SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G33590 | AT | Annotation by Michelle Graham. TAIR10: NAD(P)-binding Rossmann-fold superfamily protein | chr2:14224622-14226365 FORWARD LENGTH=321 | SoyBase | E_val: 2.00E-98 | ISS |
| GO:0009408 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to heat | SoyBase | N/A | ISS |
| GO:0009414 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to water deprivation | SoyBase | N/A | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0009809 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lignin biosynthetic process | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0005575 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cellular component | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0016621 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cinnamoyl-CoA reductase activity | SoyBase | N/A | ISS |
| GO:0050662 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: coenzyme binding | SoyBase | N/A | ISS |
| KOG1502 | KOG | Flavonol reductase/cinnamoyl-CoA reductase | JGI | ISS | |
| PTHR10366 | Panther | NAD DEPENDENT EPIMERASE/DEHYDRATASE | JGI | ISS | |
| PTHR10366:SF74 | Panther | gb def: putative epimerase dehydratase, red superfamily, possibly udp-glucose 4-epimera | JGI | ISS | |
| PF01073 | PFAM | 3-beta hydroxysteroid dehydrogenase/isomerase family | JGI | ISS | |
| UniRef100_G7IZT5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Dihydroflavonol-4-reductase n=1 Tax=Medicago truncatula RepID=G7IZT5_MEDTR | SoyBase | E_val: 5.00E-125 | ISS |
| UniRef100_UPI0002337FC7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002337FC7 related cluster n=1 Tax=unknown RepID=UPI0002337FC7 | SoyBase | E_val: 0 | ISS |
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Glyma08g23120 not represented in the dataset |
Glyma08g23120 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g02990 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g216200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g23120.1 sequence type=CDS gene model=Glyma08g23120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCCTCCCATAACCGCACTCTCTTCAAGGCAGATTTCTTGAATTACGAATCTCTTTGCTCAGCAATTTCTGGATGCACTGCAGTTTTCCATCTTGCTTGCCCTGTACCCTCAATTATTGTTCCCAACCCTCAGGTAGAAACGATTGAGCCTGCTGTGAAAGGAACCACTAATGTACTTGAAGCTAAAGTGCAACGACTTGTCTTTGTATCATCTATAGTTGCTATTTCCATTAACCCCAATTTACCTAAAGATAAAGTCATTGATGAGTCCTATTCGTCTGATAAAGATTACTGCAAAAGAACTCGGAACTGGTACTGTTTTTCCAAGACAGAGGCAGAGGAGCAGGCCCTTGACTTTGCCAAGAGAACTGGCCTTGATCTGGTAAGCATCTGCCCTTCCCTTGTGTTCTGGCCCATTTTACAGTCAACCACTGTTAATACCAGTAGCTTGGTTCTCCTCAAACTTTTAAAAGGTGTTGACTCATTGGAGAAGAAGATCCGTTGGATAGTGGATGTACGATATGTAGTTTATGCAATACTTTTGACTTATGAGAAGCTTGAGGCAAAAGGGAGATACGTATTCCATTCACATAACATCAAGACACGGGATATGCTGGAGAAACTGAAGAGTATATATCCCAGCTACAAATACCCTGCGAACTATACTGAGGTGGATGATTACATAAGTTTCAGCTCAGAGAAACTGCAAAGGTTGGGTTGGAAATACAGGTCACTGGAGGAAGCACTCATTGATTCTGTTGAGAGCTATCGGGAAGCTGGCCTCCTGCAATCAGAATAA
>Glyma08g23120.1 sequence type=predicted peptide gene model=Glyma08g23120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSHNRTLFKADFLNYESLCSAISGCTAVFHLACPVPSIIVPNPQVETIEPAVKGTTNVLEAKVQRLVFVSSIVAISINPNLPKDKVIDESYSSDKDYCKRTRNWYCFSKTEAEEQALDFAKRTGLDLVSICPSLVFWPILQSTTVNTSSLVLLKLLKGVDSLEKKIRWIVDVRYVVYAILLTYEKLEAKGRYVFHSHNIKTRDMLEKLKSIYPSYKYPANYTEVDDYISFSSEKLQRLGWKYRSLEEALIDSVESYREAGLLQSE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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