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Report for Sequence Feature Glyma08g23950
Feature Type: gene_model
Chromosome: Gm08
Start: 18240365
stop: 18247314
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g23950
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G16860 AT
Annotation by Michelle Graham. TAIR10: Ubiquitin-specific protease family C19-related protein | chr1:5768280-5770183 FORWARD LENGTH=474
SoyBase E_val: 0 ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
PTHR24006 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24006:SF18 Panther
SUBFAMILY NOT NAMED
JGI ISS
UniRef100_I1KVT4 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KVT4_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q9ZVA7 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: F9K20.7 protein n=1 Tax=Arabidopsis thaliana RepID=Q9ZVA7_ARATH
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g23950
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma08g23950
Paralog Evidence Comments
Glyma07g00470 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g23950 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g224000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g23950
Transcripts of Glyma08g23950
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g23950.2 sequence type=transcript gene model=Glyma08g23950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
GTTAGGAAGTTATCCTCAAAACAACATATGCTTCACGGTAAAAAGTTGACGATGAAACAAAATCCTGCAATAGATTATTTTTAATCAAAATTACTTTCAAATTGAATTGTTTATGCCAGATAACCTTTATAGCTTAAAGCTTCCCTCCCCCTATGAAAGTAAAATTCTCGAATTTCTTTTCTTAATTTGGTACACACGTTTTACATCGTGTATAAGACAAAGAAACCAGAGTAATAAATAAACGATTTCGAGGCGCCAAAGACGCTAATAGTTGTTTTTGGGGTTAACAATTAGCACAGACTCTTCAATTTCCCCATTTAAAGGTGCGAGAGAGAGAGATGGATACTGGTATGCTATGAAGATGGGATCTCAGACTCAGCGTCATCACCACTCTCTTTGATTCTCTTCAATCTTGAGTCTCCAGTATTACTTTGAGTACCACTTCAACAAACTGGTGCTGCTTTGAAAAAGTCTGATGGGTTCAAGATTCCCATCTCATCAGCTCAGCAATGGCCTGTATGTATCAGGCCGGCCTGAACAGCCAAAAGAAAAGACTCCCACAATGAGCTCAGTTGCCATGCCCTATACTGGTGGTGACATCAAGAGGTCGGGAGAATTAGGCAAAATGTTTGATATCCCAATGGATGGCTCTAAATCTAGAAAATCCGGTCCCATAAGTAATGCTCCTTCAAGGACAGGATCATTTGCAGGTGCTGCTTCACACTCTGGACCTATCATGCAAAATGCTGCAGCTCGTTCTGCTTATATCACATCTGGTAATGTATCTACTGGAGGCATGTCTGCTTCAGCCTCAATGAAAAAGACCAACTCTGGTCCATTGAATAAGCATGGGGAACCAGTCAAGAAGTCATCTGGCCCTCAATCTGGTGGAGTTACACGCCAAAACTCTGGTCCAATTCCTCCAGTTCTTCCTACGACTGGTCTTATTACATCTGGCCCATTAAATTCATCTGGAGCTCCAAGGAAAGTGTCTGGTCAATTAGATTCTACAGGATCAATGAAATCACATAGTTCCTTTGTAGCCCACAATCCTGCTGTTACCACTCTTAGCCTTGATGATGAATATTCCTTCAGGAGGAACTTCCCGAAGCCAATATTGTGGTCTGTGATTCTGATTTTTGTAATGGGATTCATTGCTGGCGGTTTTATTCTTGGAGCTGTCCGCAATGCCATTCTCCTCATTGTTGTTGTAATTCTTTTTGGTGCGGTTGCTGCATTATTCACTTGGAATAGTTGTTTTGGAAGGAAAGCCATTGTTGGTTTCATTTCCCGTTATCCAGATGCAGAGCTTAGAACTGCCAAGAATGGACAATTTGTGAAGGTTTCTGGGGTGGTTACCTGCGGTAATGTTCCACTAGAGTCCTCCTTTCAGAAAGTTCCTAGATGTGTATATACATCCACAAGCTTGTATGAATATCGAGGATGGGATTCAAAAGCAGCAAACCCAAAACATCGCCGTTTTACATGGGGACTTAGAGCAGCTGAGAGACATGTGGTGGACTTCTACATATCTGATTTCCAATCTGGATTGAGAGCATTGGTTAAAACAGGCTATGGTGCAAGGGTGACTCCTTATGTTGATGATTCCGTTGTTATTGATGTTAATCCAGCCAATAAAGACATGTCCCCTGAGTTTCTTCGATGGTTGGGCGAGAGAAAACTTTCTAGCGATGACCGTATAATGCAATTAAAAGAAGGGTACATCAAAGAAGGTAGCACAGTTAGTGTAATGGGAGTTGTTCAAAGAAATGACAATGTGCTTATGATTGTCCCTCCACCTGAGCCTTTGACTACCGGATGCCAATGGGCCAAATGTATATTCCCTGCTAGCCTTGAGGGTATTGTTTTGAGATGTGAAGATACGTCAAAGATTGACGTCATTCCAGTGTAGTCATCCTTGATGTTGTTCCAGTGTAGTCATATCCTCTCTGGTAACCTCTTAGGTATTCTTCTTTAAAAGATATGTCTTCGCATATCCAAAATGATGGTGGTGGTGGTGGTTGTTGTTTGTATTTTGTAAGCATATACGTGTTGTTGGTAAGTGTGATGATTCTGCCATTGATATGGTGATTTCTTTTTTTCCCCCACACTCAACTCCTAGTTTGTTGTATAGCTAATGGAAATTCTTATTCGTTTATTTTTCCTGAGGATTTTATACTTTTTATTGGACGTGGTTTCATATAGTGAGAAGTTGTGTATTCAGAAGGACTTTTGTTGTTTGAATCTGTCAAGGGAATCTATCATACACGATTTGTCAATTAGGCGGTGCTGAACTACTGAAAAAAGATTGAATAT
Coding sequences of Glyma08g23950
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g23950.1 sequence type=CDS gene model=Glyma08g23950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGTTCAAGATTCCCATCTCATCAGCTCAGCAATGGCCTGTATGTATCAGGCCGGCCTGAACAGCCAAAAGAAAAGACTCCCACAATGAGCTCAGTTGCCATGCCCTATACTGGTGGTGACATCAAGAGGTCGGGAGAATTAGGCAAAATGTTTGATATCCCAATGGATGGCTCTAAATCTAGAAAATCCGGTCCCATAAGTAATGCTCCTTCAAGGACAGGATCATTTGCAGGTGCTGCTTCACACTCTGGACCTATCATGCAAAATGCTGCAGCTCGTTCTGCTTATATCACATCTGGTAATGTATCTACTGGAGGCATGTCTGCTTCAGCCTCAATGAAAAAGACCAACTCTGGTCCATTGAATAAGCATGGGGAACCAGTCAAGAAGTCATCTGGCCCTCAATCTGGTGGAGTTACACGCCAAAACTCTGGTCCAATTCCTCCAGTTCTTCCTACGACTGGTCTTATTACATCTGGCCCATTAAATTCATCTGGAGCTCCAAGGAAAGTGTCTGGTCAATTAGATTCTACAGGATCAATGAAATCACATAGTTCCTTTGTAGCCCACAATCCTGCTGTTACCACTCTTAGCCTTGATGATGAATATTCCTTCAGGAGGAACTTCCCGAAGCCAATATTGTGGTCTGTGATTCTGATTTTTGTAATGGGATTCATTGCTGGCGGTTTTATTCTTGGAGCTGTCCGCAATGCCATTCTCCTCATTGTTGTTGTAATTCTTTTTGGTGCGGTTGCTGCATTATTCACTTGGAATAGTTGTTTTGGAAGGAAAGCCATTGTTGGTTTCATTTCCCGTTATCCAGATGCAGAGCTTAGAACTGCCAAGAATGGACAATTTGTGAAGGTTTCTGGGGTGGTTACCTGCGGTAATGTTCCACTAGAGTCCTCCTTTCAGAAAGTTCCTAGATGTGTATATACATCCACAAGCTTGTATGAATATCGAGGATGGGATTCAAAAGCAGCAAACCCAAAACATCGCCGTTTTACATGGGGACTTAGAGCAGCTGAGAGACATGTGGTGGACTTCTACATATCTGATTTCCAATCTGGATTGAGAGCATTGGTTAAAACAGGCTATGGTGCAAGGGTGACTCCTTATGTTGATGATTCCGTTGTTATTGATGTTAATCCAGCCAATAAAGACATGTCCCCTGAGTTTCTTCGATGGTTGGGCGAGAGAAAACTTTCTAGCGATGACCGTATAATGCAATTAAAAGAAGGGTACATCAAAGAAGGTAGCACAGTTAGTGTAATGGGAGTTGTTCAAAGAAATGACAATGTGCTTATGATTGTCCCTCCACCTGAGCCTTTGACTACCGGATGCCAATGGGCCAAATGTATATTCCCTGCTAGCCTTGAGGGTATTGTTTTGAGATGTGAAGATACGTCAAAGATTGACGTCATTCCAGTGTAG
>Glyma08g23950.2 sequence type=CDS gene model=Glyma08g23950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGTTCAAGATTCCCATCTCATCAGCTCAGCAATGGCCTGTATGTATCAGGCCGGCCTGAACAGCCAAAAGAAAAGACTCCCACAATGAGCTCAGTTGCCATGCCCTATACTGGTGGTGACATCAAGAGGTCGGGAGAATTAGGCAAAATGTTTGATATCCCAATGGATGGCTCTAAATCTAGAAAATCCGGTCCCATAAGTAATGCTCCTTCAAGGACAGGATCATTTGCAGGTGCTGCTTCACACTCTGGACCTATCATGCAAAATGCTGCAGCTCGTTCTGCTTATATCACATCTGGTAATGTATCTACTGGAGGCATGTCTGCTTCAGCCTCAATGAAAAAGACCAACTCTGGTCCATTGAATAAGCATGGGGAACCAGTCAAGAAGTCATCTGGCCCTCAATCTGGTGGAGTTACACGCCAAAACTCTGGTCCAATTCCTCCAGTTCTTCCTACGACTGGTCTTATTACATCTGGCCCATTAAATTCATCTGGAGCTCCAAGGAAAGTGTCTGGTCAATTAGATTCTACAGGATCAATGAAATCACATAGTTCCTTTGTAGCCCACAATCCTGCTGTTACCACTCTTAGCCTTGATGATGAATATTCCTTCAGGAGGAACTTCCCGAAGCCAATATTGTGGTCTGTGATTCTGATTTTTGTAATGGGATTCATTGCTGGCGGTTTTATTCTTGGAGCTGTCCGCAATGCCATTCTCCTCATTGTTGTTGTAATTCTTTTTGGTGCGGTTGCTGCATTATTCACTTGGAATAGTTGTTTTGGAAGGAAAGCCATTGTTGGTTTCATTTCCCGTTATCCAGATGCAGAGCTTAGAACTGCCAAGAATGGACAATTTGTGAAGGTTTCTGGGGTGGTTACCTGCGGTAATGTTCCACTAGAGTCCTCCTTTCAGAAAGTTCCTAGATGTGTATATACATCCACAAGCTTGTATGAATATCGAGGATGGGATTCAAAAGCAGCAAACCCAAAACATCGCCGTTTTACATGGGGACTTAGAGCAGCTGAGAGACATGTGGTGGACTTCTACATATCTGATTTCCAATCTGGATTGAGAGCATTGGTTAAAACAGGCTATGGTGCAAGGGTGACTCCTTATGTTGATGATTCCGTTGTTATTGATGTTAATCCAGCCAATAAAGACATGTCCCCTGAGTTTCTTCGATGGTTGGGCGAGAGAAAACTTTCTAGCGATGACCGTATAATGCAATTAAAAGAAGGGTACATCAAAGAAGGTAGCACAGTTAGTGTAATGGGAGTTGTTCAAAGAAATGACAATGTGCTTATGATTGTCCCTCCACCTGAGCCTTTGACTACCGGATGCCAATGGGCCAAATGTATATTCCCTGCTAGCCTTGAGGGTATTGTTTTGAGATGTGAAGATACGTCAAAGATTGACGTCATTCCAGTGTAG
Predicted protein sequences of Glyma08g23950
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g23950.1 sequence type=predicted peptide gene model=Glyma08g23950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGSRFPSHQLSNGLYVSGRPEQPKEKTPTMSSVAMPYTGGDIKRSGELGKMFDIPMDGSKSRKSGPISNAPSRTGSFAGAASHSGPIMQNAAARSAYITSGNVSTGGMSASASMKKTNSGPLNKHGEPVKKSSGPQSGGVTRQNSGPIPPVLPTTGLITSGPLNSSGAPRKVSGQLDSTGSMKSHSSFVAHNPAVTTLSLDDEYSFRRNFPKPILWSVILIFVMGFIAGGFILGAVRNAILLIVVVILFGAVAALFTWNSCFGRKAIVGFISRYPDAELRTAKNGQFVKVSGVVTCGNVPLESSFQKVPRCVYTSTSLYEYRGWDSKAANPKHRRFTWGLRAAERHVVDFYISDFQSGLRALVKTGYGARVTPYVDDSVVIDVNPANKDMSPEFLRWLGERKLSSDDRIMQLKEGYIKEGSTVSVMGVVQRNDNVLMIVPPPEPLTTGCQWAKCIFPASLEGIVLRCEDTSKIDVIPV*
>Glyma08g23950.2 sequence type=predicted peptide gene model=Glyma08g23950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGSRFPSHQLSNGLYVSGRPEQPKEKTPTMSSVAMPYTGGDIKRSGELGKMFDIPMDGSKSRKSGPISNAPSRTGSFAGAASHSGPIMQNAAARSAYITSGNVSTGGMSASASMKKTNSGPLNKHGEPVKKSSGPQSGGVTRQNSGPIPPVLPTTGLITSGPLNSSGAPRKVSGQLDSTGSMKSHSSFVAHNPAVTTLSLDDEYSFRRNFPKPILWSVILIFVMGFIAGGFILGAVRNAILLIVVVILFGAVAALFTWNSCFGRKAIVGFISRYPDAELRTAKNGQFVKVSGVVTCGNVPLESSFQKVPRCVYTSTSLYEYRGWDSKAANPKHRRFTWGLRAAERHVVDFYISDFQSGLRALVKTGYGARVTPYVDDSVVIDVNPANKDMSPEFLRWLGERKLSSDDRIMQLKEGYIKEGSTVSVMGVVQRNDNVLMIVPPPEPLTTGCQWAKCIFPASLEGIVLRCEDTSKIDVIPV*