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Report for Sequence Feature Glyma08g23410

Feature Type:gene_model
Chromosome:Gm08
Start:17860976
stop:17863151
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g23410
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G80860AT Annotation by Michelle Graham. TAIR10: phospholipid N-methyltransferase | chr1:30388432-30389284 REVERSE LENGTH=164 SoyBaseE_val: 5.00E-86ISS
GO:0008654GO-bp Annotation by Michelle Graham. GO Biological Process: phospholipid biosynthetic process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0043231GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular membrane-bounded organelle SoyBaseN/AISS
GO:0000773GO-mf Annotation by Michelle Graham. GO Molecular Function: phosphatidyl-N-methylethanolamine N-methyltransferase activity SoyBaseN/AISS
GO:0080101GO-mf Annotation by Michelle Graham. GO Molecular Function: phosphatidyl-N-dimethylethanolamine N-methyltransferase activity SoyBaseN/AISS
PTHR15458Panther FAMILY NOT NAMED JGI ISS
PTHR15458:SF7Panther N-METHYLTRANSFERASE JGI ISS
PF04191PFAM Phospholipid methyltransferase JGI ISS
UniRef100_C3VD33UniRef Annotation by Michelle Graham. Most informative UniRef hit: Phospholipid N-methyltransferase n=1 Tax=Glycine max RepID=C3VD33_SOYBN SoyBaseE_val: 2.00E-117ISS
UniRef100_C3VD33UniRef Annotation by Michelle Graham. Best UniRef hit: Phospholipid N-methyltransferase n=1 Tax=Glycine max RepID=C3VD33_SOYBN SoyBaseE_val: 2.00E-117ISS

Expression Patterns of Glyma08g23410
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g23410 not represented in the dataset
Glyma08g23410 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g23410
ParalogEvidenceComments
Glyma07g02601 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g23410 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g218900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g23410
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g23410
>Glyma08g23410.1   sequence type=CDS   gene model=Glyma08g23410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGATTGCGGCGGCTATTGGATTGTTGTCACCGTTTCCGTTCTATTACTGCCTCTGGATTTGGCCACAGTGGTGGGTGGACTTGTGTGGCAGAGGCCGAGAGGCCCGAGATCCATCTAAGGTTATGGCTTACGTTTCTTACTTCTTGAAGCTCGTTCAGTTCATCTCCCTCTTCTATGTTTCTTCTTTCCACTGGCCTCCTCCTTTCTACTTCTGGCCCCTCATTGCCTTTGGCCAATTCCTAAATTTCAGGGTTTATCAGCTACTTGGTGAGACTGGCACATACTATGGTGTACGCTTTGGAAAAACAATTCCCTGGGTAACTGAATTCCCTTTTGGTGTCATCAAAGATCCTCAGTACGTTGGCAGCATCATGAGCATTCTTGCATGCTTTTCGTGGGTTCCTTTTCAATACATTCTCCTTTGGGTTTTAGGATATGTGTTTATGATGCATGTGGAATCAAAGGAAGATCCATCTACTCGTGCCAAGCCACTCCATTGA
Predicted protein sequences of Glyma08g23410
>Glyma08g23410.1   sequence type=predicted peptide   gene model=Glyma08g23410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGIAAAIGLLSPFPFYYCLWIWPQWWVDLCGRGREARDPSKVMAYVSYFLKLVQFISLFYVSSFHWPPPFYFWPLIAFGQFLNFRVYQLLGETGTYYGVRFGKTIPWVTEFPFGVIKDPQYVGSIMSILACFSWVPFQYILLWVLGYVFMMHVESKEDPSTRAKPLH*






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