Glyma08g23240 - SoyBase

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Report for Sequence Feature Glyma08g23240

Feature Type:	gene_model
Chromosome:	Gm08
Start:	17723740
stop:	17728797
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g23240

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G15910	AT	Annotation by Michelle Graham. TAIR10: XH/XS domain-containing protein \| chr1:5465951-5468723 FORWARD LENGTH=634	SoyBase	E_val: 0	ISS
GO:0080188	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA-directed DNA methylation	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
GO:0003725	GO-mf	Annotation by Michelle Graham. GO Molecular Function: double-stranded RNA binding	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0043621	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein self-association	SoyBase	N/A	ISS
PTHR21596	Panther	RIBONUCLEASE P PROTEIN SUBUNIT P38-RELATED	JGI		ISS
PTHR21596:SF3	Panther	TRANSCRIPTION FACTOR X1-LIKE	JGI		ISS
PF03468	PFAM	XS domain	JGI		ISS
PF03469	PFAM	XH domain	JGI		ISS
PF03470	PFAM	XS zinc finger domain	JGI		ISS
UniRef100_I1KVK5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KVK5_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9S9P3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: T24D18.1 protein n=1 Tax=Arabidopsis thaliana RepID=Q9S9P3_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g23240

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g23240 not represented in the dataset	Glyma08g23240 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g23240

Paralog	Evidence	Comments
Glyma07g02740	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g23240 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g217500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g23240

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g23240

Limit To All Plant Sequences

>Glyma08g23240.4   sequence type=transcript   gene model=Glyma08g23240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAATACCCCTTAATAAAAAAGCCATTTTTGTTGAGTGTTGGAGCATTCCGAAAGACTGACATAGTGATATTCTGATAGCAACAAGGGCGTTAGGAATCAGAATCACACACTGCGGCGTACACAATTCACTCACCATCAAAGCTATCATTGGGAATCAACCAATAGCAAATGAAGGCTTTCCGTGCAGCGTCGACACAGCTGATCATTTCTGGCACCGCACTCACCCAAATCAAGTACTTCTTCAACTGACTAGGGCTTCCCTTTCTCATCTCTCACTTTCACCGCGCCGATCGTTTCACTCTCCCAAGTAACTTCAATGGACTACAGCTCCGAAGAAGATTCTGATATCAGTGAATCTGAGATTGAAGAGTACGCAGAGAAACCATATGAACAGTTAAGGGCTGGGAAATACAAGGTTAAAAATTTGAATGGAACTCTTAGGTGTCCTTACTGTGCTGGGAAGAAAAAACAAGAATTCAAATATAAGGATTTATTGCAACATGCATCAGGAGTTGGTAAGGGTTCTGCTAACAGAAGTGCACAACAAAAGGCAAACCACCTTGCTCTAGCAAAGTATTTGGAGACTGACCTAGCTAGTGAAGCAGAGTCAATCCAGCGCCCAGCTCCACCCCAAGCTGTCAATCAACCTTTGTTGCAAGAAGATCTTTATGTTTGGCCTTGGACAGGTATAATTGTTAACATAAAGGGGAAATCAATTGATTCTGGATATTGGTTGAAGGAATTTGCTAAATTCAGACCAATAGATTTCCGTATATTCTTAAAAGATGATGACCTGATTGCTGAGGCTGTGGTAGACTTCAATAACGACTGGAATGGTTTCATGAATGCAAGTGAGTTTGAGAAGTCATTTGAAGCTGCACGCCACGGTAAGAAGGATTGGAATTCAAGGAAGTTAGAAGCTGGCTCAAACATTTATGGATGGGTTGCCCGGGAAGATGATTATAATTGTGGAGGGCCAATCGGGGAATACCTCCGCAACAAAGGAAGGTTGAGGACAGTTTCAGATATTGTTCAAGAGGCATCTGTAAGCAGGAATAATATTGTGACAAACTTGACTAATGAAATTGAGATAACAAACGAAAACCTTGACAAAATGCAATATAAGTTTAATGAAAAGACTATGTCCTTGAGTAGGATGCTTGAGGAGAAAGATAAGCTTCACAATGCCTTTGAAGAAGAATCAAGGAATATGCAGCGTAGAGCTCGTAACGAGGTACGAAGGATCTTGGATGAACAAGAAAAGCTGAGTAGTGAATTGGAGGAAAAAAAGCGGAAACTTGATTCCTGGAGTAGAGATCTAAACAAACGTGAGGCCCTAACTGATCAAGAGAAGAAGAAACTAGATGAGGACAAGAAGAAGAAAGATTTGAGGAATGAATCACTCCAATTGGCTTCAAAGGAACAAAAGATAGCTGATGAGAATGTCTTGAGGCTTGTTGAAGAGCAAAAGCGAGAGAAAGAGGAGGCCTATAACAAGATACTTCAGTTGGAAAAACAGTTAGATGCCAAACAAAAGTTGGAAATGGAAATTGAAGAGTTAAAAGGGAAATTGCAAGTTATGAAGCATCTTGGAGATGAAGATGATGCAGCTGTTCAGAATAAAATAAAGGAGATGAATGATGAATTGCAAGAAAAAGTAGACAATTTGGAAAATATGGAGGCCATGAATCAAACCCTCATCGTGAAGGAGCGCCAAAGTAATGATGAACTGCAGGAAGCTCGTAAAGAATTAATAAACGGGTTAGACGATATGCTGAATGGTCCTAGAACTAATATTGGGCTCAAGAGAATGGGAGAGCTTGATCAGAAGATTTTTGTGAATAACTGCAAGAAAAGATTTCCTCTTGAAGAAGCTGGGACCAAAGGTGTCGAGCTTTGCTCTTTGTGGCAGGAGAACGTGAAGAATTCAGCTTGGCATCCATTTAAAGTGGTCACAGTTGATGATAAACCAGAGAATATTATAAATGAGGAAGATGAGAAGTTAAGAAGCCTCAAGCAGGAATGGGGGGATGAGATATATTCAGCTGTTGTTACAGCCCTAAAAGAAATAAATGAATACAATGCAAGTGGTGGGTATACTGTTAAAGAGCTATGGAACTTCAAGGAAAAAAGAAAGGCTACATTGAAAGAAGTTATCAATTATATTATGGATCATATCAAGCCACTTAAGCGCAAGAGAGCTTAGGCAAAAGGTTAGTGTTTCTGACTTCCAGTTGAGTTTTGGTGAGAATTGTTTTGTGTGGCTGATTAATGTGCTCAGATTGATATTCCTGTGATGGCCACACTGAATAAAAATAGAATTTTGAAAGAAAGAAAGAATAAAAAAACTTGGTTGCATCCCTGCATGTGACAACTTTAGGCTCGTATTGGGTGCAGTAATAAATAATTTGTATGTAAACTATGAAGTGAGCCATTTAGGATTAAGTAATCTATTGGTAGTATGTTGCTGACAATCCTTATTTTCTAAGTTTTGCATCACCATCTGTTGCTTTCTGATTTATTCAAATCACTGCATCAATAAGTTTTTGCTTTACTAGAAGTTGCTTAGTTTTACTATGTTTATTATGAATAATTTTAGAGGCAGAAGTTGAAAATGAAATGGTGATGACTGATAGAATAAAATATACCAGTTTTATATATTTGTTTTCAGAAAGACAAGAAATTCCTATATGTACATATTTCAGCTTAGTTAACATATCTCTTAATATTTGAACGAATGTTCCATCCAAGTCTTTGCAGGGGATAAATGCCTGATAGCTCAACCGGTAGATGGAAGTATCACCGTTTCTTGGGCTTATACGAGCCATTTGAAACAAGCTACTGAAGATAAGCGTAGAATGTGATAACATTTCATCAATAATGGATTTGAACATCTGTAATCTGGCAAATATCCCTAAATACTAACAACGAATCAATTTTCTGAGGTTGTGTCCGCGGATTTTATGCCAATGGTTGCCCATCTCTATATATATAATTTTAGCCATGGAGCTTATATTTGTGTGGCTGATTAATGAGCATATAGCCAATAGTTAGGGATTTTTGCCAATGATCTACTGACCAATGTGGCTGATTAAAGGGGGGAAAATGTGTTTTTAGTCCTTATATTATTTTTATGAATCGTGGTCAAGGTCTCTACTTTTAGCCAATGTAGTGATTTGTGGATTGCATTAACCAATAGATAAGCCATGGTTTTTTTAAAATATATACCTTTATTTGCTATTATTTCCATATTTTTATATTATAGAATAGATACT

Coding sequences of Glyma08g23240

Limit To All Plant Sequences

>Glyma08g23240.3   sequence type=CDS   gene model=Glyma08g23240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACTACAGCTCCGAAGAAGATTCTGATATCAGTGAATCTGAGATTGAAGAGTACGCAGAGAAACCATATGAACAGTTAAGGGCTGGGAAATACAAGGTTAAAAATTTGAATGGAACTCTTAGGTGTCCTTACTGTGCTGGGAAGAAAAAACAAGAATTCAAATATAAGGATTTATTGCAACATGCATCAGGAGTTGGTAAGGGTTCTGCTAACAGAAGTGCACAACAAAAGGCAAACCACCTTGCTCTAGCAAAGTATTTGGAGACTGACCTAGCTAGTGAAGCAGAGTCAATCCAGCGCCCAGCTCCACCCCAAGCTGTCAATCAACCTTTGTTGCAAGAAGATCTTTATGTTTGGCCTTGGACAGGTATAATTGTTAACATAAAGGGGAAATCAATTGATTCTGGATATTGGTTGAAGGAATTTGCTAAATTCAGACCAATAGATTTCCGTATATTCTTAAAAGATGATGACCTGATTGCTGAGGCTGTGGTAGACTTCAATAACGACTGGAATGGTTTCATGAATGCAAGTGAGTTTGAGAAGTCATTTGAAGCTGCACGCCACGGTAAGAAGGATTGGAATTCAAGGAAGTTAGAAGCTGGCTCAAACATTTATGGATGGGTTGCCCGGGAAGATGATTATAATTGTGGAGGGCCAATCGGGGAATACCTCCGCAACAAAGGAAGGTTGAGGACAGTTTCAGATATTGTTCAAGAGGCATCTGTAAGCAGGAATAATATTGTGACAAACTTGACTAATGAAATTGAGATAACAAACGAAAACCTTGACAAAATGCAATATAAGTTTAATGAAAAGACTATGTCCTTGAGTAGGATGCTTGAGGAGAAAGATAAGCTTCACAATGCCTTTGAAGAAGAATCAAGGAATATGCAGCGTAGAGCTCGTAACGAGGTACGAAGGATCTTGGATGAACAAGAAAAGCTGAGTAGTGAATTGGAGGAAAAAAAGCGGAAACTTGATTCCTGGAGTAGAGATCTAAACAAACGTGAGGCCCTAACTGATCAAGAGAAGAAGAAACTAGATGAGGACAAGAAGAAGAAAGATTTGAGGAATGAATCACTCCAATTGGCTTCAAAGGAACAAAAGATAGCTGATGAGAATGTCTTGAGGCTTGTTGAAGAGCAAAAGCGAGAGAAAGAGGAGGCCTATAACAAGATACTTCAGTTGGAAAAACAGTTAGATGCCAAACAAAAGTTGGAAATGGAAATTGAAGAGTTAAAAGGGAAATTGCAAGTTATGAAGCATCTTGGAGATGAAGATGATGCAGCTGTTCAGAATAAAATAAAGGAGATGAATGATGAATTGCAAGAAAAAGTAGACAATTTGGAAAATATGGAGGCCATGAATCAAACCCTCATCGTGAAGGAGCGCCAAAGTAATGATGAACTGCAGGAAGCTCGTAAAGAATTAATAAACGGGTTAGACGATATGCTGAATGGTCCTAGAACTAATATTGGGCTCAAGAGAATGGGAGAGCTTGATCAGAAGATTTTTGTGAATAACTGCAAGAAAAGATTTCCTCTTGAAGAAGCTGGGACCAAAGGTGTCGAGCTTTGCTCTTTGTGGCAGGAGAACGTGAAGAATTCAGCTTGGCATCCATTTAAAGTGGTCACAGTTGATGATAAACCAGAGAATATTATAAATGAGGAAGATGAGAAGTTAAGAAGCCTCAAGCAGGAATGGGGGGATGAGATATATTCAGCTGTTGTTACAGCCCTAAAAGAAATAAATGAATACAATGCAAGTGGTGGGTATACTGTTAAAGAGCTATGGAACTTCAAGGAAAAAAGAAAGGCTACATTGAAAGAAGTTATCAATTATATTATGGATCATATCAAGCCACTTAAGCGCAAGAGAGCTTAG

>Glyma08g23240.4   sequence type=CDS   gene model=Glyma08g23240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACTACAGCTCCGAAGAAGATTCTGATATCAGTGAATCTGAGATTGAAGAGTACGCAGAGAAACCATATGAACAGTTAAGGGCTGGGAAATACAAGGTTAAAAATTTGAATGGAACTCTTAGGTGTCCTTACTGTGCTGGGAAGAAAAAACAAGAATTCAAATATAAGGATTTATTGCAACATGCATCAGGAGTTGGTAAGGGTTCTGCTAACAGAAGTGCACAACAAAAGGCAAACCACCTTGCTCTAGCAAAGTATTTGGAGACTGACCTAGCTAGTGAAGCAGAGTCAATCCAGCGCCCAGCTCCACCCCAAGCTGTCAATCAACCTTTGTTGCAAGAAGATCTTTATGTTTGGCCTTGGACAGGTATAATTGTTAACATAAAGGGGAAATCAATTGATTCTGGATATTGGTTGAAGGAATTTGCTAAATTCAGACCAATAGATTTCCGTATATTCTTAAAAGATGATGACCTGATTGCTGAGGCTGTGGTAGACTTCAATAACGACTGGAATGGTTTCATGAATGCAAGTGAGTTTGAGAAGTCATTTGAAGCTGCACGCCACGGTAAGAAGGATTGGAATTCAAGGAAGTTAGAAGCTGGCTCAAACATTTATGGATGGGTTGCCCGGGAAGATGATTATAATTGTGGAGGGCCAATCGGGGAATACCTCCGCAACAAAGGAAGGTTGAGGACAGTTTCAGATATTGTTCAAGAGGCATCTGTAAGCAGGAATAATATTGTGACAAACTTGACTAATGAAATTGAGATAACAAACGAAAACCTTGACAAAATGCAATATAAGTTTAATGAAAAGACTATGTCCTTGAGTAGGATGCTTGAGGAGAAAGATAAGCTTCACAATGCCTTTGAAGAAGAATCAAGGAATATGCAGCGTAGAGCTCGTAACGAGGTACGAAGGATCTTGGATGAACAAGAAAAGCTGAGTAGTGAATTGGAGGAAAAAAAGCGGAAACTTGATTCCTGGAGTAGAGATCTAAACAAACGTGAGGCCCTAACTGATCAAGAGAAGAAGAAACTAGATGAGGACAAGAAGAAGAAAGATTTGAGGAATGAATCACTCCAATTGGCTTCAAAGGAACAAAAGATAGCTGATGAGAATGTCTTGAGGCTTGTTGAAGAGCAAAAGCGAGAGAAAGAGGAGGCCTATAACAAGATACTTCAGTTGGAAAAACAGTTAGATGCCAAACAAAAGTTGGAAATGGAAATTGAAGAGTTAAAAGGGAAATTGCAAGTTATGAAGCATCTTGGAGATGAAGATGATGCAGCTGTTCAGAATAAAATAAAGGAGATGAATGATGAATTGCAAGAAAAAGTAGACAATTTGGAAAATATGGAGGCCATGAATCAAACCCTCATCGTGAAGGAGCGCCAAAGTAATGATGAACTGCAGGAAGCTCGTAAAGAATTAATAAACGGGTTAGACGATATGCTGAATGGTCCTAGAACTAATATTGGGCTCAAGAGAATGGGAGAGCTTGATCAGAAGATTTTTGTGAATAACTGCAAGAAAAGATTTCCTCTTGAAGAAGCTGGGACCAAAGGTGTCGAGCTTTGCTCTTTGTGGCAGGAGAACGTGAAGAATTCAGCTTGGCATCCATTTAAAGTGGTCACAGTTGATGATAAACCAGAGAATATTATAAATGAGGAAGATGAGAAGTTAAGAAGCCTCAAGCAGGAATGGGGGGATGAGATATATTCAGCTGTTGTTACAGCCCTAAAAGAAATAAATGAATACAATGCAAGTGGTGGGTATACTGTTAAAGAGCTATGGAACTTCAAGGAAAAAAGAAAGGCTACATTGAAAGAAGTTATCAATTATATTATGGATCATATCAAGCCACTTAAGCGCAAGAGAGCTTAG

Predicted protein sequences of Glyma08g23240

Limit To All Plant Sequences

>Glyma08g23240.3   sequence type=predicted peptide   gene model=Glyma08g23240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDYSSEEDSDISESEIEEYAEKPYEQLRAGKYKVKNLNGTLRCPYCAGKKKQEFKYKDLLQHASGVGKGSANRSAQQKANHLALAKYLETDLASEAESIQRPAPPQAVNQPLLQEDLYVWPWTGIIVNIKGKSIDSGYWLKEFAKFRPIDFRIFLKDDDLIAEAVVDFNNDWNGFMNASEFEKSFEAARHGKKDWNSRKLEAGSNIYGWVAREDDYNCGGPIGEYLRNKGRLRTVSDIVQEASVSRNNIVTNLTNEIEITNENLDKMQYKFNEKTMSLSRMLEEKDKLHNAFEEESRNMQRRARNEVRRILDEQEKLSSELEEKKRKLDSWSRDLNKREALTDQEKKKLDEDKKKKDLRNESLQLASKEQKIADENVLRLVEEQKREKEEAYNKILQLEKQLDAKQKLEMEIEELKGKLQVMKHLGDEDDAAVQNKIKEMNDELQEKVDNLENMEAMNQTLIVKERQSNDELQEARKELINGLDDMLNGPRTNIGLKRMGELDQKIFVNNCKKRFPLEEAGTKGVELCSLWQENVKNSAWHPFKVVTVDDKPENIINEEDEKLRSLKQEWGDEIYSAVVTALKEINEYNASGGYTVKELWNFKEKRKATLKEVINYIMDHIKPLKRKRA*

>Glyma08g23240.4   sequence type=predicted peptide   gene model=Glyma08g23240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDYSSEEDSDISESEIEEYAEKPYEQLRAGKYKVKNLNGTLRCPYCAGKKKQEFKYKDLLQHASGVGKGSANRSAQQKANHLALAKYLETDLASEAESIQRPAPPQAVNQPLLQEDLYVWPWTGIIVNIKGKSIDSGYWLKEFAKFRPIDFRIFLKDDDLIAEAVVDFNNDWNGFMNASEFEKSFEAARHGKKDWNSRKLEAGSNIYGWVAREDDYNCGGPIGEYLRNKGRLRTVSDIVQEASVSRNNIVTNLTNEIEITNENLDKMQYKFNEKTMSLSRMLEEKDKLHNAFEEESRNMQRRARNEVRRILDEQEKLSSELEEKKRKLDSWSRDLNKREALTDQEKKKLDEDKKKKDLRNESLQLASKEQKIADENVLRLVEEQKREKEEAYNKILQLEKQLDAKQKLEMEIEELKGKLQVMKHLGDEDDAAVQNKIKEMNDELQEKVDNLENMEAMNQTLIVKERQSNDELQEARKELINGLDDMLNGPRTNIGLKRMGELDQKIFVNNCKKRFPLEEAGTKGVELCSLWQENVKNSAWHPFKVVTVDDKPENIINEEDEKLRSLKQEWGDEIYSAVVTALKEINEYNASGGYTVKELWNFKEKRKATLKEVINYIMDHIKPLKRKRA*

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