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Report for Sequence Feature Glyma08g23940

Feature Type:gene_model
Chromosome:Gm08
Start:18234799
stop:18235685
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G27990AT Annotation by Michelle Graham. TAIR10: YGGT family protein | chr4:13923991-13924647 REVERSE LENGTH=218 SoyBaseE_val: 2.00E-64ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF02325PFAM YGGT family JGI ISS
UniRef100_D7MDP6UniRef Annotation by Michelle Graham. Most informative UniRef hit: YGGT family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MDP6_ARALL SoyBaseE_val: 2.00E-62ISS
UniRef100_I1KVT3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KVT3_SOYBN SoyBaseE_val: 1.00E-140ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g23940 not represented in the dataset

Glyma08g23940 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma07g00480 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g223900 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma08g23940.1   sequence type=CDS   gene model=Glyma08g23940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGATGGCGTTGTTAGCGGGTCAGAGCTCCATTTCCGCGCTTCCCTTTGTTAACCCAACTTCCTTGAGCTTCAAACCTCTCGCCTTTACCAAATCCCTAGCTCTCCCTTCAGCACAGAGGCCAACTTCGCTGAGGCTGAAATGCAAGATGGAGAGCGACGGCGACATTCTGCGGGGGAGCACTCGCACGGTGACGACGCTGATGGGACTCGCCGTGTTGCTGATGAAGAAGGCGGCCATTCCAGTGTTGAACATCAACATCAACAGCAGCAGCAACAGCGTGTCCACGATGGGTGCTTTGTTCTTGGCATCTCTGCGGGACCGTCCGAGTGCGAGTGGGGCCCTAAACACGCCGCTGACGGTTGTGGCGGCGGGGCTTGGGAAGTGGCTTGACATATACAGCGGGGTTTTGATGGTTAGGGTTTTGCTGAGTTGGTTCCCCAACATCCCCTGGGAACGCCAGCCTCTCTCCGCCATCCGAGACCTCTGCGATCCTTATCTCAACCTCTTCCGCAACATCATCCCCCCTGTTTTTGACACCCTCGACGTCAGCCCTCTTCTCGCCTTCGCCGTCTTGGGCACTCTTGGCTCTATTCTTCAGACTGCTATGTGA

>Glyma08g23940.1   sequence type=predicted peptide   gene model=Glyma08g23940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTMALLAGQSSISALPFVNPTSLSFKPLAFTKSLALPSAQRPTSLRLKCKMESDGDILRGSTRTVTTLMGLAVLLMKKAAIPVLNININSSSNSVSTMGALFLASLRDRPSASGALNTPLTVVAAGLGKWLDIYSGVLMVRVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGTLGSILQTAM*







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