SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G16810 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1754, eukaryotic (InterPro:IPR013865); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:5756150-5756694 FORWARD LENGTH=144 | SoyBase | E_val: 4.00E-35 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG3410 | KOG | Conserved alpha-helical protein | JGI | ISS | |
| PTHR13282 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PTHR13282:SF6 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF08555 | PFAM | Eukaryotic family of unknown function (DUF1754) | JGI | ISS | |
| UniRef100_B9RHV1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 7-dehydrocholesterol reductase, putative n=1 Tax=Ricinus communis RepID=B9RHV1_RICCO | SoyBase | E_val: 1.00E-41 | ISS |
| UniRef100_C6T2C3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6T2C3_SOYBN | SoyBase | E_val: 4.00E-79 | ISS |
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Glyma08g23980 not represented in the dataset |
Glyma08g23980 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g00450 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g224300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g23980.2 sequence type=transcript gene model=Glyma08g23980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GATAAATTGTTTCTCTTCTCTGCAAAAAGGCGTGTCCTATTGAAAACATATTTTGGGGAAAAAAAGTATAAGAAGATTGAAATCAAATTGAGCCCTAAAGATCTCTCGTCGGACGCGGAGAGTTTCACTTTCACCCTTCGGTTCTCGTTGAAGGGAAAAGCACTGGATGTGGCTGGTGGAGTGAAGAAGAAGAAAAAGAAGAACAAGAGAAATCAGGAACAACTTCTGCAAGTCGCCGAAGATGAAGTTTCAGCAGGTGGAAATACAGAACAGGCCAAAGATCCTAATGATGGAGATATAAATGATGTGAGTGAATTAAGCGGGAAAGGGAAGACAGCCCATTATGATGATCATCTTACACCGGCGGAGAGGCGATACATAGAGCAGAGGGAGCAACTTGATGTTCACAGATTGGCTAAGATTTCTAATAAATCTCACCGTGATAGAATTCAGGATTTCAACCAATATCTTGCAAACATGAGCGAGCATTATGATATTCCTAAAGTTGGTCCTGGATGATTCAATGAAGGCCAATCCTTATCATTTGTATTTGTTCGTTAATACTACTATTAATGCCGTGTGCCCGCACAATGGTTATTGTCACTGCTTATTGATACTCTGTTTTGGATTAAGCTATATTTCATATGATAGATATATTTGGTTTCTCCTCCTGTGGATGGATAAGTATGTTATTGCCTTCGACGAAATTTCGTCATTTATTATTATTATTATTGTGCAAGAAAGGAAAAATGCATATTCTAC >Glyma08g23980.3 sequence type=transcript gene model=Glyma08g23980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GATAAATTGTTTCTCTTCTCTGCAAAAAGGCGTGTCCTATTGAAAACATATTTTGGGGAAAAAAAGTATAAGAAGATTGAAATCAAATTGAGCCCTAAAGATCTCTCGTCGGACGCGGAGAGTTTCACTTTCACCCTTCGGTTCTCGTTGAAGGGAAAAGCACTGGATGTGGCTGGTGGAGTGAAGAAGAAGAAAAAGAAGAACAAGAGAAATCAGGAACAACTTCTGCAAGTCGCCGAAGATGAAGTTTCAGCAGAACAGGCCAAAGATCCTAATGATGGAGATATAAATGATGTGAGTGAATTAAGCGGGAAAGGGAAGACAGCCCATTATGATGATCATCTTACACCGGCGGAGAGGCGATACATAGAGCAGAGGGAGCAACTTGATGTTCACAGATTGGCTAAGATTTCTAATAAATCTCACCGTGATAGAATTCAGGATTTCAACCAATATCTTGCAAACATGAGCGAGCATTATGATATTCCTAAAGTTGGTCCTGGATGATTCAATGAAGGCCAATCCTTATCATTTGTATTTGTTCGTTAATACTACTATTAATGCCGTGTGCCCGCACAATGGTTATTGTCACTGCTTATTGATACTCTGTTTTGGATTAAGCTATATTTCATATGATAGATATATTTGGTTTCTCCTCCTGTGGATGGATAAGTATGTTATTGCCTTCGACGAAATTTCGTCATTTATTATTATTATTATTGTGCAAGAAAGGAAAAATGCATATTCTAC
>Glyma08g23980.1 sequence type=CDS gene model=Glyma08g23980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCAGCGTTTGACAATGTTGTTGGTGGGAAATTGAAGTTGAAGGGAAAAGCACTGGATGTGGCTGGTGGAGTGAAGAAGAAGAAAAAGAAGAACAAGAGAAATCAGGAACAACTTCTGCAAGTCGCCGAAGATGAAGTTTCAGCAGGTGGAAATACAGAACAGGCCAAAGATCCTAATGATGGAGATATAAATGATGTGAGTGAATTAAGCGGGAAAGGGAAGACAGCCCATTATGATGATCATCTTACACCGGCGGAGAGGCGATACATAGAGCAGAGGGAGCAACTTGATGTTCACAGATTGGCTAAGATTTCTAATAAATCTCACCGTGATAGAATTCAGGATTTCAACCAATATCTTGCAAACATGAGCGAGCATTATGATATTCCTAAAGTTGGTCCTGGATGA >Glyma08g23980.2 sequence type=CDS gene model=Glyma08g23980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GATAAATTGTTTCTCTTCTCTGCAAAAAGGCGTGTCCTATTGAAAACATATTTTGGGGAAAAAAAGTATAAGAAGATTGAAATCAAATTGAGCCCTAAAGATCTCTCGTCGGACGCGGAGAGTTTCACTTTCACCCTTCGGTTCTCGTTGAAGGGAAAAGCACTGGATGTGGCTGGTGGAGTGAAGAAGAAGAAAAAGAAGAACAAGAGAAATCAGGAACAACTTCTGCAAGTCGCCGAAGATGAAGTTTCAGCAGGTGGAAATACAGAACAGGCCAAAGATCCTAATGATGGAGATATAAATGATGTGAGTGAATTAAGCGGGAAAGGGAAGACAGCCCATTATGATGATCATCTTACACCGGCGGAGAGGCGATACATAGAGCAGAGGGAGCAACTTGATGTTCACAGATTGGCTAAGATTTCTAATAAATCTCACCGTGATAGAATTCAGGATTTCAACCAATATCTTGCAAACATGAGCGAGCATTATGATATTCCTAAAGTTGGTCCTGGATGA >Glyma08g23980.3 sequence type=CDS gene model=Glyma08g23980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GATAAATTGTTTCTCTTCTCTGCAAAAAGGCGTGTCCTATTGAAAACATATTTTGGGGAAAAAAAGTATAAGAAGATTGAAATCAAATTGAGCCCTAAAGATCTCTCGTCGGACGCGGAGAGTTTCACTTTCACCCTTCGGTTCTCGTTGAAGGGAAAAGCACTGGATGTGGCTGGTGGAGTGAAGAAGAAGAAAAAGAAGAACAAGAGAAATCAGGAACAACTTCTGCAAGTCGCCGAAGATGAAGTTTCAGCAGAACAGGCCAAAGATCCTAATGATGGAGATATAAATGATGTGAGTGAATTAAGCGGGAAAGGGAAGACAGCCCATTATGATGATCATCTTACACCGGCGGAGAGGCGATACATAGAGCAGAGGGAGCAACTTGATGTTCACAGATTGGCTAAGATTTCTAATAAATCTCACCGTGATAGAATTCAGGATTTCAACCAATATCTTGCAAACATGAGCGAGCATTATGATATTCCTAAAGTTGGTCCTGGATGA
>Glyma08g23980.1 sequence type=predicted peptide gene model=Glyma08g23980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSAFDNVVGGKLKLKGKALDVAGGVKKKKKKNKRNQEQLLQVAEDEVSAGGNTEQAKDPNDGDINDVSELSGKGKTAHYDDHLTPAERRYIEQREQLDVHRLAKISNKSHRDRIQDFNQYLANMSEHYDIPKVGPG* >Glyma08g23980.2 sequence type=predicted peptide gene model=Glyma08g23980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high DKLFLFSAKRRVLLKTYFGEKKYKKIEIKLSPKDLSSDAESFTFTLRFSLKGKALDVAGGVKKKKKKNKRNQEQLLQVAEDEVSAGGNTEQAKDPNDGDINDVSELSGKGKTAHYDDHLTPAERRYIEQREQLDVHRLAKISNKSHRDRIQDFNQYLANMSEHYDIPKVGPG* >Glyma08g23980.3 sequence type=predicted peptide gene model=Glyma08g23980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high DKLFLFSAKRRVLLKTYFGEKKYKKIEIKLSPKDLSSDAESFTFTLRFSLKGKALDVAGGVKKKKKKNKRNQEQLLQVAEDEVSAEQAKDPNDGDINDVSELSGKGKTAHYDDHLTPAERRYIEQREQLDVHRLAKISNKSHRDRIQDFNQYLANMSEHYDIPKVGPG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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