SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G51660 | AT | Annotation by Michelle Graham. TAIR10: mitogen-activated protein kinase kinase 4 | chr1:19154575-19155675 FORWARD LENGTH=366 | SoyBase | E_val: 5.00E-169 | ISS |
| GO:0000165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: MAPK cascade | SoyBase | N/A | ISS |
| GO:0002679 | GO-bp | Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0006468 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein phosphorylation | SoyBase | N/A | ISS |
| GO:0006612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane | SoyBase | N/A | ISS |
| GO:0007154 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell communication | SoyBase | N/A | ISS |
| GO:0009409 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cold | SoyBase | N/A | ISS |
| GO:0009595 | GO-bp | Annotation by Michelle Graham. GO Biological Process: detection of biotic stimulus | SoyBase | N/A | ISS |
| GO:0009617 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to bacterium | SoyBase | N/A | ISS |
| GO:0009697 | GO-bp | Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009738 | GO-bp | Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009814 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response, incompatible interaction | SoyBase | N/A | ISS |
| GO:0009862 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009867 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to chitin | SoyBase | N/A | ISS |
| GO:0010227 | GO-bp | Annotation by Michelle Graham. GO Biological Process: floral organ abscission | SoyBase | N/A | ISS |
| GO:0010310 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process | SoyBase | N/A | ISS |
| GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0030968 | GO-bp | Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response | SoyBase | N/A | ISS |
| GO:0031348 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response | SoyBase | N/A | ISS |
| GO:0035304 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation | SoyBase | N/A | ISS |
| GO:0042742 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to bacterium | SoyBase | N/A | ISS |
| GO:0043069 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death | SoyBase | N/A | ISS |
| GO:0043900 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of multi-organism process | SoyBase | N/A | ISS |
| GO:0045088 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of innate immune response | SoyBase | N/A | ISS |
| GO:0050832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to fungus | SoyBase | N/A | ISS |
| GO:2000037 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of stomatal complex patterning | SoyBase | N/A | ISS |
| GO:2000038 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of stomatal complex development | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0004672 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein kinase activity | SoyBase | N/A | ISS |
| GO:0004674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity | SoyBase | N/A | ISS |
| GO:0004708 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: MAP kinase kinase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016301 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: kinase activity | SoyBase | N/A | ISS |
| GO:0016772 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups | SoyBase | N/A | ISS |
| KOG0581 | KOG | Mitogen-activated protein kinase kinase (MAP2K) | JGI | ISS | |
| PTHR24361 | Panther | MITOGEN-ACTIVATED KINASE KINASE KINASE | JGI | ISS | |
| PTHR24361:SF31 | Panther | JGI | ISS | ||
| PF00069 | PFAM | Protein kinase domain | JGI | ISS | |
| UniRef100_G7JVJ5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Mitogen-activated protein kinase kinase n=1 Tax=Medicago truncatula RepID=G7JVJ5_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KVS8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KVS8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g23900 not represented in the dataset |
Glyma08g23900 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g00520 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g223400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g23900.1 sequence type=CDS gene model=Glyma08g23900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGGCCGATGCAACTGCCACCGCCTTCCGCTTCCGGGGCCAACCCTGCCCCTGCAACCACCAACAACAACAACAAGGAGCAGCGTCCCCAGCGCCGCCGCAAGGACCTCACGCTGCCGCTGCCGCAGCGAGACACCAACTTGGCGGTGCCGCTTCCTCTGCCGCCATCGACGGCGCCTGCTGCGGCGGCGAGCGGCGGAGCGAGCCAGCAGGCGGCGCAGCAGGTGATCCCTTTCTCGGAGCTGGAGAGACTGAACCGCATCGGGAGCGGGAGCGGCGGGACGGTGTACAAGGTGGTCCACCGCACGAGCGGGCGCGTGTACGCGCTGAAGGTGATATACGGTCACCACGAGGAGTCGGTGCGGCGGCAGATCCACCGGGAAATCCAGATCCTCCGTGACGTGGACGATGCGAACGTGGTGAAGTGTCACGAGATGTACGATCAGAACAGCGAAATCCAGGTGCTGCTGGAGTTCATGGACGGAGGTTCTCTGGAGGGGAAACACATCACGCAGGAGCAGCAGCTGGCAGATCTGTCTCGGCAGATTCTTAGGGGGCTGGCGTACCTGCACCGGCGGCACATCGTCCACAGGGACATCAAGCCGTCGAATCTGCTTATAAACTCGCGGAAGCAGGTGAAGATCGCTGACTTCGGGGTGGGTCGGATACTGAATCAGACGATGGATCCGTGCAATTCGTCGGTGGGGACGATCGCCTACATGAGTCCGGAGAGGATCAATACGGACATAAACGACGGGCAATACGACGCGTACGCAGGGGACATATGGAGCTTTGGGGTTAGCATACTGGAGTTCTACATGGGAAGGTTCCCCTTCGCGGTTGGGAGGCAGGGCGATTGGGCCAGTCTCATGTGCGCCATTTGTATGTCTCAGCCTCCCGAGGCTCCTCCTTCTGCTTCCCCTCACTTCAAGGACTTCATCTTGCGCTGTCTTCAGCGCGATCCCTCTCGCCGCTGGTCTGCTTCCAGGTTGCTCGAACACCCCTTCATTGCTCCGCCGCTGCCCAACCACAATCAGACTCCTCCAAACCTCCATCAGCTACTCCCTCCTCCGCCAAGGCCTCTTCCCTCCTAG
>Glyma08g23900.1 sequence type=predicted peptide gene model=Glyma08g23900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRPMQLPPPSASGANPAPATTNNNNKEQRPQRRRKDLTLPLPQRDTNLAVPLPLPPSTAPAAAASGGASQQAAQQVIPFSELERLNRIGSGSGGTVYKVVHRTSGRVYALKVIYGHHEESVRRQIHREIQILRDVDDANVVKCHEMYDQNSEIQVLLEFMDGGSLEGKHITQEQQLADLSRQILRGLAYLHRRHIVHRDIKPSNLLINSRKQVKIADFGVGRILNQTMDPCNSSVGTIAYMSPERINTDINDGQYDAYAGDIWSFGVSILEFYMGRFPFAVGRQGDWASLMCAICMSQPPEAPPSASPHFKDFILRCLQRDPSRRWSASRLLEHPFIAPPLPNHNQTPPNLHQLLPPPPRPLPS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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