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Report for Sequence Feature Glyma08g23970
Feature Type: gene_model
Chromosome: Gm08
Start: 18252964
stop: 18256972
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g23970
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G50430 AT
Annotation by Michelle Graham. TAIR10: Ergosterol biosynthesis ERG4/ERG24 family | chr1:18682175-18685555 REVERSE LENGTH=432
SoyBase E_val: 0 ISS
GO:0006084 GO-bp
Annotation by Michelle Graham. GO Biological Process: acetyl-CoA metabolic process
SoyBase N/A ISS
GO:0009826 GO-bp
Annotation by Michelle Graham. GO Biological Process: unidimensional cell growth
SoyBase N/A ISS
GO:0016126 GO-bp
Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process
SoyBase N/A ISS
GO:0016132 GO-bp
Annotation by Michelle Graham. GO Biological Process: brassinosteroid biosynthetic process
SoyBase N/A ISS
GO:0055114 GO-bp
Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005794 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0030176 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: integral to endoplasmic reticulum membrane
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
GO:0009918 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sterol delta7 reductase activity
SoyBase N/A ISS
GO:0016628 GO-mf
Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor
SoyBase N/A ISS
KOG1435
KOG
Sterol reductase/lamin B receptor
JGI ISS
PTHR21257 Panther
STEROL REDUCTASE-RELATED
JGI ISS
PTHR21257:SF27 Panther
JGI ISS
PF01222 PFAM
Ergosterol biosynthesis ERG4/ERG24 family
JGI ISS
UniRef100_C6TIU6 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=C6TIU6_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q2QCX7 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Sterol delta-7 reductase DWF5 n=1 Tax=Gossypium hirsutum RepID=Q2QCX7_GOSHI
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g23970
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma08g23970
Paralog Evidence Comments
Glyma07g00460 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g23970 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g224200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g23970
Transcripts of Glyma08g23970
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g23970.2 sequence type=transcript gene model=Glyma08g23970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
AAAAAAAAGAGGGAAGTGGAAGTGTGGGGGAGGGGGCAGAGACTGATATATGGTATGGTCGTCTCTGAGTCTGAAGATCTGTGAGTTAATTGCATTTGCAGAGAGAGAGAGAGAGAGAGAGGGAAGACGGTTGTGGGGATTCGATGGGGGCCACCGTTCACTCGCCGCTAGTCACTTATGCTTCCGTCATATCTCTGCTTACACTCTGTCCTCCGTTTGTCATACTTCTATGGTACACCATGACTCTTGCTGACGGATCTGTTTCCGAGACATTCCATTATTTAAGGCAGAATGGGTTGCAGGGTTTGCTACATATATGGCCCACCCCCACTCCCACCGCCTGCAAAATCATTGCAGTCTATGCTGCATTTGAGGCAGCACTTCAGCTTCTTCTTCCCGGGAAAACCGTTTACGGCCCTATTTCTCCAACCGGCCACCGACCTGTCTACAAGGCAAATGGTCTGCAAGCCTATTTTGTCACCTTGATTACTTATTTTGCTCTCTGGTGGTTTGGGATATTCAACCCTACGATTGTTTATCATCATTTGGGAGAAATTTATTCAGCTCTCATCTTCGGCAGCTTTCTCTTCTGTGTTTTCTTGTACATCAAGGGTCATTTGGCACCGTCTTCTACAGATTCTGGCTCATCTGGAAACTTAATCATTGATTTTTACTGGGGGATGGAACTTTATCCACGCATTGGAAAACATTTTGACATAAAAGTCTTCACAAACTGCAGATTTGGAATGATGTCATGGGCTGTTCTTGCACTGACCTACTGCATAAAGCAGTATGAAGAAAATGGAAAAGTAGCGGACTCAATGCTTGTAAATACTGCATTAATGCTGGTATATGTTACCAAGTTTTTCTGGTGGGAAGCTGGATATTGGAGCACAATGGATATTGCACATGATCGAGCTGGATTTTATATTTGCTGGGGTTGCTTGGTGTGGGTTCCATCTGTTTATACGTCTCCTGGAATGTACCTTGTCAACCATCCTGTAAATCTTGGCATCAAGCTAGCGCTCTCAATTTTAGTAGCTGGCATTCTTTGCATATACATCAACTATGATTGTGACAGGCAAAGGCAAGAATTTCGTAGGACAAATGGAAAAGGCACAGTCTGGGGAAAAGCTCCTTCAAAGATAGAGGCCACATATACTACTACTTCTGGGGAAACTAAAAGAAGCCTTCTTTTAACCTCTGGATGGTAAGCTTTCACTTAAATTTCTGTTTGATTACAGACCATACCTGCCTCTTCTCCCGATTGAGGAGTTTAACTCGTCACTTGTTGGGCCTGATTCTGGACATTTGATTTAAAATAGATCATAATTCTATAAAAAGTTTATATTGATAGTTTACATTCAGATATGAATGTTATTTGGAGTAATGATACACAAACATCCTCTTCTTTTAAACACTCTATCAACACTTATCATTTTTCTCTTCTTATCACATCATAAATCTTATAATACCTATGTTATTTTTTCTCTTTTTCTTCTCTCTCTAGGTGTTCATGGCATAATGGGTGTTCATCAAATATATTTTCCAATAATTAATTCACTTTTACTGTGGTGCTTGCAGGTGGGGATTATCTCGTCACTTTCATTATGTCCCTGAAATACTGGCAGCTTTCTTCTGGACAGTCCCAGCTCTTTTCGAACATGTAAGGGTCCCTTTCTCTTTGTACAAGTTGAAGTTTGGAGA
>Glyma08g23970.3 sequence type=transcript gene model=Glyma08g23970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
AAAAAAAAGAGGGAAGTGGAAGTGTGGGGGAGGGGGCAGAGACTGATATATGGTATGGTCGTCTCTGAGTCTGAAGATCTGTGAGTTAATTGCATTTGCAGAGAGAGAGAGAGAGAGAGAGGGAAGACGGTTGTGGGGATTCGATGGGGGCCACCGTTCACTCGCCGCTAGTCACTTATGCTTCCGTCATATCTCTGCTTACACTCTGTCCTCCGTTTGTCATACTTCTATGGTACACCATGACTCTTGCTGACGGATCTGTTTCCGAGACATTCCATTATTTAAGGCAGAATGGGTTGCAGGGTTTGCTACATATATGGCCCACCCCCACTCCCACCGCCTGCAAAATCATTGCAGTCTATGCTGCATTTGAGGCAGCACTTCAGCTTCTTCTTCCCGGGAAAACCGTTTACGGCCCTATTTCTCCAACCGGCCACCGACCTGTCTACAAGGCAAATGGTCTGCAAGCCTATTTTGTCACCTTGATTACTTATTTTGCTCTCTGGTGGTTTGGGATATTCAACCCTACGATTGTTTATCATCATTTGGGAGAAATTTATTCAGCTCTCATCTTCGGCAGCTTTCTCTTCTGTGTTTTCTTGTACATCAAGGGTCATTTGGCACCGTCTTCTACAGATTCTGGCTCATCTGGAAACTTAATCATTGATTTTTACTGGGGGATGGAACTTTATCCACGCATTGGAAAACATTTTGACATAAAAGTCTTCACAAACTGCAGATTTGGAATGATGTCATGGGCTGTTCTTGCACTGACCTACTGCATAAAGCAGTATGAAGAAAATGGAAAAGTAGCGGACTCAATGCTTGTAAATACTGCATTAATGCTGGTATATGTTACCAAGTTTTTCTGGTGGGAAGCTGGATATTGGAGCACAATGGATATTGCACATGATCGAGCTGGATTTTATATTTGCTGGGGTTGCTTGGTGTGGGTTCCATCTGTTTATACGTCTCCTGGAATGTACCTTGTCAACCATCCTGTAAATCTTGGCATCAAGCTAGCGCTCTCAATTTTAGTAGCTGGCATTCTTTGCATATACATCAACTATGATTGTGACAGGCAAAGGCAAGAATTTCGTAGGACAAATGGAAAAGGCACAGTCTGGGGAAAAGCTCCTTCAAAGGTGGGGATTATCTCGTCACTTTCATTATGTCCCTGAAATACTGGCAGCTTTCTTCTGGACAGTCCCAGCTCTTTTCGAACATTTTTTGCCTTACTTCTACGTGATATTTCTTACCATCCTTCTCTTTGATCGAGCAAAACGAGATGATGATCGTTGCAGATCCAAGTATGGCAAGTACTGGAAACTATATTGCGACAAGGTACCTTACAGAATCATTCCAGGAATATACTGAAGAATGATTATCGAAAACGGCTTATCTGGAGTCCCCCAACTTAAAATTAAAAACCAAGGACGCCATCTGTAGCTTTATATTGTTTGGTGCCTCCTTAAGACACGTGGTAGATTAGACTTTCGCTGAGAGCTAATTATTGAATTATTGAACCGGATTTTTTAAGCTAATGTCGAGACTTGATTTCGGCTCCAGCTGTGTTAATCTCTTTATCTATGACTTGTGAGAAAGGTGCATGGTTTACGGGCTGGTGTTACAATTTGAAGTTTTATTCTGTTCCTGTTTTCTTCCCTCGCATATCATGATCCATAATCTAAAATCATCCGGTGCAAGCAGACACAATGCTTG
Coding sequences of Glyma08g23970
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g23970.1 sequence type=CDS gene model=Glyma08g23970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGGGCCACCGTTCACTCGCCGCTAGTCACTTATGCTTCCGTCATATCTCTGCTTACACTCTGTCCTCCGTTTGTCATACTTCTATGGTACACCATGACTCTTGCTGACGGATCTGTTTCCGAGACATTCCATTATTTAAGGCAGAATGGGTTGCAGGGTTTGCTACATATATGGCCCACCCCCACTCCCACCGCCTGCAAAATCATTGCAGTCTATGCTGCATTTGAGGCAGCACTTCAGCTTCTTCTTCCCGGGAAAACCGTTTACGGCCCTATTTCTCCAACCGGCCACCGACCTGTCTACAAGGCAAATGGTCTGCAAGCCTATTTTGTCACCTTGATTACTTATTTTGCTCTCTGGTGGTTTGGGATATTCAACCCTACGATTGTTTATCATCATTTGGGAGAAATTTATTCAGCTCTCATCTTCGGCAGCTTTCTCTTCTGTGTTTTCTTGTACATCAAGGGTCATTTGGCACCGTCTTCTACAGATTCTGGCTCATCTGGAAACTTAATCATTGATTTTTACTGGGGGATGGAACTTTATCCACGCATTGGAAAACATTTTGACATAAAAGTCTTCACAAACTGCAGATTTGGAATGATGTCATGGGCTGTTCTTGCACTGACCTACTGCATAAAGCAGTATGAAGAAAATGGAAAAGTAGCGGACTCAATGCTTGTAAATACTGCATTAATGCTGGTATATGTTACCAAGTTTTTCTGGTGGGAAGCTGGATATTGGAGCACAATGGATATTGCACATGATCGAGCTGGATTTTATATTTGCTGGGGTTGCTTGGTGTGGGTTCCATCTGTTTATACGTCTCCTGGAATGTACCTTGTCAACCATCCTGTAAATCTTGGCATCAAGCTAGCGCTCTCAATTTTAGTAGCTGGCATTCTTTGCATATACATCAACTATGATTGTGACAGGCAAAGGCAAGAATTTCGTAGGACAAATGGAAAAGGCACAGTCTGGGGAAAAGCTCCTTCAAAGATAGAGGCCACATATACTACTACTTCTGGGGAAACTAAAAGAAGCCTTCTTTTAACCTCTGGATGGTGGGGATTATCTCGTCACTTTCATTATGTCCCTGAAATACTGGCAGCTTTCTTCTGGACAGTCCCAGCTCTTTTCGAACATTTTTTGCCTTACTTCTACGTGATATTTCTTACCATCCTTCTCTTTGATCGAGCAAAACGAGATGATGATCGTTGCAGATCCAAGTATGGCAAGTACTGGAAACTATATTGCGACAAGGTACCTTACAGAATCATTCCAGGAATATACTGA
>Glyma08g23970.2 sequence type=CDS gene model=Glyma08g23970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGGGCCACCGTTCACTCGCCGCTAGTCACTTATGCTTCCGTCATATCTCTGCTTACACTCTGTCCTCCGTTTGTCATACTTCTATGGTACACCATGACTCTTGCTGACGGATCTGTTTCCGAGACATTCCATTATTTAAGGCAGAATGGGTTGCAGGGTTTGCTACATATATGGCCCACCCCCACTCCCACCGCCTGCAAAATCATTGCAGTCTATGCTGCATTTGAGGCAGCACTTCAGCTTCTTCTTCCCGGGAAAACCGTTTACGGCCCTATTTCTCCAACCGGCCACCGACCTGTCTACAAGGCAAATGGTCTGCAAGCCTATTTTGTCACCTTGATTACTTATTTTGCTCTCTGGTGGTTTGGGATATTCAACCCTACGATTGTTTATCATCATTTGGGAGAAATTTATTCAGCTCTCATCTTCGGCAGCTTTCTCTTCTGTGTTTTCTTGTACATCAAGGGTCATTTGGCACCGTCTTCTACAGATTCTGGCTCATCTGGAAACTTAATCATTGATTTTTACTGGGGGATGGAACTTTATCCACGCATTGGAAAACATTTTGACATAAAAGTCTTCACAAACTGCAGATTTGGAATGATGTCATGGGCTGTTCTTGCACTGACCTACTGCATAAAGCAGTATGAAGAAAATGGAAAAGTAGCGGACTCAATGCTTGTAAATACTGCATTAATGCTGGTATATGTTACCAAGTTTTTCTGGTGGGAAGCTGGATATTGGAGCACAATGGATATTGCACATGATCGAGCTGGATTTTATATTTGCTGGGGTTGCTTGGTGTGGGTTCCATCTGTTTATACGTCTCCTGGAATGTACCTTGTCAACCATCCTGTAAATCTTGGCATCAAGCTAGCGCTCTCAATTTTAGTAGCTGGCATTCTTTGCATATACATCAACTATGATTGTGACAGGCAAAGGCAAGAATTTCGTAGGACAAATGGAAAAGGCACAGTCTGGGGAAAAGCTCCTTCAAAGATAGAGGCCACATATACTACTACTTCTGGGGAAACTAAAAGAAGCCTTCTTTTAACCTCTGGATGGTAA
>Glyma08g23970.3 sequence type=CDS gene model=Glyma08g23970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGGGCCACCGTTCACTCGCCGCTAGTCACTTATGCTTCCGTCATATCTCTGCTTACACTCTGTCCTCCGTTTGTCATACTTCTATGGTACACCATGACTCTTGCTGACGGATCTGTTTCCGAGACATTCCATTATTTAAGGCAGAATGGGTTGCAGGGTTTGCTACATATATGGCCCACCCCCACTCCCACCGCCTGCAAAATCATTGCAGTCTATGCTGCATTTGAGGCAGCACTTCAGCTTCTTCTTCCCGGGAAAACCGTTTACGGCCCTATTTCTCCAACCGGCCACCGACCTGTCTACAAGGCAAATGGTCTGCAAGCCTATTTTGTCACCTTGATTACTTATTTTGCTCTCTGGTGGTTTGGGATATTCAACCCTACGATTGTTTATCATCATTTGGGAGAAATTTATTCAGCTCTCATCTTCGGCAGCTTTCTCTTCTGTGTTTTCTTGTACATCAAGGGTCATTTGGCACCGTCTTCTACAGATTCTGGCTCATCTGGAAACTTAATCATTGATTTTTACTGGGGGATGGAACTTTATCCACGCATTGGAAAACATTTTGACATAAAAGTCTTCACAAACTGCAGATTTGGAATGATGTCATGGGCTGTTCTTGCACTGACCTACTGCATAAAGCAGTATGAAGAAAATGGAAAAGTAGCGGACTCAATGCTTGTAAATACTGCATTAATGCTGGTATATGTTACCAAGTTTTTCTGGTGGGAAGCTGGATATTGGAGCACAATGGATATTGCACATGATCGAGCTGGATTTTATATTTGCTGGGGTTGCTTGGTGTGGGTTCCATCTGTTTATACGTCTCCTGGAATGTACCTTGTCAACCATCCTGTAAATCTTGGCATCAAGCTAGCGCTCTCAATTTTAGTAGCTGGCATTCTTTGCATATACATCAACTATGATTGTGACAGGCAAAGGCAAGAATTTCGTAGGACAAATGGAAAAGGCACAGTCTGGGGAAAAGCTCCTTCAAAGGTGGGGATTATCTCGTCACTTTCATTATGTCCCTGA
Predicted protein sequences of Glyma08g23970
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g23970.1 sequence type=predicted peptide gene model=Glyma08g23970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGATVHSPLVTYASVISLLTLCPPFVILLWYTMTLADGSVSETFHYLRQNGLQGLLHIWPTPTPTACKIIAVYAAFEAALQLLLPGKTVYGPISPTGHRPVYKANGLQAYFVTLITYFALWWFGIFNPTIVYHHLGEIYSALIFGSFLFCVFLYIKGHLAPSSTDSGSSGNLIIDFYWGMELYPRIGKHFDIKVFTNCRFGMMSWAVLALTYCIKQYEENGKVADSMLVNTALMLVYVTKFFWWEAGYWSTMDIAHDRAGFYICWGCLVWVPSVYTSPGMYLVNHPVNLGIKLALSILVAGILCIYINYDCDRQRQEFRRTNGKGTVWGKAPSKIEATYTTTSGETKRSLLLTSGWWGLSRHFHYVPEILAAFFWTVPALFEHFLPYFYVIFLTILLFDRAKRDDDRCRSKYGKYWKLYCDKVPYRIIPGIY*
>Glyma08g23970.2 sequence type=predicted peptide gene model=Glyma08g23970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGATVHSPLVTYASVISLLTLCPPFVILLWYTMTLADGSVSETFHYLRQNGLQGLLHIWPTPTPTACKIIAVYAAFEAALQLLLPGKTVYGPISPTGHRPVYKANGLQAYFVTLITYFALWWFGIFNPTIVYHHLGEIYSALIFGSFLFCVFLYIKGHLAPSSTDSGSSGNLIIDFYWGMELYPRIGKHFDIKVFTNCRFGMMSWAVLALTYCIKQYEENGKVADSMLVNTALMLVYVTKFFWWEAGYWSTMDIAHDRAGFYICWGCLVWVPSVYTSPGMYLVNHPVNLGIKLALSILVAGILCIYINYDCDRQRQEFRRTNGKGTVWGKAPSKIEATYTTTSGETKRSLLLTSGW*
>Glyma08g23970.3 sequence type=predicted peptide gene model=Glyma08g23970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGATVHSPLVTYASVISLLTLCPPFVILLWYTMTLADGSVSETFHYLRQNGLQGLLHIWPTPTPTACKIIAVYAAFEAALQLLLPGKTVYGPISPTGHRPVYKANGLQAYFVTLITYFALWWFGIFNPTIVYHHLGEIYSALIFGSFLFCVFLYIKGHLAPSSTDSGSSGNLIIDFYWGMELYPRIGKHFDIKVFTNCRFGMMSWAVLALTYCIKQYEENGKVADSMLVNTALMLVYVTKFFWWEAGYWSTMDIAHDRAGFYICWGCLVWVPSVYTSPGMYLVNHPVNLGIKLALSILVAGILCIYINYDCDRQRQEFRRTNGKGTVWGKAPSKVGIISSLSLCP*