Glyma08g23260 - SoyBase

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Report for Sequence Feature Glyma08g23260

Feature Type:	gene_model
Chromosome:	Gm08
Start:	17737090
stop:	17739201
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g23260

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G32060	AT	Annotation by Michelle Graham. TAIR10: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein \| chr2:13639228-13640104 REVERSE LENGTH=144	SoyBase	E_val: 5.00E-64	ISS
GO:0001510	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA methylation	SoyBase	N/A	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0009853	GO-bp	Annotation by Michelle Graham. GO Biological Process: photorespiration	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0022626	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome	SoyBase	N/A	ISS
GO:0022627	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic small ribosomal subunit	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
KOG3406	KOG	40S ribosomal protein S12	JGI		ISS
PTHR11843	Panther	40S RIBOSOMAL PROTEIN S12	JGI		ISS
PF01248	PFAM	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family	JGI		ISS
UniRef100_I1KVL0	UniRef	Annotation by Michelle Graham. Best UniRef hit: 40S ribosomal protein S12 n=1 Tax=Glycine max RepID=I1KVL0_SOYBN	SoyBase	E_val: 1.00E-95	ISS
UniRef100_I1KVL0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 40S ribosomal protein S12 n=1 Tax=Glycine max RepID=I1KVL0_SOYBN	SoyBase	E_val: 1.00E-95	ISS

Expression Patterns of Glyma08g23260

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g23260 not represented in the dataset	Glyma08g23260 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g23260

Paralog	Evidence	Comments
Glyma07g02720	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g23260 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g217700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g23260

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g23260

Limit To All Plant Sequences

>Glyma08g23260.3   sequence type=transcript   gene model=Glyma08g23260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATATAGCAATTGCTCAGATTAAATATACGGTCGGACGTAGGCCCAATAGAACCCAATTCAGAGGTAAAGGAGCATTTTAGTAAATAAATAGTGAGGTTGTAGCTAGGGTTTTTTCTCATATAAGATCGATTATACTCACAAGTTTTGTTCTTTCCTAGCAATTCGGCGCAATCGTCTTCTGCTTCAAGCTTGCTACTGTTGGAGATTTGGAAGGAGAGCTTGTTATTCTCTATCAACAAGGAAAATGTCAGGTGAAGAGGTTGTTGTTGCAGCTGAGCCAGCTGCTGCCATCCCAGGCGAGCCTATGGATATCATGACTGCCTTGCAACTTGTGCTCAGAAAATCTCTGGCTTATGGTGGTCTTGCACGAGGCCTTCACGAAGGGGCAAAAGTGATTGAGAAGCATGCTGCACAACTCTGTGTTCTAGCAGAAGACTGTGACCAGCCTGACTATGTTAAACTGGTTAAGGCCCTTTGTGCAGAGCACAATGTTAGCCTGCTGACAGTTCCGAGTGCAAAGACCCTTGGAGAATGGGCTGGTTTGTGCAAGATTGATTCCGAAGGAAAAGCTAGGAAGGTTACTGGTTGCTCCTGTGTGGTTGTGAAGGATTTTGGTGAGGAGCATGAAGCCTATAACGTCGTTCTGCAGCATGTGAAATCTCAATGAGTTGCAAGATTCATAGATTTTATGCATTTCATTTTGGGTTATTCCATGAGAATGAATTTTGCCTTGTAGCTGGATTATATCTACCTTGGGTTTTGATTGTTTAATATGACTGCCACATTCTAAATGTTGTTCCTTTTTTCTTTCTTTCTTTGATGCATTGCTGTTACTCTAATTAGGAACTCTTGTTTCACATTTAATCATTAAAGAAGGGAAAGTTACATGATAACAATCTGACTCTTTATTCGGCATTAATGCTAATTCTTGCGTTGCCCGTG

>Glyma08g23260.4   sequence type=transcript   gene model=Glyma08g23260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATATAGCAATTGCTCAGATTAAATATACGGTCGGACGTAGGCCCAATAGAACCCAATTCAGAGGTAAAGGAGCATTTTAGTAAATAAATAGTGAGGTTGTAGCTAGGGTTTTTTCTCATATAAGATCGATTATACTCACAAGTTTTGTTCTTTCCTAGCAATTCGGCGCAATCGTCTTCTGCTTCAAGGAAGGAGAGCTTGTTATTCTCTATCAACAAGGAAAATGTCAGGTGAAGAGGTTGTTGTTGCAGCTGAGCCAGCTGCTGCCATCCCAGGCGAGCCTATGGATATCATGACTGCCTTGCAACTTGTGCTCAGAAAATCTCTGGCTTATGGTGGTCTTGCACGAGGCCTTCACGAAGGGGCAAAAGTGATTGAGAAGCATGCTGCACAACTCTGTGTTCTAGCAGAAGACTGTGACCAGCCTGACTATGTTAAACTGGTTAAGGCCCTTTGTGCAGAGCACAATGTTAGCCTGCTGACAGTTCCGAGTGCAAAGACCCTTGGAGAATGGGCTGGTTTGTGCAAGATTGATTCCGAAGGAAAAGCTAGGAAGGTTACTGGTTGCTCCTGTGTGGTTGTGAAGGATTTTGGTGAGGAGCATGAAGCCTATAACGTCGTTCTGCAGCATGTGAAATCTCAATGAGTTGCAAGATTCATAGATTTTATGCATTTCATTTTGGGTTATTCCATGAGAATGAATTTTGCCTTGTAGCTGGATTATATCTACCTTGGGTTTTGATTGTTTAATATGACTGCCACATTCTAAATGTTGTTCCTTTTTTCTTTCTTTCTTTGATGCATTGCTGTTACTCTAATTAGGAACTCTTGTTTCACATTTAATCATTAAAGAAGGGAAAGTTACATGATAACAATCTGACTCTTTATTCGGCATTAATGCTAATTCTTGCGTTGCCCGTG

>Glyma08g23260.5   sequence type=transcript   gene model=Glyma08g23260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATATAGCAATTGCTCAGATTAAATATACGGTCGGACGTAGGCCCAATAGAACCCAATTCAGAGGTAAAGGAGCATTTTAGTAAATAAATAGTGAGGTTGTAGCTAGGGTTTTTTCTCATATAAGATCGATTATACTCACAAGTTTTGTTCTTTCCTAGCAATTCGGCGCAATCGTCTTCTGCTTCAAGGAAGGAGAGCTTGTTATTCTCTATCAACAAGGAAAATGTCAGGTGAAGAGGTTGTTGTTGCAGCTGAGCCAGCTGCTGCCATCCCAGGCGAGCCTATGGATATCATGACTGCCTTGCAACTTGTGCTCAGAAAATCTCTGGCTTATGGTGGTCTTGCACGAGGCCTTCACGAAGGGGCAAAAGTGATTGAGAAGCATGCTGCACAACTCTGTGTTCTAGCAGAAGACTGTGACCAGCCTGACTATGTTAAACTGGTTAAGGCCCTTTGTGCAGAGCACAATGTTAGCCTGCTGACAGTTCCGAGTGCAAAGACCCTTGGAGAATGGGCTGGTTTGTGCAAGATTGATTCCGAAGGAAAAGCTAGGAAGGTTACTGGTTGCTCCTGTGTGGTTGTGAAGGTATGAAATGTGTAGAAATGAAAATGTTTGTTGATAGTGTTTTACAACGCATTATCATTATTTAACTTTTGGCTGCTTGCAGGATTTTGGTGAGGAGCATGAAGCCTATAACGTCGTTCTGCAGCATGTGAAATCTCAATGAGTTGCAAGATTCATAGATTTTATGCATTTCATTTTGGGTTATTCCATGAGAATGAATTTTGCCTTGTAGCTGGATTATATCTACCTTGGGTTTTGATTGTTTAATATGACTGCCACATTCTAAATGTTGTTCCTTTTTTCTTTCTTTCTTTGATGCATTGCTGTTACTCTAATTAGGAACTCTTGTTTCACATTTAATCATTAAAGAAGGGAAAGTTACATGATAACAATCTGACTCTTTATTCGGCATTAATGCTAATTCTTGCGTTGCCCGTG

Coding sequences of Glyma08g23260

Limit To All Plant Sequences

>Glyma08g23260.2   sequence type=CDS   gene model=Glyma08g23260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAGGTGAAGAGGTTGTTGTTGCAGCTGAGCCAGCTGCTGCCATCCCAGGCGAGCCTATGGATATCATGACTGCCTTGCAACTTGTGCTCAGAAAATCTCTGGCTTATGGTGGTCTTGCACGAGGCCTTCACGAAGGGGCAAAAGTGATTGAGAAGCATGCTGCACAACTCTGTGTTCTAGCAGAAGACTGTGACCAGCCTGACTATGTTAAACTGGTTAAGGCCCTTTGTGCAGAGCACAATGTTAGCCTGCTGACAGTTCCGAGTGCAAAGACCCTTGGAGAATGGGCTGGTGTAAGTGTCATTGACAGTAAACTTTCTTGTTGA

>Glyma08g23260.3   sequence type=CDS   gene model=Glyma08g23260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAGGTGAAGAGGTTGTTGTTGCAGCTGAGCCAGCTGCTGCCATCCCAGGCGAGCCTATGGATATCATGACTGCCTTGCAACTTGTGCTCAGAAAATCTCTGGCTTATGGTGGTCTTGCACGAGGCCTTCACGAAGGGGCAAAAGTGATTGAGAAGCATGCTGCACAACTCTGTGTTCTAGCAGAAGACTGTGACCAGCCTGACTATGTTAAACTGGTTAAGGCCCTTTGTGCAGAGCACAATGTTAGCCTGCTGACAGTTCCGAGTGCAAAGACCCTTGGAGAATGGGCTGGTTTGTGCAAGATTGATTCCGAAGGAAAAGCTAGGAAGGTTACTGGTTGCTCCTGTGTGGTTGTGAAGGATTTTGGTGAGGAGCATGAAGCCTATAACGTCGTTCTGCAGCATGTGAAATCTCAATGA

>Glyma08g23260.4   sequence type=CDS   gene model=Glyma08g23260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAGGTGAAGAGGTTGTTGTTGCAGCTGAGCCAGCTGCTGCCATCCCAGGCGAGCCTATGGATATCATGACTGCCTTGCAACTTGTGCTCAGAAAATCTCTGGCTTATGGTGGTCTTGCACGAGGCCTTCACGAAGGGGCAAAAGTGATTGAGAAGCATGCTGCACAACTCTGTGTTCTAGCAGAAGACTGTGACCAGCCTGACTATGTTAAACTGGTTAAGGCCCTTTGTGCAGAGCACAATGTTAGCCTGCTGACAGTTCCGAGTGCAAAGACCCTTGGAGAATGGGCTGGTTTGTGCAAGATTGATTCCGAAGGAAAAGCTAGGAAGGTTACTGGTTGCTCCTGTGTGGTTGTGAAGGATTTTGGTGAGGAGCATGAAGCCTATAACGTCGTTCTGCAGCATGTGAAATCTCAATGA

>Glyma08g23260.5   sequence type=CDS   gene model=Glyma08g23260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAGGTGAAGAGGTTGTTGTTGCAGCTGAGCCAGCTGCTGCCATCCCAGGCGAGCCTATGGATATCATGACTGCCTTGCAACTTGTGCTCAGAAAATCTCTGGCTTATGGTGGTCTTGCACGAGGCCTTCACGAAGGGGCAAAAGTGATTGAGAAGCATGCTGCACAACTCTGTGTTCTAGCAGAAGACTGTGACCAGCCTGACTATGTTAAACTGGTTAAGGCCCTTTGTGCAGAGCACAATGTTAGCCTGCTGACAGTTCCGAGTGCAAAGACCCTTGGAGAATGGGCTGGTTTGTGCAAGATTGATTCCGAAGGAAAAGCTAGGAAGGTTACTGGTTGCTCCTGTGTGGTTGTGAAGGTATGA

Predicted protein sequences of Glyma08g23260

Limit To All Plant Sequences

>Glyma08g23260.2   sequence type=predicted peptide   gene model=Glyma08g23260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGEEVVVAAEPAAAIPGEPMDIMTALQLVLRKSLAYGGLARGLHEGAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGVSVIDSKLSC*

>Glyma08g23260.3   sequence type=predicted peptide   gene model=Glyma08g23260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGEEVVVAAEPAAAIPGEPMDIMTALQLVLRKSLAYGGLARGLHEGAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKSQ*

>Glyma08g23260.4   sequence type=predicted peptide   gene model=Glyma08g23260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGEEVVVAAEPAAAIPGEPMDIMTALQLVLRKSLAYGGLARGLHEGAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKSQ*

>Glyma08g23260.5   sequence type=predicted peptide   gene model=Glyma08g23260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGEEVVVAAEPAAAIPGEPMDIMTALQLVLRKSLAYGGLARGLHEGAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKV*

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