SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G12400 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25270.1); Has 177 Blast hits to 172 proteins in 23 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 0; Plants - 164; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr2:5005144-5008140 REVERSE LENGTH=541 | SoyBase | E_val: 5.00E-129 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_Q7XTN2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: OSJNBa0033G05.10 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XTN2_ORYSJ | SoyBase | E_val: 1.00E-107 | ISS |
| UniRef100_UPI0002337FBF | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002337FBF related cluster n=1 Tax=unknown RepID=UPI0002337FBF | SoyBase | E_val: 0 | ISS |
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Glyma08g22981 not represented in the dataset |
Glyma08g22981 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g215000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g22981.1 sequence type=CDS gene model=Glyma08g22981 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATCCGTCTCAATCTTAACCTCATTCCTTCTCTTCTTACAATTTTTGTTGTCGTTATTTCATGGAACTTGTTCTCTCCCTGCCATGCGGACAATTTCGGGTTCCCAGAAGGATTCTCAGCTAAGGGATCACAAAATAGTGCAAATAACTCAACAATATTAGCCGCACAAAGAACGCGGAGGATTGACCCTAGTACTGATTTCAATTACTATGAGGGTGGATGGGATATTACCAATACACATTATTATATGTCTGTTGCTTTTTCTGGTATTTCTCCGGTTGTCATTGGAGCCGTCTGGTGTTTCATTGTGGCATTATGCTTCACCATCATAGCTCTCGTACATTGCTTATGTTGCTGCTGCTGCCGCAAGAAAAAGCCTAGGACAGATTACTCTCGAAAGACTTATGCAATATCACTCATCTTTCTCTCAGTCTTCTTGATCATGACAATCATTGGAGGGGGTTTCCTTTACACTGGACTGGGGAAATTCCAAGCTACTGCACATGATGTATCAGATATTCTGGTCACAAGAGCAACTACAGTGGTTGATATTATTCAAAATGTAATAGACAATCTTCATGCGACTAAGGACATACAAGTAGCTAGTTTCTATCTTCCAGACGATATCAAGGGAGCCATTGAAAAGGCTGAAAAATTTTCCACTCAAACTGATTATATTAAGAACCAATCAGAGGAAACAGCAAGAATCTCAATGGAATTCCTGGGCGCTATAAGTGAAAGTCTTATCATTGTTGGTACTATGATGCTTATCTTGGCTGCGGTTGGCTTCGTAATCTCAATTTTGGGGTGGAAAGTGATCGTTTATATTTTACTTTTCTTTGGGTGGATCCTCGTCACATGCACTTTTATATTAAGCGGTATATCTTTAGTTGTTCACAATGGGGTAACTGACACATGTGTTGCAATGGAGGAATGGGTTCAGCACCCACGAGATAATACAGCTCTAAGCAAACTTCTTCCTTGCATGGATGAGAACACAGCCCAAAAAACCTTGGACATAACCAGAAACACCTCATTCCAAGTGGTCAATTTGCTTAATGCATTTATAATTAATATAGCCAACGCCAATATGCCTCCTATACAGGCTGATAAGGACATATACTACAATCAATCTGGTCCATCCATGCCCCTCTTGTGCAATCCGTTTCTTCCTGACTTGACCGAACGAGCATGTGGTCCAATGGAAGTAGACTTAAAGGGTGCATCTATTGCCTATCAAAGTTTTTTATGTAATACATCTCCAAATGGTCGATGCATTACCATGGGGAGATTGACTCCTTCTCTCTACACAAAGGTTATGGTGGCTACCAACATGAGTGACACACTACGTCGACATGGTCCACTGTTGGCTCGTTTAGTAGATTGTTCCTTTGTTGTAGACACCTTTGATCAAATCAATAAGGATGATTGTCAAAATTTCAAGCGATACAGCAATCAAATCTTCATTGGCTTGGTGTTGGTCTCAGCTGCAGTTATGTTTTCCGTCATTTTGTGGATAGTTTTTGTTAGAGAAAGACAAGTTCAAATATCTTCAAAGAAGTTTAAGAAAACACTAGTTGAAGCTCAATAA
>Glyma08g22981.1 sequence type=predicted peptide gene model=Glyma08g22981 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MIRLNLNLIPSLLTIFVVVISWNLFSPCHADNFGFPEGFSAKGSQNSANNSTILAAQRTRRIDPSTDFNYYEGGWDITNTHYYMSVAFSGISPVVIGAVWCFIVALCFTIIALVHCLCCCCCRKKKPRTDYSRKTYAISLIFLSVFLIMTIIGGGFLYTGLGKFQATAHDVSDILVTRATTVVDIIQNVIDNLHATKDIQVASFYLPDDIKGAIEKAEKFSTQTDYIKNQSEETARISMEFLGAISESLIIVGTMMLILAAVGFVISILGWKVIVYILLFFGWILVTCTFILSGISLVVHNGVTDTCVAMEEWVQHPRDNTALSKLLPCMDENTAQKTLDITRNTSFQVVNLLNAFIINIANANMPPIQADKDIYYNQSGPSMPLLCNPFLPDLTERACGPMEVDLKGASIAYQSFLCNTSPNGRCITMGRLTPSLYTKVMVATNMSDTLRRHGPLLARLVDCSFVVDTFDQINKDDCQNFKRYSNQIFIGLVLVSAAVMFSVILWIVFVRERQVQISSKKFKKTLVEAQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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