Glyma08g23750 - SoyBase

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Report for Sequence Feature Glyma08g23750

Feature Type:	gene_model
Chromosome:	Gm08
Start:	18091722
stop:	18093813
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g23750

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G13580	AT	Annotation by Michelle Graham. TAIR10: Ribosomal protein L30/L7 family protein \| chr3:4433809-4435109 FORWARD LENGTH=244	SoyBase	E_val: 6.00E-154	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0015934	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: large ribosomal subunit	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0022625	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic large ribosomal subunit	SoyBase	N/A	ISS
GO:0022626	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
KOG3184	KOG	60S ribosomal protein L7	JGI		ISS
PTHR11524	Panther	60S RIBOSOMAL PROTEIN L7	JGI		ISS
PF00327	PFAM	Ribosomal protein L30p/L7e	JGI		ISS
PF08079	PFAM	Ribosomal L30 N-terminal domain	JGI		ISS
UniRef100_I1KVR2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KVR2_SOYBN	SoyBase	E_val: 5.00E-174	ISS
UniRef100_Q2HVI3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 60S ribosomal protein L7-4 n=1 Tax=Medicago truncatula RepID=Q2HVI3_MEDTR	SoyBase	E_val: 3.00E-154	ISS

Expression Patterns of Glyma08g23750

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g23750 not represented in the dataset	Glyma08g23750 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g23750

Paralog	Evidence	Comments
Glyma07g02270	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g23750 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g222100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g23750

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g23750

Limit To All Plant Sequences

>Glyma08g23750.4   sequence type=transcript   gene model=Glyma08g23750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATCAGAACCGTGGAATGTGAGAAGCCCCAGGGCACACAGCTACTACAAAAACCCGACCTATTTCATTTCACGTGTTGTCTAGCCCGCCGAGAAAACCCTAATTCGCTCGCAGTCACCCAAGAGGCGAATCCTTACCATTGCTCGAGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCTGTTTTGAAGAAGCAGAAGAGAGAGGAGGAATGGGCGTTGGCCAAGAAGCAAGACCTCGAGGCTGCGAAGAAGAAGAGAGCCGAGAGCCGCAAACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTCTATGTCGATCCAGAGGCTAAGCTCTTGTTTATTGTTCGCATTCGTGGTATTAATGCCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAGATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTGCACAGAGTTGAGCCCTATGTGACTTATGGATACCCAAATCTTAAGAGTGTGAGAGAACTTATTTACAAGAGAGGGTATGGAAAGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAGGCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATCATCACTGTTGGGCCTCACTTTAAGGAGGCTAACAACTTCCTTTGGCCATTTAAGCTCAAGGCTCCTTTGGGTGGCTTAAAGAAGAAGAGAAACCACTATGTCGAGGGAGGTGATGCTGGAAACCGGGAGAATTACATCAATGAGCTAATCAGGAGAATGAATTGAGCTGTGGCACTGTTCAATCATTTGATTAGTTGAATGAATCTTTTCTTGTTGGCTTTTAGATCAATATCAGACGATTTTCGTATCTGAAATTTTGAGAATAGCACATTTATGACTTTGCTAAATCTTTTTTGCTAAGGTTGAATTTTTTTCGTTTTTACAAGTATGAGTGGTATATTTTATTACACAACATTCCCATTATTTATATGCGTAGCTTTCTGTTCTGCAATTTTTGGTATGAAACCATGTTGATTTTGAATTT

Coding sequences of Glyma08g23750

Limit To All Plant Sequences

>Glyma08g23750.3   sequence type=CDS   gene model=Glyma08g23750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCTGTTTTGAAGAAGCAGAAGAGAGAGGAGGAATGGGCGTTGGCCAAGAAGCAAGACCTCGAGGCTGCGAAGAAGAAGAGAGCCGAGAGCCGCAAACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTCTATGTCGATCCAGAGGCTAAGCTCTTGTTTATTGTTCGCATTCGTGGTATTAATGCCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAGATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTGCACAGAGTTGAGCCCTATGTGACTTATGGATACCCAAATCTTAAGAGTGTGAGAGAACTTATTTACAAGAGAGGGTATGGAAAGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAGGCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATCATCACTGTTGGGCCTCACTTTAAGGAGGCTAACAACTTCCTTTGGCCATTTAAGCTCAAGGCTCCTTTGGGTGGCTTAAAGAAGAAGAGAAACCACTATGTCGAGGGAGGTGATGCTGGAAACCGGGAGAATTACATCAATGAGCTAATCAGGAGAATGAATTGA

>Glyma08g23750.4   sequence type=CDS   gene model=Glyma08g23750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCTGTTTTGAAGAAGCAGAAGAGAGAGGAGGAATGGGCGTTGGCCAAGAAGCAAGACCTCGAGGCTGCGAAGAAGAAGAGAGCCGAGAGCCGCAAACTCATCTACAACAGAGCTAAGCAGTACGCTAAGGAGTACGATCACCAGGAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGATTCTATGTCGATCCAGAGGCTAAGCTCTTGTTTATTGTTCGCATTCGTGGTATTAATGCCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAGATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTGCACAGAGTTGAGCCCTATGTGACTTATGGATACCCAAATCTTAAGAGTGTGAGAGAACTTATTTACAAGAGAGGGTATGGAAAGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAGGCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATCATCACTGTTGGGCCTCACTTTAAGGAGGCTAACAACTTCCTTTGGCCATTTAAGCTCAAGGCTCCTTTGGGTGGCTTAAAGAAGAAGAGAAACCACTATGTCGAGGGAGGTGATGCTGGAAACCGGGAGAATTACATCAATGAGCTAATCAGGAGAATGAATTGA

Predicted protein sequences of Glyma08g23750

Limit To All Plant Sequences

>Glyma08g23750.3   sequence type=predicted peptide   gene model=Glyma08g23750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGEEVKAVVPESVLKKQKREEEWALAKKQDLEAAKKKRAESRKLIYNRAKQYAKEYDHQEKELIRLKREAKLKGGFYVDPEAKLLFIVRIRGINAMDPKSRKILQLLRLRQIFNGVFLKVNKATVNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRTALTDNSIIEQALGKYGIISTEDLIHEIITVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN*

>Glyma08g23750.4   sequence type=predicted peptide   gene model=Glyma08g23750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGEEVKAVVPESVLKKQKREEEWALAKKQDLEAAKKKRAESRKLIYNRAKQYAKEYDHQEKELIRLKREAKLKGGFYVDPEAKLLFIVRIRGINAMDPKSRKILQLLRLRQIFNGVFLKVNKATVNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRTALTDNSIIEQALGKYGIISTEDLIHEIITVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN*

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