Glyma08g23170 - SoyBase

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Report for Sequence Feature Glyma08g23170

Feature Type:	gene_model
Chromosome:	Gm08
Start:	17657613
stop:	17662421
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g23170

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G15860	AT	Annotation by Michelle Graham. TAIR10: Domain of unknown function (DUF298) \| chr1:5455055-5456741 FORWARD LENGTH=227	SoyBase	E_val: 2.00E-127	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
KOG3077	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR12281	Panther	RP42 RELATED	JGI		ISS
PF03556	PFAM	Domain of unknown function (DUF298)	JGI		ISS
UniRef100_B9SMU9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Defective in cullin neddylation protein, putative n=1 Tax=Ricinus communis RepID=B9SMU9_RICCO	SoyBase	E_val: 7.00E-130	ISS
UniRef100_I1KVJ3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KVJ3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g23170

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g23170 not represented in the dataset	Glyma08g23170 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g23170

Paralog	Evidence	Comments
Glyma07g02920	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g23170 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g216700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g23170

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g23170

Limit To All Plant Sequences

>Glyma08g23170.5   sequence type=transcript   gene model=Glyma08g23170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAATGCCAAGGTACAAGCTACTTAAATGAGACTGTGTAAGGCACCACCCCACACCACAACTTCAGCGCATCCACGTCATCACCCTCAACCTCAACCTCTCCGAGCGAGAACCAGACACAAGAAAGAAAACGTGTTGCGTCAGTGTTACCCCTTTCTCCTTCTCTTTATCTTTCCTGAATTTGGCGCGTTTCGATTCTTCTTCTTCCGAATCAGAGAGAGTCTGGATTTCTTGTTGAAGATGCGACGCTCTTCTGCATCCAAAAAGACGGGTCAATCCAATTCCACCCCCATCGCCGCCGATCTCTTCCGCTCCGCTTCAAGTAAGGCAAGCTCGAAGGAATCAGAGCGAATTGATAGTCTATTCTATTCGTATGCCAATGGGTCTACTGGGTTGATTGACCCAGAAGGAATTGAAACACTTTGTGCTGATATGGAGGTGGACCATACAGATGTGAGGGTTTTGATGCTTGCGTGGAAAATGAAAGCTGAGGAGCAAGGATATTTTACCTTGGATGAGTGGAGGAGAGGCTTAAAAGCATTAAGGGCCGATACTGTAAGTAAATTGAAGAAGGCACTCCCAGACCTAGAAAAAGAGGTCAGGAGGCCATCAAACTTTGCAGATTTCTATTCTTATGCTTTCCAATATTGTTTAACAGAGGAGAAACAGAAAAGCATTGATATAGAGAGCATTTGTGAGTTACTTACTCTTGTTTTGGGTTCAACATTTCCAGCCCAAGTCAACTTGTTTGTGGAATATTTGAAGACTCAAAATGATTACAAGGTCATAAACATGGATCAATGGATGGGATTTTTCCGCTTTTGCAATGAGATAAGTTTTCCAACCCTTAATGACTATGATTCTGAACTTGCCTGGCCCTTGATCTTGGATAACTTCGTTGAATGGCTGCGAGAAAAACAAAAATAATCGATAAGCCACCCGATTCTCTGTAACTGCAACCACTGGTGCAGTTGAGGCTAGATACAAGCTTTACATTGTGACCACTGCCAATGCCAACAACATTTATCATACATATAAGAGCTTTTATAGAACTGCCAATGCCAAACCTTTATGTACGTGGGAATCAAGGTTACCAAATCAGGCTAATTTTTAATTTGTGAATTGCCAAATTCAGAGACAATGAAAAATAATTTTAAATATATCATATATAGATATCTAGTGTTCCAAGTAGTATATACTAATTTTAAATTAGAAATATATAAAACAATTTAACCATAAGTTTCATAAACACAA

>Glyma08g23170.6   sequence type=transcript   gene model=Glyma08g23170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAATGCCAAGGTACAAGCTACTTAAATGAGACTGTGTAAGGCACCACCCCACACCACAACTTCAGCGCATCCACGTCATCACCCTCAACCTCAACCTCTCCGAGCGAGAACCAGACACAAGAAAGAAAACGTGTTGCGTCAGTGTTACCCCTTTCTCCTTCTCTTTATCTTTCCTGAATTTGGCGCGTTTCGATTCTTCTTCTTCCGAATCAGAGAGAGTCTGGATTTCTTGTTGAAGATGCGACGCTCTTCTGCATCCAAAAAGACGGGTCAATCCAATTCCACCCCCATCGCCGCCGATCTCTTCCGCTCCGCTTCAAGTAAGGCAAGCTCGAAGGAATCAGAGCGAATTGATAGTCTATTCTATTCGTATGCCAATGGGTCTACTGGGTTGATTGACCCAGAAGGAATTGAAACACTTTGTGCTGATATGGAGGTGGACCATACAGATGTGAGGGTTTTGATGCTTGCGTGGAAAATGAAAGCTGAGGAGCAAGGATATTTTACCTTGGATGAGTGGAGGAGAGGCTTAAAAGCATTAAGGGCCGATACTGTAAGTAAATTGAAGAAGGCACTCCCAGACCTAGAAAAAGAGGTCAGGAGGCCATCAAACTTTGCAGATTTCTATTCTTATGCTTTCCAATATTGTTTAACAGAGGAGAAACAGAAAAGCATTGATATAGAGAGCATTTGTGAGTTACTTACTCTTGTTTTGGGTTCAACATTTCCAGCCCAAGTCAACTTGTTTGTGGAATATTTGAAGACTCAAAATGATTACAAGGTCATAAACATGGATCAATGGATGGGATTTTTCCGCTTTTGCAATGAGATAAGTTTTCCAACCCTTAATGACTATGATTCTGAACTTGCCTGGCCCTTGATCTTGGATAACTTCGTTGAATGGCTGCGAGAAAAACAAAAATAATCGATAAGCCACCCGATTCTCTGTAACTGCAACCACTGCACCCCTTTTAAGAGAAACTGTCGGATTCTGCAATTAAATCAGATAGATGCCTTGCGGCTCCGTTTATTATACTTAACAAGTTATTGTTCTTTTGTTTGCCCAGTTTCTTATTTTGGGCATTTTAAACACAAACCATTATTACTTGTATTTACATTTTCCATTATATGCTATAGGTGCAGTTGAGGCTAGATACAAGCTTTACATTGTGACCACTGCCAATGCCAACAACATTTATCATACATATAAGAGCTTTTATAGAACTGCCAATGCCAAACCTTTATGTACGTGGGAATCAAGGTTACCAAATCAGGCTAATTTTTAATTTGTGAATTGCCAAATTCAGAGACAATGAAAAATAATTTTAAATATATCATATATAGATATCTAGTGTTCCAAGTAGTATATACTAATTTTAAATTAGAAATATATAAAACAATTTAACCATAAGTTTCATAAACACAA

Coding sequences of Glyma08g23170

Limit To All Plant Sequences

>Glyma08g23170.4   sequence type=CDS   gene model=Glyma08g23170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGACTGTGTAAGGCACCACCCCACACCACAACTTCAGCGCATCCACGTCATCACCCTCAACCTCAACCTCTCCGAGCGAGAACCAGACACAAGAAAGAAAACGTGTTGCGTCAGTGTTACCCCTTTCTCCTTCTCTTTATCTTTCCTGAATTTGGCGCGTTTCGATTCTTCTTCTTCCGAATCAGAGAGAGTCTGGATTTCTTGTTGAAGATGCGACGCTCTTCTGCATCCAAAAAGACGGGTCAATCCAATTCCACCCCCATCGCCGCCGATCTCTTCCGCTCCGCTTCAAGTAAGGCAAGCTCGAAGGAATCAGAGCGAATTGATAGTCTATTCTATTCGTATGCCAATGGGTCTACTGGGTTGATTGACCCAGAAGGAATTGAAACACTTTGTGCTGATATGGAGGTGGACCATACAGATGTGAGGGTTTTGATGCTTGCGTGGAAAATGAAAGCTGAGGAGCAAGGATATTTTACCTTGGATGAGTGGAGGAGAGGCTTAAAAGCATTAAGGGCCGATACTGTAAGTAAATTGAAGAAGGCACTCCCAGACCTAGAAAAAGAGGTCAGGAGGCCATCAAACTTTGCAGATTTCTATTCTTATGCTTTCCAATATTGTTTAACAGAGGAGAAACAGAAAAGCATTGATATAGAGAGCATTTGTGAGTTACTTACTCTTGTTTTGGGTTCAACATTTCCAGCCCAAGTCAACTTGTTTGTGGAATATTTGAAGACTCAAAATGATTACAAGGTCATAAACATGGATCAATGGATGGGATTTTTCCGCTTTTGCAATGAGATAAGTTTTCCAACCCTTAATGACTATGATTCTGAACTTGCCTGGCCCTTGATCTTGGATAACTTCGTTGAATGGCTGCGAGAAAAACAAAAATAA

>Glyma08g23170.5   sequence type=CDS   gene model=Glyma08g23170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGACTGTGTAAGGCACCACCCCACACCACAACTTCAGCGCATCCACGTCATCACCCTCAACCTCAACCTCTCCGAGCGAGAACCAGACACAAGAAAGAAAACGTGTTGCGTCAGTGTTACCCCTTTCTCCTTCTCTTTATCTTTCCTGAATTTGGCGCGTTTCGATTCTTCTTCTTCCGAATCAGAGAGAGTCTGGATTTCTTGTTGAAGATGCGACGCTCTTCTGCATCCAAAAAGACGGGTCAATCCAATTCCACCCCCATCGCCGCCGATCTCTTCCGCTCCGCTTCAAGTAAGGCAAGCTCGAAGGAATCAGAGCGAATTGATAGTCTATTCTATTCGTATGCCAATGGGTCTACTGGGTTGATTGACCCAGAAGGAATTGAAACACTTTGTGCTGATATGGAGGTGGACCATACAGATGTGAGGGTTTTGATGCTTGCGTGGAAAATGAAAGCTGAGGAGCAAGGATATTTTACCTTGGATGAGTGGAGGAGAGGCTTAAAAGCATTAAGGGCCGATACTGTAAGTAAATTGAAGAAGGCACTCCCAGACCTAGAAAAAGAGGTCAGGAGGCCATCAAACTTTGCAGATTTCTATTCTTATGCTTTCCAATATTGTTTAACAGAGGAGAAACAGAAAAGCATTGATATAGAGAGCATTTGTGAGTTACTTACTCTTGTTTTGGGTTCAACATTTCCAGCCCAAGTCAACTTGTTTGTGGAATATTTGAAGACTCAAAATGATTACAAGGTCATAAACATGGATCAATGGATGGGATTTTTCCGCTTTTGCAATGAGATAAGTTTTCCAACCCTTAATGACTATGATTCTGAACTTGCCTGGCCCTTGATCTTGGATAACTTCGTTGAATGGCTGCGAGAAAAACAAAAATAA

>Glyma08g23170.6   sequence type=CDS   gene model=Glyma08g23170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGACTGTGTAAGGCACCACCCCACACCACAACTTCAGCGCATCCACGTCATCACCCTCAACCTCAACCTCTCCGAGCGAGAACCAGACACAAGAAAGAAAACGTGTTGCGTCAGTGTTACCCCTTTCTCCTTCTCTTTATCTTTCCTGAATTTGGCGCGTTTCGATTCTTCTTCTTCCGAATCAGAGAGAGTCTGGATTTCTTGTTGAAGATGCGACGCTCTTCTGCATCCAAAAAGACGGGTCAATCCAATTCCACCCCCATCGCCGCCGATCTCTTCCGCTCCGCTTCAAGTAAGGCAAGCTCGAAGGAATCAGAGCGAATTGATAGTCTATTCTATTCGTATGCCAATGGGTCTACTGGGTTGATTGACCCAGAAGGAATTGAAACACTTTGTGCTGATATGGAGGTGGACCATACAGATGTGAGGGTTTTGATGCTTGCGTGGAAAATGAAAGCTGAGGAGCAAGGATATTTTACCTTGGATGAGTGGAGGAGAGGCTTAAAAGCATTAAGGGCCGATACTGTAAGTAAATTGAAGAAGGCACTCCCAGACCTAGAAAAAGAGGTCAGGAGGCCATCAAACTTTGCAGATTTCTATTCTTATGCTTTCCAATATTGTTTAACAGAGGAGAAACAGAAAAGCATTGATATAGAGAGCATTTGTGAGTTACTTACTCTTGTTTTGGGTTCAACATTTCCAGCCCAAGTCAACTTGTTTGTGGAATATTTGAAGACTCAAAATGATTACAAGGTCATAAACATGGATCAATGGATGGGATTTTTCCGCTTTTGCAATGAGATAAGTTTTCCAACCCTTAATGACTATGATTCTGAACTTGCCTGGCCCTTGATCTTGGATAACTTCGTTGAATGGCTGCGAGAAAAACAAAAATAA

Predicted protein sequences of Glyma08g23170

Limit To All Plant Sequences

>Glyma08g23170.4   sequence type=predicted peptide   gene model=Glyma08g23170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRLCKAPPHTTTSAHPRHHPQPQPLRARTRHKKENVLRQCYPFLLLFIFPEFGAFRFFFFRIRESLDFLLKMRRSSASKKTGQSNSTPIAADLFRSASSKASSKESERIDSLFYSYANGSTGLIDPEGIETLCADMEVDHTDVRVLMLAWKMKAEEQGYFTLDEWRRGLKALRADTVSKLKKALPDLEKEVRRPSNFADFYSYAFQYCLTEEKQKSIDIESICELLTLVLGSTFPAQVNLFVEYLKTQNDYKVINMDQWMGFFRFCNEISFPTLNDYDSELAWPLILDNFVEWLREKQK*

>Glyma08g23170.5   sequence type=predicted peptide   gene model=Glyma08g23170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRLCKAPPHTTTSAHPRHHPQPQPLRARTRHKKENVLRQCYPFLLLFIFPEFGAFRFFFFRIRESLDFLLKMRRSSASKKTGQSNSTPIAADLFRSASSKASSKESERIDSLFYSYANGSTGLIDPEGIETLCADMEVDHTDVRVLMLAWKMKAEEQGYFTLDEWRRGLKALRADTVSKLKKALPDLEKEVRRPSNFADFYSYAFQYCLTEEKQKSIDIESICELLTLVLGSTFPAQVNLFVEYLKTQNDYKVINMDQWMGFFRFCNEISFPTLNDYDSELAWPLILDNFVEWLREKQK*

>Glyma08g23170.6   sequence type=predicted peptide   gene model=Glyma08g23170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRLCKAPPHTTTSAHPRHHPQPQPLRARTRHKKENVLRQCYPFLLLFIFPEFGAFRFFFFRIRESLDFLLKMRRSSASKKTGQSNSTPIAADLFRSASSKASSKESERIDSLFYSYANGSTGLIDPEGIETLCADMEVDHTDVRVLMLAWKMKAEEQGYFTLDEWRRGLKALRADTVSKLKKALPDLEKEVRRPSNFADFYSYAFQYCLTEEKQKSIDIESICELLTLVLGSTFPAQVNLFVEYLKTQNDYKVINMDQWMGFFRFCNEISFPTLNDYDSELAWPLILDNFVEWLREKQK*

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