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Report for Sequence Feature Glyma08g23990
Feature Type: gene_model
Chromosome: Gm08
Start: 18261820
stop: 18267564
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g23990
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G78900 AT
Annotation by Michelle Graham. TAIR10: vacuolar ATP synthase subunit A | chr1:29660463-29664575 FORWARD LENGTH=623
SoyBase E_val: 0 ISS
GO:0000902 GO-bp
Annotation by Michelle Graham. GO Biological Process: cell morphogenesis
SoyBase N/A ISS
GO:0006007 GO-bp
Annotation by Michelle Graham. GO Biological Process: glucose catabolic process
SoyBase N/A ISS
GO:0006094 GO-bp
Annotation by Michelle Graham. GO Biological Process: gluconeogenesis
SoyBase N/A ISS
GO:0006096 GO-bp
Annotation by Michelle Graham. GO Biological Process: glycolysis
SoyBase N/A ISS
GO:0006098 GO-bp
Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt
SoyBase N/A ISS
GO:0006816 GO-bp
Annotation by Michelle Graham. GO Biological Process: calcium ion transport
SoyBase N/A ISS
GO:0006833 GO-bp
Annotation by Michelle Graham. GO Biological Process: water transport
SoyBase N/A ISS
GO:0006972 GO-bp
Annotation by Michelle Graham. GO Biological Process: hyperosmotic response
SoyBase N/A ISS
GO:0007010 GO-bp
Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization
SoyBase N/A ISS
GO:0007030 GO-bp
Annotation by Michelle Graham. GO Biological Process: Golgi organization
SoyBase N/A ISS
GO:0007033 GO-bp
Annotation by Michelle Graham. GO Biological Process: vacuole organization
SoyBase N/A ISS
GO:0009266 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus
SoyBase N/A ISS
GO:0009555 GO-bp
Annotation by Michelle Graham. GO Biological Process: pollen development
SoyBase N/A ISS
GO:0009651 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to salt stress
SoyBase N/A ISS
GO:0010498 GO-bp
Annotation by Michelle Graham. GO Biological Process: proteasomal protein catabolic process
SoyBase N/A ISS
GO:0015991 GO-bp
Annotation by Michelle Graham. GO Biological Process: ATP hydrolysis coupled proton transport
SoyBase N/A ISS
GO:0016049 GO-bp
Annotation by Michelle Graham. GO Biological Process: cell growth
SoyBase N/A ISS
GO:0046034 GO-bp
Annotation by Michelle Graham. GO Biological Process: ATP metabolic process
SoyBase N/A ISS
GO:0046686 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to cadmium ion
SoyBase N/A ISS
GO:0048193 GO-bp
Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport
SoyBase N/A ISS
GO:0000325 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plant-type vacuole
SoyBase N/A ISS
GO:0005618 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cell wall
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0005773 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: vacuole
SoyBase N/A ISS
GO:0005774 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane
SoyBase N/A ISS
GO:0005794 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0009506 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0009941 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0048046 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: apoplast
SoyBase N/A ISS
GO:0002020 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protease binding
SoyBase N/A ISS
GO:0005524 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATP binding
SoyBase N/A ISS
GO:0046933 GO-mf
Annotation by Michelle Graham. GO Molecular Function: hydrogen ion transporting ATP synthase activity, rotational mechanism
SoyBase N/A ISS
GO:0046961 GO-mf
Annotation by Michelle Graham. GO Molecular Function: proton-transporting ATPase activity, rotational mechanism
SoyBase N/A ISS
KOG1352
KOG
Vacuolar H+-ATPase V1 sector, subunit A
JGI ISS
PTHR15184 Panther
ATP SYNTHASE
JGI ISS
PTHR15184:SF7 Panther
HRCN
JGI ISS
PF00006 PFAM
ATP synthase alpha/beta family, nucleotide-binding domain
JGI ISS
PF00306 PFAM
ATP synthase alpha/beta chain, C terminal domain
JGI ISS
PF02874 PFAM
ATP synthase alpha/beta family, beta-barrel domain
JGI ISS
UniRef100_D7EYG6 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: V-H(+)-ATPase subunit A n=2 Tax=Papilionoideae RepID=D7EYG6_SOYBN
SoyBase E_val: 0 ISS
UniRef100_I1KVU0 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KVU0_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g23990
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma08g23990
Paralog Evidence Comments
Glyma07g00430 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g23990 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g224400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g23990
Coding sequences of Glyma08g23990
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g23990.1 sequence type=CDS gene model=Glyma08g23990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCCCGCCGTTTATGGAGCTCGCTTGACCACCTTCGAAGACTCCGAGAAGGAGAGTGAATACGGTTACGTTCGCAAGGTATCAGGACCAGTCGTCGTTGCAGATGGCATGGCTGGGGCTGCTATGTATGAACTCGTGCGTGTTGGTCATGATAATCTCATTGGTGAAATTATTCGTCTCGAAGGGAATTCTGCTACCATCCAAGTTTATGAGGAAACTGCTGGCTTGATGGTTAATGATCCGGTGTTACGGACTCACAAGCCTTTATCCGTGGAGTTGGGACCTGGAATACTGGGGAATATTTTCGATGGAATTCAGAGGCCTTTGAAAACTATTGCTAAACGATCTGGTGATGTCTATATTCCTCGTGGTGTCTCTGTTCCAGCACTCGACAAAGATACACTTTGGGAATTTCAACCTAAGAAAATTGGTGAAGGCGACCTTTTAACTGGTGGAGATTTATATGCTACTGTTTTTGAGAACAGTCTAATGCAACACCATATTGCACTTCCTCCTGATAACATGGGAAAGATTACCTACATTGCACCACCTGGCCAATATTCCATAAAGGATACTGTATTGGAACTTGAGTTTCAAGGTGTCAAAAAGAAATTCACCATGCTTCAGACTTGGCCCGTACGTACACCAAGGCCTGTTGCATCAAAACTTGCAGCTGATACTCCTCTTCTTACTGGTCAGCGTGTTCTTGATGCCCTTTTCCCCTCAGTTCTTGGCGGGACTTGTGCCATACCTGGAGCTTTTGGTTGTGGTAAAACTGTCATTAGTCAGGCTCTTTCTAAGTATTCCAATTCTGATGCCGTTGTTTATGTCGGCTGTGGGGAACGTGGAAATGAAATGGCAGAGGTTCTAATGGACTTTCCCCAACTTACAATGACATTACCTGATGGTCGTGAAGAATCTGTCATGAAGCGTACAACACTAGTGGCTAACACTTCAAACATGCCAGTGGCTGCTCGTGAAGCTTCAATTTATACAGGAATCACATTAGCTGAGTATTTCAGAGATATGGGTTATAATGTCAGTATGATGGCAGATTCTACATCTAGATGGGCAGAAGCATTGCGTGAAATCTCTGGACGACTGGCAGAAATGCCTGCAGATAGTGGATATCCTGCATACCTTGCTGCACGTTTAGCCTCGTTCTATGAACGTGCTGGGAAGGTAAAATGTCTTGGAGGCCCTGAACGTACAGGTAGCGTAACTATTGTTGGTGCTGTTTCGCCACCTGGAGGAGATTTCTCAGATCCTGTGACATCTGCAACCCTGAGCATAGTTCAGGTTTTCTGGGGTTTGGACAAAAAGCTTGCTCAGAGGAAGCACTTTCCTTCTGTAAACTGGCTTATTTCTTATTCAAAATACTCAACGGCACTTGAAACCTTTTATGAGCAATTTGATCCAGATTTTATCAACATTAGGACAAAGGCTCGTGAAGTTCTGCAAAGGGAAGATGACCTGAATGAAATTGTTCAGCTTGTGGGCAAGGATGCTTTAGCTGAAGGAGATAAGATCACCTTAGAAACTGCAAAGCTTTTGAGAGAGGATTATCTTGCTCAAAATGCCTTTACACCATATGACAAATTCTGCCCCTTCTACAAGTCTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAGGCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTTATCAAGCATCGTATGGGAGATCTGTTCTACCGATTAGTGTCTCAGAAATTTGAGGATCCAGCAGAAGGGGAAGCTGCTTTGGTTGCGAAATTTCAGAAGTTACATGAGGACCTGACTAATGGTTTCCGCAACCTTGAGGACGAAACCCGATGA
Predicted protein sequences of Glyma08g23990
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g23990.1 sequence type=predicted peptide gene model=Glyma08g23990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MPAVYGARLTTFEDSEKESEYGYVRKVSGPVVVADGMAGAAMYELVRVGHDNLIGEIIRLEGNSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAKRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHIALPPDNMGKITYIAPPGQYSIKDTVLELEFQGVKKKFTMLQTWPVRTPRPVASKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDAVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITLAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALETFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVERGAGSDGQKISYTLIKHRMGDLFYRLVSQKFEDPAEGEAALVAKFQKLHEDLTNGFRNLEDETR*