Graham. GO Cellular Compartment: proteasome complex SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0008540GO-cc Annotation by Michelle Graham. GO Cellular Compartment: proteasome regulatory particle, base subcomplex SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016787GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity SoyBaseN/AISS
GO:0016887GO-mf Annotation by Michelle Graham. GO Molecular Function: ATPase activity SoyBaseN/AISS
GO:0017111GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity SoyBaseN/AISS
KOG0728 KOG 26S proteasome regulatory complex, ATPase RPT6 JGI ISS
PTHR23073Panther 26S PROTEASE REGULATORY SUBUNIT JGI ISS
PTHR23073:SF12Panther 26S PROTEASE REGULATORY SUBUNIT 8 JGI ISS
PF00004PFAM ATPase family associated with various cellular activities (AAA) JGI ISS
UniRef100_C6TE07UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TE07_SOYBN SoyBaseE_val: 0ISS
UniRef100_D7LZD9UniRef Annotation by Michelle Graham. Most informative UniRef hit: ATSUG1 n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LZD9_ARALL SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g24000 not represented in the dataset

Glyma08g24000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma07g00420 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g224500 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma08g24000.1   sequence type=CDS   gene model=Glyma08g24000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCTGGTCGGAGTTGAAGTGAAGCATGCGGCGGAGGGCGCACCGGAGGAGAATTGCTCCGCCAAGCCCACCAAGCAGGGCGAGGGCCTCCGCCACTACTATTCTCACAACATCCACGAGCATCAGCTCCTTCTCCGTCAAAAGACGCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAGGTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATTACAAAGATTACTCCATCCACTAGAGTTGCACTTCGCAACGACAGTTATGTTCTTCACTTAGTTCTGCCAAGTAAAGTTGATCCATTGGTCAATCTGATGAAAGTTGAGAAGGTTCCCGATTCTACTTACGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAGGTCATTGAGTTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATTGCACAACCAAAGGGTGTCCTGCTCTATGGGCCACCTGGTACAGGAAAAACATTGTTGGCTAGGGCAGTGGCTCATCATACTGACTGTACATTCATCAGGGTGTCTGGTTCTGAATTAGTTCAGAAATACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCAGGGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATCTGCTCGGATGGAATCTGGAAGTGGCAATGGTGATAGTGAGGTACAGCGTACTATGCTGGAACTTCTCAATCAGTTGGATGGATTTGAAGCTTCAAACAAGATCAAGGTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAGTCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGTGGCATTGATCTGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAGGCTGTTTGCACCGAAGCTGGAATGTTTGCATTGAGGGAGCGGAGGGTACACGTGACTCAGGAGGATTTTGAGATGGCTGTGGCCAAGGTGATGAAAAAGGAGACTGAAAAAAACATGTCATTGCGGAAGTTGTGGAAGTGA

>Glyma08g24000.1   sequence type=predicted peptide   gene model=Glyma08g24000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALVGVEVKHAAEGAPEENCSAKPTKQGEGLRHYYSHNIHEHQLLLRQKTHNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVDIDKSIDITKITPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDFEMAVAKVMKKETEKNMSLRKLWK*







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