Glyma08g22630 - SoyBase

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Report for Sequence Feature Glyma08g22630

Feature Type:	gene_model
Chromosome:	Gm08
Start:	17182437
stop:	17184632
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g22630

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G52560	AT	Annotation by Michelle Graham. TAIR10: HSP20-like chaperones superfamily protein \| chr1:19574783-19575766 REVERSE LENGTH=232	SoyBase	E_val: 2.00E-81	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0009408	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to heat	SoyBase	N/A	ISS
GO:0009644	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to high light intensity	SoyBase	N/A	ISS
GO:0010286	GO-bp	Annotation by Michelle Graham. GO Biological Process: heat acclimation	SoyBase	N/A	ISS
GO:0042542	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG0710	KOG	Molecular chaperone (small heat-shock protein Hsp26/Hsp42)	JGI		ISS
PTHR11527	Panther	SMALL HEAT-SHOCK PROTEIN (HSP20) FAMILY	JGI		ISS
PTHR11527:SF16	Panther	SMALL HEAT-SHOCK PROTEIN	JGI		ISS
PF00011	PFAM	Hsp20/alpha crystallin family	JGI		ISS
UniRef100_G7JGZ4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 26.5 kDa heat shock protein n=1 Tax=Medicago truncatula RepID=G7JGZ4_MEDTR	SoyBase	E_val: 6.00E-82	ISS
UniRef100_UPI00018C7197	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00018C7197 related cluster n=1 Tax=unknown RepID=UPI00018C7197	SoyBase	E_val: 5.00E-166	ISS

Expression Patterns of Glyma08g22630

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g22630 not represented in the dataset	Glyma08g22630 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g22630

Paralog	Evidence	Comments
Glyma07g03450	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g22630 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g212000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g22630

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g22630

Limit To All Plant Sequences

>Glyma08g22630.2   sequence type=transcript   gene model=Glyma08g22630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTGGTTTTGAGGTACATTTTAATTAAATTGGATCAAAATCAGTCTGAATTTGGGGCAGGCCCATCATGCCAATATTTCAGGACCGGAAATTCTTCATGGCCAGATCGGGCTACGAATAAAAAAGAACTGAGACATTAAGATACTCACATTATAGTTCTTTCCTGTTCTGGAACACTCTTGTGAAATCATGTAATGTCTGAGAAGGAACAAGAACTCTCCATTCATCTCACTTTTCTCAAATTATTATTACATGTGCATCCATTTTGTGACGTGTCCTTAACATCCTAGAATCTCTAGGACACTTCTCCAAGCATCCAAAGCCAAATAAATAACCAACACCAATTACCCCATGTTATATATATATTTAAGTTGTCTTCAGTTCCTTTCAACCATCAGCAAAAACAAACAGACAAACTAAGGGAAACCATCAATAGTTCAACATCAAGCTCATCCATCATATGGCTTTGGCACGTTTGGCTTTGAAAAACTTGCAACAAAGGGTGTGTGCTTCCTCTTTCTTGAGTGGCAATGTTCACAAGCAGAGGTGGAACAATGAGTTGCTGAGAAGGTTTGGTACTGCAGCTGGGGACAAGGGAAAATCTGAAGGCACTGAAGTTGCTGTCACTGAAGGGAAAAAGTCTAATAGGATGTTCCCAAGGAGGAGGGGCAGAAGATGGGCTTGGAGAAATGAGGATCATGATGACTTCCCTCCTGCTCTTTATGAGTTGTTTCCTTCAGGGCTTGGGAGTGCACTGATGCAGGCAAGTAATAACATCAACAGGCTGTTTGAGAACATGAATCTGACACCTTGGTCTCTGACTAGTGGGCGTGTGAAAGAGAAGGATGACCATTACAAACTACGGTACGAGATGCCGGGGATCGCCAAAGAGGACGTGAAGATCACCATTGATGATGATGGGGTGTTGACAATAAAGGGAGAGCACAAGGAAGAGAAAGATGATGATGAGCAATATTGGTCATCAAGTAGCTATGGATACTATAACACAAGCCTGATTTTGCCTGATGATGCTAAAGCTGATGACATTAAGGCAGAGTTGAAGGATGGTGTCCTAACTCTAATCATTCCTAAGACTCAGAACCCCCAAAAGGATGTGAAACAAGTCACAATAGAATGATGTTGGAGATTTTTTTTATTTATTTATAGGACTATGGTGAGGCTATGAACTTTGTGACTCTTGTTGTGTGTGGTTTTTGGACATAATGTAAGAAAACAAATAAATAAAACTTCAGACCTGTTCTGTGAAAATTTTCAGTTGAAT

Coding sequences of Glyma08g22630

Limit To All Plant Sequences

>Glyma08g22630.1   sequence type=CDS   gene model=Glyma08g22630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTTGGCACGTTTGGCTTTGAAAAACTTGCAACAAAGGGTGTGTGCTTCCTCTTTCTTGAGTGGCAATGTTCACAAGCAGAGGTGGAACAATGAGTTGCTGAGAAGGTTTGGTACTGCAGCTGGGGACAAGGGAAAATCTGAAGGCACTGAAGTTGCTGTCACTGAAGGGAAAAAGTCTAATAGGATGTTCCCAAGGAGGAGGGGCAGAAGATGGGCTTGGAGAAATGAGGATCATGATGACTTCCCTCCTGCTCTTTATGAGTTGTTTCCTTCAGGGCTTGGGAGTGCACTGATGCAGGCAAGTAATAACATCAACAGGCTGTTTGAGAACATGAATCTGACACCTTGGTCTCTGACTAGTGGGCGTGTGAAAGAGAAGGATGACCATTACAAACTACGGTACGAGATGCCGGGGATCGCCAAAGAGGACGTGAAGATCACCATTGATGATGATGGGGTGTTGACAATAAAGGGAGAGCACAAGGAAGAGAAAGATGATGATGAGCAATATTGGTCATCAAGTAGCTATGGATACTATAACACAAGCCTGATTTTGCCTGATGATGCTAAAGCTGATGACATTAAGGCAGAGTTGAAGGATGGTGTCCTAACTCTAATCATTCCTAAGACTCAGAACCCCCAAAAGGATGTGAAACAAGTCACAATAGAATGA

>Glyma08g22630.2   sequence type=CDS   gene model=Glyma08g22630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTTGGCACGTTTGGCTTTGAAAAACTTGCAACAAAGGGTGTGTGCTTCCTCTTTCTTGAGTGGCAATGTTCACAAGCAGAGGTGGAACAATGAGTTGCTGAGAAGGTTTGGTACTGCAGCTGGGGACAAGGGAAAATCTGAAGGCACTGAAGTTGCTGTCACTGAAGGGAAAAAGTCTAATAGGATGTTCCCAAGGAGGAGGGGCAGAAGATGGGCTTGGAGAAATGAGGATCATGATGACTTCCCTCCTGCTCTTTATGAGTTGTTTCCTTCAGGGCTTGGGAGTGCACTGATGCAGGCAAGTAATAACATCAACAGGCTGTTTGAGAACATGAATCTGACACCTTGGTCTCTGACTAGTGGGCGTGTGAAAGAGAAGGATGACCATTACAAACTACGGTACGAGATGCCGGGGATCGCCAAAGAGGACGTGAAGATCACCATTGATGATGATGGGGTGTTGACAATAAAGGGAGAGCACAAGGAAGAGAAAGATGATGATGAGCAATATTGGTCATCAAGTAGCTATGGATACTATAACACAAGCCTGATTTTGCCTGATGATGCTAAAGCTGATGACATTAAGGCAGAGTTGAAGGATGGTGTCCTAACTCTAATCATTCCTAAGACTCAGAACCCCCAAAAGGATGTGAAACAAGTCACAATAGAATGA

Predicted protein sequences of Glyma08g22630

Limit To All Plant Sequences

>Glyma08g22630.1   sequence type=predicted peptide   gene model=Glyma08g22630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALARLALKNLQQRVCASSFLSGNVHKQRWNNELLRRFGTAAGDKGKSEGTEVAVTEGKKSNRMFPRRRGRRWAWRNEDHDDFPPALYELFPSGLGSALMQASNNINRLFENMNLTPWSLTSGRVKEKDDHYKLRYEMPGIAKEDVKITIDDDGVLTIKGEHKEEKDDDEQYWSSSSYGYYNTSLILPDDAKADDIKAELKDGVLTLIIPKTQNPQKDVKQVTIE*

>Glyma08g22630.2   sequence type=predicted peptide   gene model=Glyma08g22630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALARLALKNLQQRVCASSFLSGNVHKQRWNNELLRRFGTAAGDKGKSEGTEVAVTEGKKSNRMFPRRRGRRWAWRNEDHDDFPPALYELFPSGLGSALMQASNNINRLFENMNLTPWSLTSGRVKEKDDHYKLRYEMPGIAKEDVKITIDDDGVLTIKGEHKEEKDDDEQYWSSSSYGYYNTSLILPDDAKADDIKAELKDGVLTLIIPKTQNPQKDVKQVTIE*

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