Glyma08g23220 - SoyBase

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Report for Sequence Feature Glyma08g23220

Feature Type:	gene_model
Chromosome:	Gm08
Start:	17694605
stop:	17699244
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g23220

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G15880	AT	Annotation by Michelle Graham. TAIR10: golgi snare 11 \| chr1:5458718-5460089 REVERSE LENGTH=223	SoyBase	E_val: 2.00E-104	ISS
GO:0006869	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid transport	SoyBase	N/A	ISS
GO:0006888	GO-bp	Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport	SoyBase	N/A	ISS
GO:0006891	GO-bp	Annotation by Michelle Graham. GO Biological Process: intra-Golgi vesicle-mediated transport	SoyBase	N/A	ISS
GO:0010351	GO-bp	Annotation by Michelle Graham. GO Biological Process: lithium ion transport	SoyBase	N/A	ISS
GO:0016558	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix	SoyBase	N/A	ISS
GO:0048193	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0000149	GO-mf	Annotation by Michelle Graham. GO Molecular Function: SNARE binding	SoyBase	N/A	ISS
KOG3208	KOG	SNARE protein GS28	JGI		ISS
PTHR21094	Panther	GOS-28 SNARE- RELATED	JGI		ISS
PF12352	PFAM	Snare region anchored in the vesicle membrane C-terminus	JGI		ISS
UniRef100_I1KVK0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Golgi SNAP receptor complex member 1 n=3 Tax=Glycine max RepID=I1KVK0_SOYBN	SoyBase	E_val: 1.00E-128	ISS
UniRef100_I1KVK0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Golgi SNAP receptor complex member 1 n=3 Tax=Glycine max RepID=I1KVK0_SOYBN	SoyBase	E_val: 1.00E-128	ISS

Expression Patterns of Glyma08g23220

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g23220 not represented in the dataset	Glyma08g23220 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g23220

Paralog	Evidence	Comments
Glyma07g02870	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g23220 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g217200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g23220

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g23220

Limit To All Plant Sequences

>Glyma08g23220.3   sequence type=transcript   gene model=Glyma08g23220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAAAAAGGAAGAGGAACGAAGCAATCGCAAGTCGTCTGTTCTGTCCCGCGGGAGCAGACGACCTGTCTTCATCGCCAAACAACCTCAAAAACATTCATCAACGTTCACTATTAATCCATCCATCATTAAGTAAGAAAATAAGGCAAGAAAACTTGAAGCTCAGTTGGATGAGCAGATGAATTCTTATCGTAAATTGGTTTCTAATAATGTTTCTACAAAAGCTGACGCTGCAGAGAGTGATCTAGAGTCTTGGATTGAGCGTTTACTAAAACAACTCCAACAAGTAAACACACAGATGCAAGCTTGGGTATCATCTGGTGGTTCAGAAATGGTTTCTCATACTTTGACTAGACACCAAGAAATTCTTCAAGATCTCACCCAGGAGTTTTATCGTCTTCGCTCAAGTCTTAAAGCTAAGCAAGAACATGCTTCACTGCTAGAAGATTTTAAAGAATTTGATCGAACAAGATTAGATTTGGAACAAGTAGACTCTGAACAGCATGCACTCCTAAAAGAACGCACATCTATCAGCCGAAATACAGGACATATGGACAATGTAATTTCACAAGCACAAGCAACACTAGGAGCACTTGTCTTCCAACGTTCGACATTTGGTGGTATCAATTCAAAGCTCGGCAATGTGAGCAGTCGCCTCCCAACGGTAAATAGCATACTTTCAGCAATAAAGAGAAAAAAGTCAATGGATACCATCATACTTTCCCTTGTTGCAGCCGTATGCACATTTCTCATTTTCATCTACTGGCTATCCAAGTGAAGAAGTTGTTGTTTTTGTTGGGTGCTCCAACTTTTGTATGTTGTCTATTGAGCTTAGTAGCTCGTGCCGTGCCGAAACACATTTTGCAAGTAGTATGTTTTTTAATCCATTGTTTATCCATGTAACAGAAAGCAATACCGAGTAAAGATCAGAAATTACGTAGTTCCATTTCTTGGTTCCGGTTTCATATATCATAACTTGTAGTGAGTGAAAAGAATATATATATTTTTTACGGTGTGTTTGACTCAATTTATTTTGAAGAATTATTTTTATATCAGTTTGT

>Glyma08g23220.4   sequence type=transcript   gene model=Glyma08g23220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAAAAAGGAAGAGGAACGAAGCAATCGCAAGTCGTCTGTTCTGTCCCGCGGGAGCAGACGACCTGTCTTCATCGCCAAACAACCTCAAAAACATTCATCAACGTTCACTATTAATCCATCCATCATTAAGTAAGAAAATAAGGTTCGATTTTTTTATCTTTGTTTTGCTTCTGATCCATCATGGAGGTGCCGAGTTCCTGGGATGCCCTTCGCAAACAGCTGACGCTGCAGAGAGTGATCTAGAGTCTTGGATTGAGCGTTTACTAAAACAACTCCAACAAGTAAACACACAGATGCAAGCTTGGGTATCATCTGGTGGTTCAGAAATGGTTTCTCATACTTTGACTAGACACCAAGAAATTCTTCAAGATCTCACCCAGGAGTTTTATCGTCTTCGCTCAAGTCTTAAAGCTAAGCAAGAACATGCTTCACTGCTAGAAGATTTTAAAGAATTTGATCGAACAAGATTAGATTTGGAACAAGTAGACTCTGAACAGCATGCACTCCTAAAAGAACGCACATCTATCAGCCGAAATACAGGACATATGGACAATGTAATTTCACAAGCACAAGCAACACTAGGAGCACTTGTCTTCCAACGTTCGACATTTGGTGGTATCAATTCAAAGCTCGGCAATGTGAGCAGTCGCCTCCCAACGGTAAATAGCATACTTTCAGCAATAAAGAGAAAAAAGTCAATGGATACCATCATACTTTCCCTTGTTGCAGCCGTATGCACATTTCTCATTTTCATCTACTGGCTATCCAAGTGAAGAAGTTGTTGTTTTTGTTGGGTGCTCCAACTTTTGTATGTTGTCTATTGAGCTTAGTAGCTCGTGCCGTGCCGAAACACATTTTGCAAGTAGTATGTTTTTTAATCCATTGTTTATCCATGTAACAGAAAGCAATACCGAGTAAAGATCAGAAATTACGTAGTTCCATTTCTTGGTTCCGGTTTCATATATCATAACTTGTAGTGAGTGAAAAGAATATATATATTTTTTACGGTGTGTTTGACTCAATTTATTTTGAAGAATTATTTTTATATCAGTTTGT

Coding sequences of Glyma08g23220

Limit To All Plant Sequences

>Glyma08g23220.1   sequence type=CDS   gene model=Glyma08g23220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGTGCCGAGTTCCTGGGATGCCCTTCGCAAACAGGCAAGAAAACTTGAAGCTCAGTTGGATGAGCAGATGAATTCTTATCGTAAATTGGTTTCTAATAATGTTTCTACAAAAGCTGACGCTGCAGAGAGTGATCTAGAGTCTTGGATTGAGCGTTTACTAAAACAACTCCAACAAGTAAACACACAGATGCAAGCTTGGGTATCATCTGGTGGTTCAGAAATGGTTTCTCATACTTTGACTAGACACCAAGAAATTCTTCAAGATCTCACCCAGGAGTTTTATCGTCTTCGCTCAAGTCTTAAAGCTAAGCAAGAACATGCTTCACTGCTAGAAGATTTTAAAGAATTTGATCGAACAAGATTAGATTTGGAACAAGTAGACTCTGAACAGCATGCACTCCTAAAAGAACGCACATCTATCAGCCGAAATACAGGACATATGGACAATGTAATTTCACAAGCACAAGCAACACTAGGAGCACTTGTCTTCCAACGTTCGACATTTGGTGGTATCAATTCAAAGCTCGGCAATGTGAGCAGTCGCCTCCCAACGGTAAATAGCATACTTTCAGCAATAAAGAGAAAAAAGTCAATGGATACCATCATACTTTCCCTTGTTGCAGCCGTATGCACATTTCTCATTTTCATCTACTGGCTATCCAAGTGA

>Glyma08g23220.3   sequence type=CDS   gene model=Glyma08g23220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATTCTTATCGTAAATTGGTTTCTAATAATGTTTCTACAAAAGCTGACGCTGCAGAGAGTGATCTAGAGTCTTGGATTGAGCGTTTACTAAAACAACTCCAACAAGTAAACACACAGATGCAAGCTTGGGTATCATCTGGTGGTTCAGAAATGGTTTCTCATACTTTGACTAGACACCAAGAAATTCTTCAAGATCTCACCCAGGAGTTTTATCGTCTTCGCTCAAGTCTTAAAGCTAAGCAAGAACATGCTTCACTGCTAGAAGATTTTAAAGAATTTGATCGAACAAGATTAGATTTGGAACAAGTAGACTCTGAACAGCATGCACTCCTAAAAGAACGCACATCTATCAGCCGAAATACAGGACATATGGACAATGTAATTTCACAAGCACAAGCAACACTAGGAGCACTTGTCTTCCAACGTTCGACATTTGGTGGTATCAATTCAAAGCTCGGCAATGTGAGCAGTCGCCTCCCAACGGTAAATAGCATACTTTCAGCAATAAAGAGAAAAAAGTCAATGGATACCATCATACTTTCCCTTGTTGCAGCCGTATGCACATTTCTCATTTTCATCTACTGGCTATCCAAGTGA

>Glyma08g23220.4   sequence type=CDS   gene model=Glyma08g23220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAAAAAGGAAGAGGAACGAAGCAATCGCAAGTCGTCTGTTCTGTCCCGCGGGAGCAGACGACCTGTCTTCATCGCCAAACAACCTCAAAAACATTCATCAACGTTCACTATTAATCCATCCATCATTAAGTAAGAAAATAAGGTTCGATTTTTTTATCTTTGTTTTGCTTCTGATCCATCATGGAGGTGCCGAGTTCCTGGGATGCCCTTCGCAAACAGCTGACGCTGCAGAGAGTGATCTAGAGTCTTGGATTGAGCGTTTACTAAAACAACTCCAACAAGTAAACACACAGATGCAAGCTTGGGTATCATCTGGTGGTTCAGAAATGGTTTCTCATACTTTGACTAGACACCAAGAAATTCTTCAAGATCTCACCCAGGAGTTTTATCGTCTTCGCTCAAGTCTTAAAGCTAAGCAAGAACATGCTTCACTGCTAGAAGATTTTAAAGAATTTGATCGAACAAGATTAGATTTGGAACAAGTAGACTCTGAACAGCATGCACTCCTAAAAGAACGCACATCTATCAGCCGAAATACAGGACATATGGACAATGTAATTTCACAAGCACAAGCAACACTAGGAGCACTTGTCTTCCAACGTTCGACATTTGGTGGTATCAATTCAAAGCTCGGCAATGTGAGCAGTCGCCTCCCAACGGTAAATAGCATACTTTCAGCAATAAAGAGAAAAAAGTCAATGGATACCATCATACTTTCCCTTGTTGCAGCCGTATGCACATTTCTCATTTTCATCTACTGGCTATCCAAGTGA

Predicted protein sequences of Glyma08g23220

Limit To All Plant Sequences

>Glyma08g23220.1   sequence type=predicted peptide   gene model=Glyma08g23220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEVPSSWDALRKQARKLEAQLDEQMNSYRKLVSNNVSTKADAAESDLESWIERLLKQLQQVNTQMQAWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFKEFDRTRLDLEQVDSEQHALLKERTSISRNTGHMDNVISQAQATLGALVFQRSTFGGINSKLGNVSSRLPTVNSILSAIKRKKSMDTIILSLVAAVCTFLIFIYWLSK*

>Glyma08g23220.3   sequence type=predicted peptide   gene model=Glyma08g23220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNSYRKLVSNNVSTKADAAESDLESWIERLLKQLQQVNTQMQAWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFKEFDRTRLDLEQVDSEQHALLKERTSISRNTGHMDNVISQAQATLGALVFQRSTFGGINSKLGNVSSRLPTVNSILSAIKRKKSMDTIILSLVAAVCTFLIFIYWLSK*

>Glyma08g23220.4   sequence type=predicted peptide   gene model=Glyma08g23220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
EKRKRNEAIASRLFCPAGADDLSSSPNNLKNIHQRSLLIHPSLSKKIRFDFFIFVLLLIHHGGAEFLGCPSQTADAAESDLESWIERLLKQLQQVNTQMQAWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFKEFDRTRLDLEQVDSEQHALLKERTSISRNTGHMDNVISQAQATLGALVFQRSTFGGINSKLGNVSSRLPTVNSILSAIKRKKSMDTIILSLVAAVCTFLIFIYWLSK*

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