SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G57330 | AT | Annotation by Michelle Graham. TAIR10: Galactose mutarotase-like superfamily protein | chr5:23218392-23220664 FORWARD LENGTH=312 | SoyBase | E_val: 1.00E-178 | ISS |
| GO:0005975 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process | SoyBase | N/A | ISS |
| GO:0006012 | GO-bp | Annotation by Michelle Graham. GO Biological Process: galactose metabolic process | SoyBase | N/A | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0019761 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004034 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: aldose 1-epimerase activity | SoyBase | N/A | ISS |
| GO:0016853 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: isomerase activity | SoyBase | N/A | ISS |
| GO:0030246 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: carbohydrate binding | SoyBase | N/A | ISS |
| KOG1594 | KOG | Uncharacterized enzymes related to aldose 1-epimerase | JGI | ISS | |
| PTHR11122 | Panther | APOSPORY-ASSOCIATED PROTEIN C-RELATED | JGI | ISS | |
| PF01263 | PFAM | Aldose 1-epimerase | JGI | ISS | |
| UniRef100_B9RGR6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Aldose 1-epimerase, putative n=1 Tax=Ricinus communis RepID=B9RGR6_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002338C50 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002338C50 related cluster n=1 Tax=unknown RepID=UPI0002338C50 | SoyBase | E_val: 0 | ISS |
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Glyma08g23910 not represented in the dataset |
Glyma08g23910 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g00510 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g223600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g23910.2 sequence type=CDS gene model=Glyma08g23910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCGCGAGAAATGAAGTATGTGCAACAATGTATGGGTGTCAATGGGCTCGAGAAAATCATTCTTAGAGAAGTTCGCGGTTTCTCTGCTGAGGTTTATTTATACGGGGCTCAAGTTACATCATGGAAAAATGACCTTGGGGAAGAATTGCTTTTTCTCAGTAGTAAGGCTAGTTTTAAGCCTCCAAAATCCATACGTGGAGGTATTCCAATATGTTTTCCTCAATTTTCAAATCATGGCTCTCTTGAGCATCATGGATTTGCAAGGAACAAGTTTTGGACATTAGATCCCAATCCCCCAGCATTTCCAACAAATAGCACAAACAAAGCTTTCACTGATTTGATTCTTAAGCACTCTGAAGATGATAACAAAAGTTGGCCTCATAGATACGAGTTTCGCCTGAGGGTAGCTTTGGGACCTGCAGGAGATCTGATGTTGACATCTCGCATTCGAAACACAAACACGGATGGGAAACCGTTTACCTTCACATTTGCCTATAATACATATTTCTATGTTACTGACATCAGTGAAGTGCGAATTGAAGGATTAGAGACACTAGATTATCTGGACAACTTGAAGAATAAAGAACGATTTACTGAACAAGGGGATGCTATAACATTTGAGTCTGAAGTGGATAAAGTATACTTAAGCACCCCCACAAAAATTGCTATCATAGACCATGAAAGGAAGAGAACTTTTGTACTACGAAAAGATGGGCTTCCAGATGCCGTGGTATGGAATCCATGGGACAAAAAAGCAAAAACCATACCGGATTTAGGGGATAATGAATACAAACATATGCTTTGTGTTCAAGCTGCTTGTGTAGAAAAACCAATTACTCTGAAACCGGGTGAAGAGTGGAAAGGAAGGCAAGAAATATCTCCAGTTCCTTCAAGTTATTGTAGTGGTCAACTTGACCCACGGAAAGTGCTTTTTAGATATTAG
>Glyma08g23910.2 sequence type=predicted peptide gene model=Glyma08g23910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSREMKYVQQCMGVNGLEKIILREVRGFSAEVYLYGAQVTSWKNDLGEELLFLSSKASFKPPKSIRGGIPICFPQFSNHGSLEHHGFARNKFWTLDPNPPAFPTNSTNKAFTDLILKHSEDDNKSWPHRYEFRLRVALGPAGDLMLTSRIRNTNTDGKPFTFTFAYNTYFYVTDISEVRIEGLETLDYLDNLKNKERFTEQGDAITFESEVDKVYLSTPTKIAIIDHERKRTFVLRKDGLPDAVVWNPWDKKAKTIPDLGDNEYKHMLCVQAACVEKPITLKPGEEWKGRQEISPVPSSYCSGQLDPRKVLFRY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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