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Report for Sequence Feature Glyma08g23655

Feature Type:gene_model
Chromosome:Gm08
Start:18029714
stop:18030898
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g23655
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G00850AT Annotation by Michelle Graham. TAIR10: GRF1-interacting factor 3 | chr4:357675-358928 FORWARD LENGTH=223 SoyBaseE_val: 3.00E-27ISS
GO:0008283GO-bp Annotation by Michelle Graham. GO Biological Process: cell proliferation SoyBaseN/AISS
GO:0048366GO-bp Annotation by Michelle Graham. GO Biological Process: leaf development SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003713GO-mf Annotation by Michelle Graham. GO Molecular Function: transcription coactivator activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PF05030PFAM SSXT protein (N-terminal region) JGI ISS
UniRef100_B9SVF1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Synovial sarcoma associated ss18 protein, putative n=1 Tax=Ricinus communis RepID=B9SVF1_RICCO SoyBaseE_val: 1.00E-34ISS
UniRef100_UPI0002338C4AUniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002338C4A related cluster n=1 Tax=unknown RepID=UPI0002338C4A SoyBaseE_val: 7.00E-109ISS

Expression Patterns of Glyma08g23655
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g23655 not represented in the dataset
Glyma08g23655 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g23655 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g221100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g23655
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g23655
>Glyma08g23655.1   sequence type=CDS   gene model=Glyma08g23655   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTGTTATGACACATTGCAGTATCTTGATGAGAACAAGAAGCTGATTGTAGCAATAATGGAAAATATGAAACTTGGGAAAATTGATAAATGTGCCGAGTACCAAGAGAAAATTCAACAGAATTTAATGTATTTAGCTACAATTGCTGATTTGCAGCATTCACAAACACTAATCATGCCTCCACAGATGATTCCACCACCCTCTAGGATGCAACCAGAATACTATATGCAACATCCTCAGGGTGTAGCAATGGTTCAGCAACAAGGGATTTTCCCTCCAAATATGCAATTGCAATTTGGTAATCCACAACAACAACTACACCAGCACGCCATTCAAGGGCAGATAACAAGGATAGGTAATGGAACGTATCCCATGCATAGTGAGAATGTTCTTGAAGGTGGCCATAGTGGTGGCTCAACTTCAACTGCAAGTCCAAATAATGCATGTGGTGGAAGCATGCAAGGAACTTCTGAAGATGGAGATGGTTAG
Predicted protein sequences of Glyma08g23655
>Glyma08g23655.1   sequence type=predicted peptide   gene model=Glyma08g23655   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MACYDTLQYLDENKKLIVAIMENMKLGKIDKCAEYQEKIQQNLMYLATIADLQHSQTLIMPPQMIPPPSRMQPEYYMQHPQGVAMVQQQGIFPPNMQLQFGNPQQQLHQHAIQGQITRIGNGTYPMHSENVLEGGHSGGSTSTASPNNACGGSMQGTSEDGDG*






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