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Report for Sequence Feature Glyma08g23970

Feature Type:gene_model
Chromosome:Gm08
Start:18252964
stop:18256972
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G50430AT Annotation by Michelle Graham. TAIR10: Ergosterol biosynthesis ERG4/ERG24 family | chr1:18682175-18685555 REVERSE LENGTH=432 SoyBaseE_val: 0ISS
GO:0006084GO-bp Annotation by Michelle Graham. GO Biological Process: acetyl-CoA metabolic process SoyBaseN/AISS
GO:0009826GO-bp Annotation by Michelle Graham. GO Biological Process: unidimensional cell growth SoyBaseN/AISS
GO:0016126GO-bp Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process SoyBaseN/AISS
GO:0016132GO-bp Annotation by Michelle Graham. GO Biological Process: brassinosteroid biosynthetic process SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0030176GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to endoplasmic reticulum membrane SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0009918GO-mf Annotation by Michelle Graham. GO Molecular Function: sterol delta7 reductase activity SoyBaseN/AISS
GO:0016628GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor SoyBaseN/AISS
KOG1435 KOG Sterol reductase/lamin B receptor JGI ISS
PTHR21257Panther STEROL REDUCTASE-RELATED JGI ISS
PTHR21257:SF27Panther JGI ISS
PF01222PFAM Ergosterol biosynthesis ERG4/ERG24 family JGI ISS
UniRef100_C6TIU6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=C6TIU6_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q2QCX7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Sterol delta-7 reductase DWF5 n=1 Tax=Gossypium hirsutum RepID=Q2QCX7_GOSHI SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g23970 not represented in the dataset

Glyma08g23970 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma07g00460 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g224200 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma08g23970.2   sequence type=transcript   gene model=Glyma08g23970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAAAAAGAGGGAAGTGGAAGTGTGGGGGAGGGGGCAGAGACTGATATATGGTATGGTCGTCTCTGAGTCTGAAGATCTGTGAGTTAATTGCATTTGCAGAGAGAGAGAGAGAGAGAGAGGGAAGACGGTTGTGGGGATTCGATGGGGGCCACCGTTCACTCGCCGCTAGTCACTTATGCTTCCGTCATATCTCTGCTTACACTCTGTCCTCCGTTTGTCATACTTCTATGGTACACCATGACTCTTGCTGACGGATCTGTTTCCGAGACATTCCATTATTTAAGGCAGAATGGGTTGCAGGGTTTGCTACATATATGGCCCACCCCCACTCCCACCGCCTGCAAAATCATTGCAGTCTATGCTGCATTTGAGGCAGCACTTCAGCTTCTTCTTCCCGGGAAAACCGTTTACGGCCCTATTTCTCCAACCGGCCACCGACCTGTCTACAAGGCAAATGGTCTGCAAGCCTATTTTGTCACCTTGATTACTTATTTTGCTCTCTGGTGGTTTGGGATATTCAACCCTACGATTGTTTATCATCATTTGGGAGAAATTTATTCAGCTCTCATCTTCGGCAGCTTTCTCTTCTGTGTTTTCTTGTACATCAAGGGTCATTTGGCACCGTCTTCTACAGATTCTGGCTCATCTGGAAACTTAATCATTGATTTTTACTGGGGGATGGAACTTTATCCACGCATTGGAAAACATTTTGACATAAAAGTCTTCACAAACTGCAGATTTGGAATGATGTCATGGGCTGTTCTTGCACTGACCTACTGCATAAAGCAGTATGAAGAAAATGGAAAAGTAGCGGACTCAATGCTTGTAAATACTGCATTAATGCTGGTATATGTTACCAAGTTTTTCTGGTGGGAAGCTGGATATTGGAGCACAATGGATATTGCACATGATCGAGCTGGATTTTATATTTGCTGGGGTTGCTTGGTGTGGGTTCCATCTGTTTATACGTCTCCTGGAATGTACCTTGTCAACCATCCTGTAAATCTTGGCATCAAGCTAGCGCTCTCAATTTTAGTAGCTGGCATTCTTTGCATATACATCAACTATGATTGTGACAGGCAAAGGCAAGAATTTCGTAGGACAAATGGAAAAGGCACAGTCTGGGGAAAAGCTCCTTCAAAGATAGAGGCCACATATACTACTACTTCTGGGGAAACTAAAAGAAGCCTTCTTTTAACCTCTGGATGGTAAGCTTTCACTTAAATTTCTGTTTGATTACAGACCATACCTGCCTCTTCTCCCGATTGAGGAGTTTAACTCGTCACTTGTTGGGCCTGATTCTGGACATTTGATTTAAAATAGATCATAATTCTATAAAAAGTTTATATTGATAGTTTACATTCAGATATGAATGTTATTTGGAGTAATGATACACAAACATCCTCTTCTTTTAAACACTCTATCAACACTTATCATTTTTCTCTTCTTATCACATCATAAATCTTATAATACCTATGTTATTTTTTCTCTTTTTCTTCTCTCTCTAGGTGTTCATGGCATAATGGGTGTTCATCAAATATATTTTCCAATAATTAATTCACTTTTACTGTGGTGCTTGCAGGTGGGGATTATCTCGTCACTTTCATTATGTCCCTGAAATACTGGCAGCTTTCTTCTGGACAGTCCCAGCTCTTTTCGAACATGTAAGGGTCCCTTTCTCTTTGTACAAGTTGAAGTTTGGAGA

>Glyma08g23970.3   sequence type=transcript   gene model=Glyma08g23970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAAAAAGAGGGAAGTGGAAGTGTGGGGGAGGGGGCAGAGACTGATATATGGTATGGTCGTCTCTGAGTCTGAAGATCTGTGAGTTAATTGCATTTGCAGAGAGAGAGAGAGAGAGAGAGGGAAGACGGTTGTGGGGATTCGATGGGGGCCACCGTTCACTCGCCGCTAGTCACTTATGCTTCCGTCATATCTCTGCTTACACTCTGTCCTCCGTTTGTCATACTTCTATGGTACACCATGACTCTTGCTGACGGATCTGTTTCCGAGACATTCCATTATTTAAGGCAGAATGGGTTGCAGGGTTTGCTACATATATGGCCCACCCCCACTCCCACCGCCTGCAAAATCATTGCAGTCTATGCTGCATTTGAGGCAGCACTTCAGCTTCTTCTTCCCGGGAAAACCGTTTACGGCCCTATTTCTCCAACCGGCCACCGACCTGTCTACAAGGCAAATGGTCTGCAAGCCTATTTTGTCACCTTGATTACTTATTTTGCTCTCTGGTGGTTTGGGATATTCAACCCTACGATTGTTTATCATCATTTGGGAGAAATTTATTCAGCTCTCATCTTCGGCAGCTTTCTCTTCTGTGTTTTCTTGTACATCAAGGGTCATTTGGCACCGTCTTCTACAGATTCTGGCTCATCTGGAAACTTAATCATTGATTTTTACTGGGGGATGGAACTTTATCCACGCATTGGAAAACATTTTGACATAAAAGTCTTCACAAACTGCAGATTTGGAATGATGTCATGGGCTGTTCTTGCACTGACCTACTGCATAAAGCAGTATGAAGAAAATGGAAAAGTAGCGGACTCAATGCTTGTAAATACTGCATTAATGCTGGTATATGTTACCAAGTTTTTCTGGTGGGAAGCTGGATATTGGAGCACAATGGATATTGCACATGATCGAGCTGGATTTTATATTTGCTGGGGTTGCTTGGTGTGGGTTCCATCTGTTTATACGTCTCCTGGAATGTACCTTGTCAACCATCCTGTAAATCTTGGCATCAAGCTAGCGCTCTCAATTTTAGTAGCTGGCATTCTTTGCATATACATCAACTATGATTGTGACAGGCAAAGGCAAGAATTTCGTAGGACAAATGGAAAAGGCACAGTCTGGGGAAAAGCTCCTTCAAAGGTGGGGATTATCTCGTCACTTTCATTATGTCCCTGAAATACTGGCAGCTTTCTTCTGGACAGTCCCAGCTCTTTTCGAACATTTTTTGCCTTACTTCTACGTGATATTTCTTACCATCCTTCTCTTTGATCGAGCAAAACGAGATGATGATCGTTGCAGATCCAAGTATGGCAAGTACTGGAAACTATATTGCGACAAGGTACCTTACAGAATCATTCCAGGAATATACTGAAGAATGATTATCGAAAACGGCTTATCTGGAGTCCCCCAACTTAAAATTAAAAACCAAGGACGCCATCTGTAGCTTTATATTGTTTGGTGCCTCCTTAAGACACGTGGTAGATTAGACTTTCGCTGAGAGCTAATTATTGAATTATTGAACCGGATTTTTTAAGCTAATGTCGAGACTTGATTTCGGCTCCAGCTGTGTTAATCTCTTTATCTATGACTTGTGAGAAAGGTGCATGGTTTACGGGCTGGTGTTACAATTTGAAGTTTTATTCTGTTCCTGTTTTCTTCCCTCGCATATCATGATCCATAATCTAAAATCATCCGGTGCAAGCAGACACAATGCTTG

>Glyma08g23970.1   sequence type=CDS   gene model=Glyma08g23970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGGCCACCGTTCACTCGCCGCTAGTCACTTATGCTTCCGTCATATCTCTGCTTACACTCTGTCCTCCGTTTGTCATACTTCTATGGTACACCATGACTCTTGCTGACGGATCTGTTTCCGAGACATTCCATTATTTAAGGCAGAATGGGTTGCAGGGTTTGCTACATATATGGCCCACCCCCACTCCCACCGCCTGCAAAATCATTGCAGTCTATGCTGCATTTGAGGCAGCACTTCAGCTTCTTCTTCCCGGGAAAACCGTTTACGGCCCTATTTCTCCAACCGGCCACCGACCTGTCTACAAGGCAAATGGTCTGCAAGCCTATTTTGTCACCTTGATTACTTATTTTGCTCTCTGGTGGTTTGGGATATTCAACCCTACGATTGTTTATCATCATTTGGGAGAAATTTATTCAGCTCTCATCTTCGGCAGCTTTCTCTTCTGTGTTTTCTTGTACATCAAGGGTCATTTGGCACCGTCTTCTACAGATTCTGGCTCATCTGGAAACTTAATCATTGATTTTTACTGGGGGATGGAACTTTATCCACGCATTGGAAAACATTTTGACATAAAAGTCTTCACAAACTGCAGATTTGGAATGATGTCATGGGCTGTTCTTGCACTGACCTACTGCATAAAGCAGTATGAAGAAAATGGAAAAGTAGCGGACTCAATGCTTGTAAATACTGCATTAATGCTGGTATATGTTACCAAGTTTTTCTGGTGGGAAGCTGGATATTGGAGCACAATGGATATTGCACATGATCGAGCTGGATTTTATATTTGCTGGGGTTGCTTGGTGTGGGTTCCATCTGTTTATACGTCTCCTGGAATGTACCTTGTCAACCATCCTGTAAATCTTGGCATCAAGCTAGCGCTCTCAATTTTAGTAGCTGGCATTCTTTGCATATACATCAACTATGATTGTGACAGGCAAAGGCAAGAATTTCGTAGGACAAATGGAAAAGGCACAGTCTGGGGAAAAGCTCCTTCAAAGATAGAGGCCACATATACTACTACTTCTGGGGAAACTAAAAGAAGCCTTCTTTTAACCTCTGGATGGTGGGGATTATCTCGTCACTTTCATTATGTCCCTGAAATACTGGCAGCTTTCTTCTGGACAGTCCCAGCTCTTTTCGAACATTTTTTGCCTTACTTCTACGTGATATTTCTTACCATCCTTCTCTTTGATCGAGCAAAACGAGATGATGATCGTTGCAGATCCAAGTATGGCAAGTACTGGAAACTATATTGCGACAAGGTACCTTACAGAATCATTCCAGGAATATACTGA

>Glyma08g23970.2   sequence type=CDS   gene model=Glyma08g23970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGGCCACCGTTCACTCGCCGCTAGTCACTTATGCTTCCGTCATATCTCTGCTTACACTCTGTCCTCCGTTTGTCATACTTCTATGGTACACCATGACTCTTGCTGACGGATCTGTTTCCGAGACATTCCATTATTTAAGGCAGAATGGGTTGCAGGGTTTGCTACATATATGGCCCACCCCCACTCCCACCGCCTGCAAAATCATTGCAGTCTATGCTGCATTTGAGGCAGCACTTCAGCTTCTTCTTCCCGGGAAAACCGTTTACGGCCCTATTTCTCCAACCGGCCACCGACCTGTCTACAAGGCAAATGGTCTGCAAGCCTATTTTGTCACCTTGATTACTTATTTTGCTCTCTGGTGGTTTGGGATATTCAACCCTACGATTGTTTATCATCATTTGGGAGAAATTTATTCAGCTCTCATCTTCGGCAGCTTTCTCTTCTGTGTTTTCTTGTACATCAAGGGTCATTTGGCACCGTCTTCTACAGATTCTGGCTCATCTGGAAACTTAATCATTGATTTTTACTGGGGGATGGAACTTTATCCACGCATTGGAAAACATTTTGACATAAAAGTCTTCACAAACTGCAGATTTGGAATGATGTCATGGGCTGTTCTTGCACTGACCTACTGCATAAAGCAGTATGAAGAAAATGGAAAAGTAGCGGACTCAATGCTTGTAAATACTGCATTAATGCTGGTATATGTTACCAAGTTTTTCTGGTGGGAAGCTGGATATTGGAGCACAATGGATATTGCACATGATCGAGCTGGATTTTATATTTGCTGGGGTTGCTTGGTGTGGGTTCCATCTGTTTATACGTCTCCTGGAATGTACCTTGTCAACCATCCTGTAAATCTTGGCATCAAGCTAGCGCTCTCAATTTTAGTAGCTGGCATTCTTTGCATATACATCAACTATGATTGTGACAGGCAAAGGCAAGAATTTCGTAGGACAAATGGAAAAGGCACAGTCTGGGGAAAAGCTCCTTCAAAGATAGAGGCCACATATACTACTACTTCTGGGGAAACTAAAAGAAGCCTTCTTTTAACCTCTGGATGGTAA

>Glyma08g23970.3   sequence type=CDS   gene model=Glyma08g23970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGGCCACCGTTCACTCGCCGCTAGTCACTTATGCTTCCGTCATATCTCTGCTTACACTCTGTCCTCCGTTTGTCATACTTCTATGGTACACCATGACTCTTGCTGACGGATCTGTTTCCGAGACATTCCATTATTTAAGGCAGAATGGGTTGCAGGGTTTGCTACATATATGGCCCACCCCCACTCCCACCGCCTGCAAAATCATTGCAGTCTATGCTGCATTTGAGGCAGCACTTCAGCTTCTTCTTCCCGGGAAAACCGTTTACGGCCCTATTTCTCCAACCGGCCACCGACCTGTCTACAAGGCAAATGGTCTGCAAGCCTATTTTGTCACCTTGATTACTTATTTTGCTCTCTGGTGGTTTGGGATATTCAACCCTACGATTGTTTATCATCATTTGGGAGAAATTTATTCAGCTCTCATCTTCGGCAGCTTTCTCTTCTGTGTTTTCTTGTACATCAAGGGTCATTTGGCACCGTCTTCTACAGATTCTGGCTCATCTGGAAACTTAATCATTGATTTTTACTGGGGGATGGAACTTTATCCACGCATTGGAAAACATTTTGACATAAAAGTCTTCACAAACTGCAGATTTGGAATGATGTCATGGGCTGTTCTTGCACTGACCTACTGCATAAAGCAGTATGAAGAAAATGGAAAAGTAGCGGACTCAATGCTTGTAAATACTGCATTAATGCTGGTATATGTTACCAAGTTTTTCTGGTGGGAAGCTGGATATTGGAGCACAATGGATATTGCACATGATCGAGCTGGATTTTATATTTGCTGGGGTTGCTTGGTGTGGGTTCCATCTGTTTATACGTCTCCTGGAATGTACCTTGTCAACCATCCTGTAAATCTTGGCATCAAGCTAGCGCTCTCAATTTTAGTAGCTGGCATTCTTTGCATATACATCAACTATGATTGTGACAGGCAAAGGCAAGAATTTCGTAGGACAAATGGAAAAGGCACAGTCTGGGGAAAAGCTCCTTCAAAGGTGGGGATTATCTCGTCACTTTCATTATGTCCCTGA

>Glyma08g23970.1   sequence type=predicted peptide   gene model=Glyma08g23970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGATVHSPLVTYASVISLLTLCPPFVILLWYTMTLADGSVSETFHYLRQNGLQGLLHIWPTPTPTACKIIAVYAAFEAALQLLLPGKTVYGPISPTGHRPVYKANGLQAYFVTLITYFALWWFGIFNPTIVYHHLGEIYSALIFGSFLFCVFLYIKGHLAPSSTDSGSSGNLIIDFYWGMELYPRIGKHFDIKVFTNCRFGMMSWAVLALTYCIKQYEENGKVADSMLVNTALMLVYVTKFFWWEAGYWSTMDIAHDRAGFYICWGCLVWVPSVYTSPGMYLVNHPVNLGIKLALSILVAGILCIYINYDCDRQRQEFRRTNGKGTVWGKAPSKIEATYTTTSGETKRSLLLTSGWWGLSRHFHYVPEILAAFFWTVPALFEHFLPYFYVIFLTILLFDRAKRDDDRCRSKYGKYWKLYCDKVPYRIIPGIY*

>Glyma08g23970.2   sequence type=predicted peptide   gene model=Glyma08g23970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGATVHSPLVTYASVISLLTLCPPFVILLWYTMTLADGSVSETFHYLRQNGLQGLLHIWPTPTPTACKIIAVYAAFEAALQLLLPGKTVYGPISPTGHRPVYKANGLQAYFVTLITYFALWWFGIFNPTIVYHHLGEIYSALIFGSFLFCVFLYIKGHLAPSSTDSGSSGNLIIDFYWGMELYPRIGKHFDIKVFTNCRFGMMSWAVLALTYCIKQYEENGKVADSMLVNTALMLVYVTKFFWWEAGYWSTMDIAHDRAGFYICWGCLVWVPSVYTSPGMYLVNHPVNLGIKLALSILVAGILCIYINYDCDRQRQEFRRTNGKGTVWGKAPSKIEATYTTTSGETKRSLLLTSGW*

>Glyma08g23970.3   sequence type=predicted peptide   gene model=Glyma08g23970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGATVHSPLVTYASVISLLTLCPPFVILLWYTMTLADGSVSETFHYLRQNGLQGLLHIWPTPTPTACKIIAVYAAFEAALQLLLPGKTVYGPISPTGHRPVYKANGLQAYFVTLITYFALWWFGIFNPTIVYHHLGEIYSALIFGSFLFCVFLYIKGHLAPSSTDSGSSGNLIIDFYWGMELYPRIGKHFDIKVFTNCRFGMMSWAVLALTYCIKQYEENGKVADSMLVNTALMLVYVTKFFWWEAGYWSTMDIAHDRAGFYICWGCLVWVPSVYTSPGMYLVNHPVNLGIKLALSILVAGILCIYINYDCDRQRQEFRRTNGKGTVWGKAPSKVGIISSLSLCP*







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