SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G79650 | AT | Annotation by Michelle Graham. TAIR10: Rad23 UV excision repair protein family | chr1:29972406-29975132 REVERSE LENGTH=365 | SoyBase | E_val: 0 | ISS |
| GO:0006259 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA metabolic process | SoyBase | N/A | ISS |
| GO:0006284 | GO-bp | Annotation by Michelle Graham. GO Biological Process: base-excision repair | SoyBase | N/A | ISS |
| GO:0006289 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleotide-excision repair | SoyBase | N/A | ISS |
| GO:0033044 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of chromosome organization | SoyBase | N/A | ISS |
| GO:0043161 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003684 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: damaged DNA binding | SoyBase | N/A | ISS |
| GO:0043130 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ubiquitin binding | SoyBase | N/A | ISS |
| GO:0070628 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: proteasome binding | SoyBase | N/A | ISS |
| KOG0011 | KOG | Nucleotide excision repair factor NEF2, RAD23 component | JGI | ISS | |
| PTHR10621 | Panther | UV EXCISION REPAIR PROTEIN RAD23 | JGI | ISS | |
| PF00240 | PFAM | Ubiquitin family | JGI | ISS | |
| PF00627 | PFAM | UBA/TS-N domain | JGI | ISS | |
| PF09280 | PFAM | XPC-binding domain | JGI | ISS | |
| UniRef100_G7ZYZ1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: RAD23 protein n=3 Tax=Medicago truncatula RepID=G7ZYZ1_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KVT1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KVT1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g23930 not represented in the dataset |
Glyma08g23930 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g00490 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g223800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g23930.2 sequence type=transcript gene model=Glyma08g23930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GGGAGAAAGAAAAAACAAAGAGAATAGAAAAAGAGCAATATACATAATACATGTGTGGTTGACGTGTTCATCCTCTGCAACGGCAACAGACTAAGTTGTTTCTCTCTCTAGCCCTAGGGTTTCGTTCTCTACTACCGTTCTTTCATCAGATCGCTGCCGTTTCTGGCGTCATTCCGATAATTCGGCGGCATGAAGCTAACAGTGAAGACTTTGAAAGGGAGCCATTTCGAAATCAGGGTTCAACCCTCCGATACTGTTATGGCTGTCAAGAAGAATATTGAAGATGTACAAGGAAAAGATAATTACCCATGTGGACAGCAATTGTTGATTCACAATGGCAAGGTTTTGAAAGATGAAACTACATTAGTAGAGAATAAAGTCTCTGAAGATGGCTTTCTTGTTGTTATGCTTAGTAAGAGTAAAACATCAGGTTCTGCTGCAGCTTCATCTGTTCAGCCTGCCAGTAATCCTCCTACGACTGTATCAACGTCAAATTCCACCCCTCCTTCTGATCCTCCAGTGCAAACTCAAGCTGCAAACAACAGTACATCTAGCACAGATGCCCCAACTACAAATGTGTCTGCAGATACCTATGGTCTGGCTGCTTCGAATTTAGTTGCTGGTAGTAATCTTGAGCAGACTATTCAACAAATTATGGACATGGGTGGTGGCAATTGGGACAGAGACACAGTTAGTCGTGCTCTTCGAGCAGCTTATAATAACCCAGAGCGTGCTATAGATTACTTGTATTCTGGAATCCCTGAAGCAGCAGAAGTTGCTGTGCCAGTTCCTCAAACAGCTGGGATTTCTTCTGGAGCAGTTCCTGTAGGACCTAATTCATCTCCCTTAAATATGTTTCCACAGGAGACGATTTCTAGCACTGGTGCTGGACTTGGATCGCTAGACTTCCTTAGAAATAACCCCCAGTTTCAAGCATTGCGTTCAATGGTGCAATCCAATCCACAAATTCTACAGCCTGTGCTTCAGGAACTTGGTAAGCAGAATCCTGGTCTTTTAAGACTGATTCAAGAGCATCATGGGGAGTTTCTGCAGTTGATAAATGAACCTGTTGATGGTTCTGAAGGAGATATATTTGAGCAGCCCGAGCAAGACATGCCCCATGCCATCAATGTGACTCCAGCGGAGCAGGAGGCAATTGGAAGGCTCGAGGCTATGGGATTTGATAGAGCCTCGGTGATAGAGGCATTTTTGGCATGTGACCGTGATGAGCAATTGGCAGCCAACTATTTATTGGAGAATGCTGGAGACTTTGAGGATTAAATGACTCTCGGAAGGAAATAACTACTGATTTCCTGGCGAAGCTTGGAGTTAGGAGCTCTCTCTCTCTAAGTTATAGATCCACTCCTCCCCCTTATTTGCTTGCAGATGCCATTGGGGGTAACTCTGCTGCTGCGGCTTTAGTTCTTTTTCATTTTTATGTGCCAAAAAAAGAGTCTCTAACTTACATTACTTCCATTGATTCATAGTTTTGTTTGGCCCTTTTTTCCTTAATTTTTTTAAACTTTAATGTGACTTGTTGGATAATATATGGAGTAGAGTTTGGATTTAGCCTTGTGTCATCTAAAGAGTGTGTTATTGCGGCGTTCAATATGCACGTTCCACTTCGACGCTTCCATTTTCACGACAGTAACGT
>Glyma08g23930.1 sequence type=CDS gene model=Glyma08g23930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGCTAACAGTGAAGACTTTGAAAGGGAGCCATTTCGAAATCAGGGTTCAACCCTCCGATACTGTTATGGCTGTCAAGAAGAATATTGAAGATGTACAAGGAAAAGATAATTACCCATGTGGACAGCAATTGTTGATTCACAATGGCAAGGTTTTGAAAGATGAAACTACATTAGTAGAGAATAAAGTCTCTGAAGATGGCTTTCTTGTTGTTATGCTTAGTAAGAGTAAAACATCAGGTTCTGCTGCAGCTTCATCTGTTCAGCCTGCCAGTAATCCTCCTACGACTGTATCAACGTCAAATTCCACCCCTCCTTCTGATCCTCCAGTGCAAACTCAAGCTGCAAACAACAGTACATCTAGCACAGATGCCCCAACTACAAATGTGTCTGCAGATACCTATGGTCTGGCTGCTTCGAATTTAGTTGCTGGTAGTAATCTTGAGCAGACTATTCAACAAATTATGGACATGGGTGGTGGCAATTGGGACAGAGACACAGTTAGTCGTGCTCTTCGAGCAGCTTATAATAACCCAGAGCGTGCTATAGATTACTTGTATTCTGGAATCCCTGAAGCAGCAGAAGTTGCTGTGCCAGTTCCTCAAACAGCTGGGATTTCTTCTGGAGCAGTTCCTGTAGGACCTAATTCATCTCCCTTAAATATGTTTCCACAGGAGACGATTTCTAGCACTGGTGCTGGACTTGGATCGCTAGACTTCCTTAGAAATAACCCCCAGTTTCAAGCATTGCGTTCAATGGTGCAATCCAATCCACAAATTCTACAGCCTGTGCTTCAGGAACTTGGTAAGCAGAATCCTGGTCTTTTAAGACTGATTCAAGAGCATCATGGGGAGTTTCTGCAGTTGATAAATGAACCTGTTGATGGTTCTGAAGGTATGAAAGGAACGTTTCTACTTGTTAGCTCGATATGCTATTCTTATAATATCATAGATATATTTGAGCAGCCCGAGCAAGACATGCCCCATGCCATCAATGTGACTCCAGCGGAGCAGGAGGCAATTGGAAGGCTCGAGGCTATGGGATTTGATAGAGCCTCGGTGATAGAGGCATTTTTGGCATGTGACCGTGATGAGCAATTGGCAGCCAACTATTTATTGGAGAATGCTGGAGACTTTGAGGATTAA >Glyma08g23930.2 sequence type=CDS gene model=Glyma08g23930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGCTAACAGTGAAGACTTTGAAAGGGAGCCATTTCGAAATCAGGGTTCAACCCTCCGATACTGTTATGGCTGTCAAGAAGAATATTGAAGATGTACAAGGAAAAGATAATTACCCATGTGGACAGCAATTGTTGATTCACAATGGCAAGGTTTTGAAAGATGAAACTACATTAGTAGAGAATAAAGTCTCTGAAGATGGCTTTCTTGTTGTTATGCTTAGTAAGAGTAAAACATCAGGTTCTGCTGCAGCTTCATCTGTTCAGCCTGCCAGTAATCCTCCTACGACTGTATCAACGTCAAATTCCACCCCTCCTTCTGATCCTCCAGTGCAAACTCAAGCTGCAAACAACAGTACATCTAGCACAGATGCCCCAACTACAAATGTGTCTGCAGATACCTATGGTCTGGCTGCTTCGAATTTAGTTGCTGGTAGTAATCTTGAGCAGACTATTCAACAAATTATGGACATGGGTGGTGGCAATTGGGACAGAGACACAGTTAGTCGTGCTCTTCGAGCAGCTTATAATAACCCAGAGCGTGCTATAGATTACTTGTATTCTGGAATCCCTGAAGCAGCAGAAGTTGCTGTGCCAGTTCCTCAAACAGCTGGGATTTCTTCTGGAGCAGTTCCTGTAGGACCTAATTCATCTCCCTTAAATATGTTTCCACAGGAGACGATTTCTAGCACTGGTGCTGGACTTGGATCGCTAGACTTCCTTAGAAATAACCCCCAGTTTCAAGCATTGCGTTCAATGGTGCAATCCAATCCACAAATTCTACAGCCTGTGCTTCAGGAACTTGGTAAGCAGAATCCTGGTCTTTTAAGACTGATTCAAGAGCATCATGGGGAGTTTCTGCAGTTGATAAATGAACCTGTTGATGGTTCTGAAGGAGATATATTTGAGCAGCCCGAGCAAGACATGCCCCATGCCATCAATGTGACTCCAGCGGAGCAGGAGGCAATTGGAAGGCTCGAGGCTATGGGATTTGATAGAGCCTCGGTGATAGAGGCATTTTTGGCATGTGACCGTGATGAGCAATTGGCAGCCAACTATTTATTGGAGAATGCTGGAGACTTTGAGGATTAA
>Glyma08g23930.1 sequence type=predicted peptide gene model=Glyma08g23930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLVENKVSEDGFLVVMLSKSKTSGSAAASSVQPASNPPTTVSTSNSTPPSDPPVQTQAANNSTSSTDAPTTNVSADTYGLAASNLVAGSNLEQTIQQIMDMGGGNWDRDTVSRALRAAYNNPERAIDYLYSGIPEAAEVAVPVPQTAGISSGAVPVGPNSSPLNMFPQETISSTGAGLGSLDFLRNNPQFQALRSMVQSNPQILQPVLQELGKQNPGLLRLIQEHHGEFLQLINEPVDGSEGMKGTFLLVSSICYSYNIIDIFEQPEQDMPHAINVTPAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED* >Glyma08g23930.2 sequence type=predicted peptide gene model=Glyma08g23930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLVENKVSEDGFLVVMLSKSKTSGSAAASSVQPASNPPTTVSTSNSTPPSDPPVQTQAANNSTSSTDAPTTNVSADTYGLAASNLVAGSNLEQTIQQIMDMGGGNWDRDTVSRALRAAYNNPERAIDYLYSGIPEAAEVAVPVPQTAGISSGAVPVGPNSSPLNMFPQETISSTGAGLGSLDFLRNNPQFQALRSMVQSNPQILQPVLQELGKQNPGLLRLIQEHHGEFLQLINEPVDGSEGDIFEQPEQDMPHAINVTPAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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