SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G21200 | AT | Annotation by Michelle Graham. TAIR10: proton gradient regulation 7 | chr3:7436091-7437845 FORWARD LENGTH=317 | SoyBase | E_val: 5.00E-123 | ISS |
| GO:0009767 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photosynthetic electron transport chain | SoyBase | N/A | ISS |
| GO:0009791 | GO-bp | Annotation by Michelle Graham. GO Biological Process: post-embryonic development | SoyBase | N/A | ISS |
| GO:0033014 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tetrapyrrole biosynthetic process | SoyBase | N/A | ISS |
| GO:0070455 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of heme biosynthetic process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009534 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0043495 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein anchor | SoyBase | N/A | ISS |
| UniRef100_C6TE45 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TE45_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_E9N732 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Glutamyl-tRNA reductase binding protein n=1 Tax=Nicotiana tabacum RepID=E9N732_TOBAC | SoyBase | E_val: 3.00E-124 | ISS |
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Glyma08g23800 not represented in the dataset |
Glyma08g23800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g222600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g23800.1 sequence type=CDS gene model=Glyma08g23800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTTCTTCAAACGAGGCAATTTGGCACAGCGTGTCCATGGGTCAGACTCACACCCGCAAGCAAAAGAAATAGCTCAGTCTCATTGAGAAGGAGCAATTGTGGCCCAAAATGTTCGGTGTCCCAATTGGAATTGAAGAGTGAGAGTGAGAGCAAAACGAAGCCGTATCCAGCAGAGGCATCGAGGACCATAATGGAGTTGGCTAAGGTGGGCACGCTGTGTACGTTGACCCAAGAGGGTTTGCCCCTTGGTACTGGGGTTCGATTCGCGGTTGACCCTGAACATGGCACTCCCTTGTTCTGCTTCAATTCCACTGACAACACTAACATCCCCTCTTCTCTTCATGTTCAGTTTGAACAATTTGGATTGCGCACTCCTCAGTGCACTATTCAAGGAACCCTTACCAAACCACAGGATCCAAAGCGTCTTGTTTCTGTGTGGAGGAAAAGGTTTGGAGAAGAAGTTGATCGAGATTTTATTTACATTATTGCCGTGGATCGGGTACTCCAATTGGAAGACATTCAGGAGGATGGCATATGGGTCACCTCTTCAGATTACAAAAATGCTCAACCCGATCCTCTTCGAGACTCTGCACACAACTTAGTCACTGAAATCAACACCAACAATATGGAAGACATTACTCGCTTTTGCAATGTCTACGTTGATTTGGATTTCCTGGTCTCCGAGGCAAAGATGCTATGGGTTGATCGCTTGGGCTTTGACATGCGTTTGTCTTCCCCTCACAAAGGCGTGTTTGACGTCCGCATTCCTTTCCCCAGAGAAGTCACCGATGAGAAAGGTGCCAAGTCGACGTTTAATTGTATGTCACAACTCGCTTGGGAGGTAGAAAGAAACTTCCAACATCCAGACTTTTCAAAGGTTAAAGAGTTGAAGCCAGTCAAGTCCCCTTTTCTGTAA
>Glyma08g23800.1 sequence type=predicted peptide gene model=Glyma08g23800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLLQTRQFGTACPWVRLTPASKRNSSVSLRRSNCGPKCSVSQLELKSESESKTKPYPAEASRTIMELAKVGTLCTLTQEGLPLGTGVRFAVDPEHGTPLFCFNSTDNTNIPSSLHVQFEQFGLRTPQCTIQGTLTKPQDPKRLVSVWRKRFGEEVDRDFIYIIAVDRVLQLEDIQEDGIWVTSSDYKNAQPDPLRDSAHNLVTEINTNNMEDITRFCNVYVDLDFLVSEAKMLWVDRLGFDMRLSSPHKGVFDVRIPFPREVTDEKGAKSTFNCMSQLAWEVERNFQHPDFSKVKELKPVKSPFL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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