Glyma08g23320 - SoyBase

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Report for Sequence Feature Glyma08g23320

Feature Type:	gene_model
Chromosome:	Gm08
Start:	17792123
stop:	17800815
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g23320

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G15960	AT	Annotation by Michelle Graham. TAIR10: NRAMP metal ion transporter 6 \| chr1:5482202-5485066 REVERSE LENGTH=527	SoyBase	E_val: 0	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0006828	GO-bp	Annotation by Michelle Graham. GO Biological Process: manganese ion transport	SoyBase	N/A	ISS
GO:0006875	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular metal ion homeostasis	SoyBase	N/A	ISS
GO:0015691	GO-bp	Annotation by Michelle Graham. GO Biological Process: cadmium ion transport	SoyBase	N/A	ISS
GO:0030001	GO-bp	Annotation by Michelle Graham. GO Biological Process: metal ion transport	SoyBase	N/A	ISS
GO:0070574	GO-bp	Annotation by Michelle Graham. GO Biological Process: cadmium ion transmembrane transport	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
GO:0015086	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cadmium ion transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015103	GO-mf	Annotation by Michelle Graham. GO Molecular Function: inorganic anion transmembrane transporter activity	SoyBase	N/A	ISS
GO:0046873	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metal ion transmembrane transporter activity	SoyBase	N/A	ISS
KOG1291	KOG	Mn2+ and Fe2+ transporters of the NRAMP family	JGI		ISS
PTHR11706	Panther	MANGANESE TRANSPORTER	JGI		ISS
PTHR11706:SF10	Panther	METAL TRANSPORTER NRAMP (NRAMP)	JGI		ISS
PF01566	PFAM	Natural resistance-associated macrophage protein	JGI		ISS
UniRef100_B9N9Y7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nramp transporter n=1 Tax=Populus trichocarpa RepID=B9N9Y7_POPTR	SoyBase	E_val: 0	ISS
UniRef100_I1KVL5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KVL5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g23320

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g23320 not represented in the dataset	Glyma08g23320 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g23320

Paralog	Evidence	Comments
Glyma07g02680	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g23320 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g218200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g23320

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g23320

Limit To All Plant Sequences

>Glyma08g23320.3   sequence type=transcript   gene model=Glyma08g23320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGTTTTTTTCATTTTCCACAAGAACGATCAGAACGTGCAAAATACTTATTGACTTATTCCATATGTTTTTAATTATCTTGCAAATGTATTGATTGGTTATTCCATTTTAACCATTCATGATATAAGGACAATTAGTTTTTGGTACATTCATTCCTGAGCAGTTTGCTAAGTTCAGAAGTCAGAAAGAGTTTTGTATTGCAATGATTTTCTCATTGTAACTACTAACAACAACTACAATCTCTTTTCTCAGTTTTCTGCCATCATTTTTTTCCCTTTATGCATACATATTACATAATACTTGCAGTTTCAGTTCGATCGCATGTGACTCGGACTCTTCCATTCTTCCCCCTCTTCATTAATTTCCACGTCTTGTTCTTCACCAAGTTTTATTTATTTATATTACATAGCACCTTAATATGTTGAAGACTTGACTTTTTTCTTCTTCTGAGTTTTGGGTGCAGAAATTAAGGAGTAGACTAGAGAATATGACTGTGACAGGTTCATCTTCTGGGCAGCCTCAATTCATTGCCAGCACCGGTGGTAGCCGGAGCTTCTCAAATGCGCCCTTGATTGAAAACTCAGATACTGATCAAATTGTTGTGCCTGATAGAACAAGCTGGAAAAACTTATTTGCATACATTGGGCCTGGATTTCTTGTTTCCATTGCATATATCGACCCAGGAAACTTTGAGACAGATCTTCAATCAGGGGCACAATATAAATATGAGTTACTTTGGATCATATTGGTGGCGTCATGTGCTGCACTTCTAATTCAAACAATGGCAGCTAATCTTGGGGTTGTCACTGGAATGCACCTAGCAGAGCATTGTAGAGCTGAATATTCTCGGGTGCCTAACTTTATCCTTTGGGTGATTGCTGAAATTGCCGTAGTGGCCTGTGACATTCCTGAAGTAATTGGGACAGCCTTTGCATTGAACATGCTCTTCAACATACCAGTTTGGATTGGTGTTCTTCTGACAGGATCCAGTACATTGATCCTCTTAGCATTACAGCAATATGGGATTAGGAAACTTGAATTCTTCATTGCATTTCTAGTATTCACAATTGCTGGTTGCTTTATGGCTGAGCTTGGATATGCAAAGCCGGTGGCCAAAGAAGTTGTGACGGGTCTTTTTGTTCCAAAACTTCAGGGGCATGGTGCCACTGGTCTTGCAATTTCACTCCTTGGGGCAATGGTTATGCCCCACAATCTCTTCCTCCACTCAGCGCTGGTGCTTTCCAGGAAAATACCGCGATCAGTTCGTGGAATCAAAGAGGCTTGCAGATTTTATATGATAGAAAGTGCCTTTGCTCTTACGGTGGCCTTTCTCATAAATATTTCCGTTATTTCTGTAAGTGGTGCAGTTTGCAATTCTTCAAATTTAAGTGCTGGAGATCAGAATAGCTGTCAGGATTTGGATTTGAACAAGGCCTCCTTTTTATTAAGAAATGTCTTGGGCAAATGGAGTTCAAAACTATTTGCAATTGCTTTACTTGCCTCAGGTCAAAGTTCTACTATAACAGGAACATATGCAGGGCAATATGTCATGCAGGGATTTCTTGATTTGCGACTAAAGTCATGGATTCGGAATCTGCTAACTCGTTGCTTAGCCATTGTTCCTAGTTTGATTGTTGCACTCATTGGTGGCTCTGCTGGAGCTGGGGAGCTCATCATAATTGCATCGATGATCCTATCATTTGAGCTTCCTTTTGCTTTGATTCCACTCCTCAAGTTCACTAGCAGCAAAATCAAGATGGGAGAACATGTCAACTCAATCACGATCTCGGCTATTACTTGGATCATTGGTTCCCTCATCATGGGCATAAATATATACTATTTATTGACTAGCTTTGTCAAATTGCTTCTGCACGTCCACTTAAAAATTGTTACTAAGGTGTTTCTTGGAATATTGGGATTTTCGGGTGTGACATTATATATGGGAGGCATTGCATATCTAGTGTTTCGCAAAAATAAAAAAACTACACACTTTCTGGCATTTAGAACATCGGAAGAACAGCAAGTGGCAAATGAACAAGGTGATATATCAATGTATAATCTGCCAAGAGAAGACATAGTAAGCATGCAATTGCCTCAAAATAGTAGGAGTCCCACAGATATTGATAGAGAAATATCTTAGTGAGGTAGATTAACTAGATACAGTCCTAGCAAAGCTTTTATCAGGGATATATAATAAGATCCCATTTTATGTTAATTTCTAGAAATTGAACATATGCAAAAGGGAACATTCCTCGGGGCAAATTAATTAGTACCAAGCACATCACCTCACATATATGTATAAAGTTACAATCAGTGCGAATGTAGAAAATGGGTGGGATCAATTGTAATCATATGGTAAAAACTATGCAACTATAAAGTTGTGTGTATCTTTGTGTGGGTAACAATTTTATATAAGATCACAAGGATCTCTTTGGAATATTGATGAGCAGAGCTTCTGGTATCACTTGGCTTGAATTGCTAAGGCTTTTTAATTATTCATTTAATGCTTATCTTAACAGCCTTTTTTCTCTTCC

Coding sequences of Glyma08g23320

Limit To All Plant Sequences

>Glyma08g23320.2   sequence type=CDS   gene model=Glyma08g23320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTGTGACAGGTTCATCTTCTGGGCAGCCTCAATTCATTGCCAGCACCGGTGGTAGCCGGAGCTTCTCAAATGCGCCCTTGATTGAAAACTCAGATACTGATCAAATTGTTGTGCCTGATAGAACAAGCTGGAAAAACTTATTTGCATACATTGGGCCTGGATTTCTTGTTTCCATTGCATATATCGACCCAGGAAACTTTGAGACAGATCTTCAATCAGGGGCACAATATAAATATGAGTTACTTTGGATCATATTGGTGGCGTCATGTGCTGCACTTCTAATTCAAACAATGGCAGCTAATCTTGGGGTTGTCACTGGAATGCACCTAGCAGAGCATTGTAGAGCTGAATATTCTCGGGTGCCTAACTTTATCCTTTGGGTGATTGCTGAAATTGCCGTAGTGGCCTGTGACATTCCTGAAGTAATTGGGACAGCCTTTGCATTGAACATGCTCTTCAACATACCAGTTTGGATTGGTGTTCTTCTGACAGGATCCAGTACATTGATCCTCTTAGCATTACAGCAATATGGGATTAGGAAACTTGAATTCTTCATTGCATTTCTAGTATTCACAATTGCTGGTTGCTTTATGGCTGAGCTTGGATATGCAAAGCCGGTGGCCAAAGAAGTTGTGACGGGTCTTTTTGTTCCAAAACTTCAGGGGCATGGTGCCACTGGTCTTGCAATTTCACTCCTTGGGGCAATGGTTATGCCCCACAATCTCTTCCTCCACTCAGCGCTGGTGCTTTCCAGGAAAATACCGCGATCAGTTCGTGGAATCAAAGAGGCTTGCAGATTTTATATGATAGAAAGTGCCTTTGCTCTTACGGTGGCCTTTCTCATAAATATTTCCGTTATTTCTGTAAGTGGTGCAGTTTGCAATTCTTCAAATTTAAGTGCTGGAGATCAGAATAGCTGTCAGGATTTGGATTTGAACAAGGCCTCCTTTTTATTAAGAAATGTCTTGGGCAAATGGAGTTCAAAACTATTTGCAATTGCTTTACTTGCCTCAGGTCAAAGTTCTACTATAACAGGAACATATGCAGGGCAATATGTCATGCAGGGATTTCTTGATTTGCGACTAAAGTCATGGATTCGGAATCTGCTAACTCGTTGCTTAGCCATTGTTCCTAGTTTGATTGTTGCACTCATTGGTGGCTCTGCTGGAGCTGGGGAGCTCATCATAATTGCATCGATGATCCTATCATTTGAGCTTCCTTTTGCTTTGATTCCACTCCTCAAGTTCACTAGCAGCAAAATCAAGATGGGAGAACATGTCAACTCAATCACGATCTCGGCTATTACTTGGATCATTGGTTCCCTCATCATGGGCATAAATATATACTATTTATTGACTAGCTTTGTCAAATTGCTTCTGCACGTCCACTTAAAAATTGTTACTAAGGTGTTTCTTGGAATATTGGGATTTTCGGGTGTGACATTATATATGGGAGGCATTGCATATCTAGTGTTTCGCAAAAATAAAAAAACTACACACTTTCTGGCATTTAGAACATCGGAAGAACAGCAAGTGGCAAATGAACAAGGTGATATATCAATGTATAATCTGCCAAGAGAAGACATAGTAAGCATGCAATTGCCTCAAAATAGTAGGAGTCCCACAGATATTGATAGAGAAATATCTTAG

>Glyma08g23320.3   sequence type=CDS   gene model=Glyma08g23320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTGTGACAGGTTCATCTTCTGGGCAGCCTCAATTCATTGCCAGCACCGGTGGTAGCCGGAGCTTCTCAAATGCGCCCTTGATTGAAAACTCAGATACTGATCAAATTGTTGTGCCTGATAGAACAAGCTGGAAAAACTTATTTGCATACATTGGGCCTGGATTTCTTGTTTCCATTGCATATATCGACCCAGGAAACTTTGAGACAGATCTTCAATCAGGGGCACAATATAAATATGAGTTACTTTGGATCATATTGGTGGCGTCATGTGCTGCACTTCTAATTCAAACAATGGCAGCTAATCTTGGGGTTGTCACTGGAATGCACCTAGCAGAGCATTGTAGAGCTGAATATTCTCGGGTGCCTAACTTTATCCTTTGGGTGATTGCTGAAATTGCCGTAGTGGCCTGTGACATTCCTGAAGTAATTGGGACAGCCTTTGCATTGAACATGCTCTTCAACATACCAGTTTGGATTGGTGTTCTTCTGACAGGATCCAGTACATTGATCCTCTTAGCATTACAGCAATATGGGATTAGGAAACTTGAATTCTTCATTGCATTTCTAGTATTCACAATTGCTGGTTGCTTTATGGCTGAGCTTGGATATGCAAAGCCGGTGGCCAAAGAAGTTGTGACGGGTCTTTTTGTTCCAAAACTTCAGGGGCATGGTGCCACTGGTCTTGCAATTTCACTCCTTGGGGCAATGGTTATGCCCCACAATCTCTTCCTCCACTCAGCGCTGGTGCTTTCCAGGAAAATACCGCGATCAGTTCGTGGAATCAAAGAGGCTTGCAGATTTTATATGATAGAAAGTGCCTTTGCTCTTACGGTGGCCTTTCTCATAAATATTTCCGTTATTTCTGTAAGTGGTGCAGTTTGCAATTCTTCAAATTTAAGTGCTGGAGATCAGAATAGCTGTCAGGATTTGGATTTGAACAAGGCCTCCTTTTTATTAAGAAATGTCTTGGGCAAATGGAGTTCAAAACTATTTGCAATTGCTTTACTTGCCTCAGGTCAAAGTTCTACTATAACAGGAACATATGCAGGGCAATATGTCATGCAGGGATTTCTTGATTTGCGACTAAAGTCATGGATTCGGAATCTGCTAACTCGTTGCTTAGCCATTGTTCCTAGTTTGATTGTTGCACTCATTGGTGGCTCTGCTGGAGCTGGGGAGCTCATCATAATTGCATCGATGATCCTATCATTTGAGCTTCCTTTTGCTTTGATTCCACTCCTCAAGTTCACTAGCAGCAAAATCAAGATGGGAGAACATGTCAACTCAATCACGATCTCGGCTATTACTTGGATCATTGGTTCCCTCATCATGGGCATAAATATATACTATTTATTGACTAGCTTTGTCAAATTGCTTCTGCACGTCCACTTAAAAATTGTTACTAAGGTGTTTCTTGGAATATTGGGATTTTCGGGTGTGACATTATATATGGGAGGCATTGCATATCTAGTGTTTCGCAAAAATAAAAAAACTACACACTTTCTGGCATTTAGAACATCGGAAGAACAGCAAGTGGCAAATGAACAAGGTGATATATCAATGTATAATCTGCCAAGAGAAGACATAGTAAGCATGCAATTGCCTCAAAATAGTAGGAGTCCCACAGATATTGATAGAGAAATATCTTAG

Predicted protein sequences of Glyma08g23320

Limit To All Plant Sequences

>Glyma08g23320.2   sequence type=predicted peptide   gene model=Glyma08g23320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTVTGSSSGQPQFIASTGGSRSFSNAPLIENSDTDQIVVPDRTSWKNLFAYIGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALLIQTMAANLGVVTGMHLAEHCRAEYSRVPNFILWVIAEIAVVACDIPEVIGTAFALNMLFNIPVWIGVLLTGSSTLILLALQQYGIRKLEFFIAFLVFTIAGCFMAELGYAKPVAKEVVTGLFVPKLQGHGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRGIKEACRFYMIESAFALTVAFLINISVISVSGAVCNSSNLSAGDQNSCQDLDLNKASFLLRNVLGKWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKSWIRNLLTRCLAIVPSLIVALIGGSAGAGELIIIASMILSFELPFALIPLLKFTSSKIKMGEHVNSITISAITWIIGSLIMGINIYYLLTSFVKLLLHVHLKIVTKVFLGILGFSGVTLYMGGIAYLVFRKNKKTTHFLAFRTSEEQQVANEQGDISMYNLPREDIVSMQLPQNSRSPTDIDREIS*

>Glyma08g23320.3   sequence type=predicted peptide   gene model=Glyma08g23320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTVTGSSSGQPQFIASTGGSRSFSNAPLIENSDTDQIVVPDRTSWKNLFAYIGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALLIQTMAANLGVVTGMHLAEHCRAEYSRVPNFILWVIAEIAVVACDIPEVIGTAFALNMLFNIPVWIGVLLTGSSTLILLALQQYGIRKLEFFIAFLVFTIAGCFMAELGYAKPVAKEVVTGLFVPKLQGHGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRGIKEACRFYMIESAFALTVAFLINISVISVSGAVCNSSNLSAGDQNSCQDLDLNKASFLLRNVLGKWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKSWIRNLLTRCLAIVPSLIVALIGGSAGAGELIIIASMILSFELPFALIPLLKFTSSKIKMGEHVNSITISAITWIIGSLIMGINIYYLLTSFVKLLLHVHLKIVTKVFLGILGFSGVTLYMGGIAYLVFRKNKKTTHFLAFRTSEEQQVANEQGDISMYNLPREDIVSMQLPQNSRSPTDIDREIS*

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