Report for Sequence Feature Glyma08g22830
Feature Type: gene_model
Chromosome: Gm08
Start: 17314838
stop: 17317330
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g22830
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G15930 AT
Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR) superfamily protein | chr3:5387444-5389690 FORWARD LENGTH=687
SoyBase E_val: 0 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PTHR24015 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24015:SF149 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF01535 PFAM
PPR repeat
JGI ISS
UniRef100_G7JGW9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7JGW9_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1KVG3 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KVG3_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g22830
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma08g22830
Paralog Evidence Comments
Glyma07g03270 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g22830 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g213800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g22830
Coding sequences of Glyma08g22830
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g22830.1 sequence type=CDS gene model=Glyma08g22830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAAGTTATGTTTGCCAATTCCTTTGTCTTTTTCGCTTGCAACCTTGACACTTTCACTTTCTTGGTTCCCTAAGAGAATGATTTCACACTGCTTTGGAGAATCTCCAATCTCTTTGCTTGAAAAGTGCAAGTCCATGTACCAGCTAAAGCAAATTCACTCCCACACCATCAAAATGGGTCTCTCTTCAGACCCTTTATTTCAAAAAAGAGTTATAGCCTTCTGTTGTGCCCATGAATCAGGGAAAATGATCTATGCCCGTCAGGTGTTTGACGCAATCCCGCAGCCAACCTTGTTCATTTGGAATACCATGATCAAGGGGTATTCTAGGATTAACCATCCTCAGAATGGAGTTTCCATGTATCTATTAATGCTGGCTAGTAACATCAAGCCTGACCGTTTTACATTTCCGTTCTTGTTGAAGGGATTTACCAGAAACATGGCTTTGCAGTATGGGAAAGTGTTACTTAATCATGCAGTGAAGCATGGATTTGATTCCAATTTGTTTGTGCAAAAGGCTTTCATACATATGTTTTCCTTGTGCAGGCTTGTGGATTTGGCTCGCAAGGTTTTTGATATGGGTGATGCATGGGAAGTAGTTACCTGGAATATAATGCTATCTGGCTATAACAGAGTTAAGCAATTTAAGAAATCAAAGATGCTTTTTATTGAAATGGAGAAGAGAGGGGTGTCACCCAATTCAGTTACTCTAGTTTTGATGCTTTCTGCATGCTCCAAATTGAAGGACTTAGAAGGGGGCAAGCACATTTATAAGTATATAAATGGAGGTATTGTTGAACGTAATCTCATATTGGAAAATGTTTTAATTGATATGTTTGCAGCCTGTGGAGAAATGGATGAAGCACAAAGTGTTTTTGACAATATGAAGAATCGAGATGTGATTTCTTGGACTTCCATTGTTACTGGGTTTGCCAATATTGGTCAAATTGATTTAGCTCGGAAGTATTTTGATCAAATCCCTGAGAGAGATTATGTTTCCTGGACTGCTATGATTGACGGCTACCTTAGAATGAACCGTTTCATAGAGGCTTTGGCACTTTTCCGTGAGATGCAAATGTCAAATGTGAAACCTGATGAGTTCACCATGGTTAGCATTCTTACAGCATGTGCACATCTGGGAGCACTTGAACTAGGGGAGTGGGTAAAGACTTACATTGACAAAAATAGTATTAAAAATGATACTTTTGTTGGGAATGCTCTAATAGACATGTACTTTAAATGTGGGAATGTCGGGAAAGCAAAAAAAGTATTCAAGGAAATGCATCACAAAGACAAATTTACCTGGACAGCAATGATAGTTGGCCTTGCCATCAATGGCCACGGTGAAGAAGCTCTAGCCATGTTTTCAAATATGATAGAAGCTTCAATTACACCAGATGAGATTACCTATATTGGTGTCCTGTGTGCATGCACACATGCAGGCATGGTAGAGAAAGGACAAAGTTTTTTCATTAGCATGACCATGCAGCATGGAATTAAGCCTAATGTGACACATTATGGATGCATGGTTGATCTACTTGGTCGTGCTGGGCGTTTAGAAGAAGCCCATGAAGTCATTGTGAATATGCCTGTAAAACCAAATTCAATTGTTTGGGGATCACTTCTTGGTGCTTGTAGAGTTCACAAAAATGTGCAACTAGCAGAAATGGCAGCTAAACAAATTCTTGAGTTAGAGCCTGAAAATGGGGCTGTTTATGTCTTGTTATGTAATATATATGCTGCCTGCAAGAGATGGGAAAACTTGCGTCAGGTCAGGAAACTGATGATGGAGAGGGGAATTAAGAAAACACCAGGTTGCAGTTTGATGGAACTGAATGGCAATGTTTATGAATTTGTTGCTGGGGACCAGTCACATCCTCAATCTAAAGAGATATATGCGAAGTTAGAAAACATGATGCAAGACTTGATAAAAGCAGGGTACTCACCTGATACATCAGAGGTTTTCCTTGATCTAGGGGAAGAGGATAAGGAGACTGCACTTTACCGGCACAGCGAGAAGTTGGCTATTGCTTATGCTCTTATTAGTTCAGGGCCTGGAATTACCATAAGAATAGTGAAGAACCTTAGAATGTGTGTGGATTGTCACCATATGGCAAAGCTTGTGTCAGAAGCTTACAATAGGGAACTAATAGTTAGGGATAAAACCAGATTCCATCATTTCAGGCATGGTTCATGTTCATGTAATAATTTCTGGTAA
Predicted protein sequences of Glyma08g22830
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g22830.1 sequence type=predicted peptide gene model=Glyma08g22830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MKLCLPIPLSFSLATLTLSLSWFPKRMISHCFGESPISLLEKCKSMYQLKQIHSHTIKMGLSSDPLFQKRVIAFCCAHESGKMIYARQVFDAIPQPTLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYGKVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDLLGRAGRLEEAHEVIVNMPVKPNSIVWGSLLGACRVHKNVQLAEMAAKQILELEPENGAVYVLLCNIYAACKRWENLRQVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQSHPQSKEIYAKLENMMQDLIKAGYSPDTSEVFLDLGEEDKETALYRHSEKLAIAYALISSGPGITIRIVKNLRMCVDCHHMAKLVSEAYNRELIVRDKTRFHHFRHGSCSCNNFW*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
