Glyma08g22620 - SoyBase

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Report for Sequence Feature Glyma08g22620

Feature Type:	gene_model
Chromosome:	Gm08
Start:	17178753
stop:	17181646
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g22620

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G25360	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32342.1). \| chr5:8799934-8802333 REVERSE LENGTH=169	SoyBase	E_val: 2.00E-57	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1KH21	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KH21_SOYBN	SoyBase	E_val: 4.00E-115	ISS

Expression Patterns of Glyma08g22620

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g22620 not represented in the dataset	Glyma08g22620 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g22620

Paralog	Evidence	Comments
Glyma07g03460	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g22620 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g211900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g22620

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g22620

Limit To All Plant Sequences

>Glyma08g22620.2   sequence type=transcript   gene model=Glyma08g22620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAATCGTGAGAGAAGAGAAGAGGACGACGAAGAAGAAGAATCCAAAAGCAATCCCATCTGTGTGTTTGCACATCGGAAGGGAGGGCTATCAAACTCTAAGGATTGCTCTGAATCGGTTTCGTCTTCTTCGTTTTTCTTCAAAATCCTCGTGACAGATCTAATCTAATCAGCCTTTTGGGGGTGTTTCAGACATTGCATGCATATGGGTGGTTGTGTTGGATGCTATAAAAGGCCTTCACTGAGTCCCACAGTGGATGTGCCATCAAAAGGGTTGGCAACACAAAGTAACGTAGTGAGGAAACCGAGTTCATCAGAGGATTTTTGGACCACCAGCACGCATGATATGGACAACAGCGCTGTTCAGTCACAAGGGAGCATCTCTTCAGCCAGTCTAACAAACCAAGCTGTGGTTTCTCATGCTGGTTCTTCCAAAAGCAGCACCAACCCCACTGAATTTGTAAATCACGGTGTAATTCTTTGGAATCAGACTCGGCAACGTTGGGTTGGAAATAAAAAGCCTGAGAACCAAACACAACAATTACAAGAACCTAAATTGAGTTGGAATGCAACATATGAAAGTTTACTTGGGAGCAACAAGCCATTCCGTCAGCCTATCCCTCTTGCTGAAATGGTAGATTTTCTTGTGGATATATGGGAGCAAGATGGCCTATACGACTGAGATATTGAAGATTGAGGAAGTGCTGAAAATAATTCTAGTTCTTGCTTGTAGGAAGGACTATTGGGCATATACTGCAGTTTGTATATCAATTGTCGCATGCCTATGAATATGATGAGGAAAAATTTGTGTCTTGGGAACATGAGATAACTGTATTATCCTTTTGTTAATTGATTGCCTTGGCTGCCTCTACTATCTCAAGAGGCAAGTTTTGGAAAACTCTTGCCTTTGTTGACAGCCTTTTGCTTGCATGTATGAGTGGCTGCAACTTTTATTTGCTCTGCCTGCTTTTCCGTGAAATTAGACCGAAATTATGTTGTGTAAATAGTCAATAACTGAGATATAGTTTCTGATTTGGTTTCAATGTTTCATATCCATTAAGCTTTTAAAAATCCTGTCTTAGTGG

>Glyma08g22620.4   sequence type=transcript   gene model=Glyma08g22620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAATCGTGAGAGAAGAGAAGAGGACGACGAAGAAGAAGAATCCAAAAGCAATCCCATCTGTGTGTTTGCACATCGGAAGGGAGGGCTATCAAACTCTAAGGATTGCTCTGAATCGGTTTCGTCTTCTTCGTTTTTCTTCAAAATCCTCGTGACAGATCTAATCTAATCAGCCTTTTGGGGGTGTTTCAGACATTGCATGCATATGGGAGCAGTGGTTGTGTTGGATGCTATAAAAGGCCTTCACTGAGTCCCACAGTGGATGTGCCATCAAAAGGGTTGGCAACACAAAGTAACGTAGTGAGGAAACCGAGTTCATCAGAGGATTTTTGGACCACCAGCACGCATGATATGGACAACAGCGCTGTTCAGTCACAAGGGAGCATCTCTTCAGCCAGTCTAACAAACCAAGCTGTGGTTTCTCATGCTGGTTCTTCCAAAAGCAGCACCAACCCCACTGAATTTGTAAATCACGGTGTAATTCTTTGGAATCAGACTCGGCAACGTTGGGTTGGAAATAAAAAGCCTGAGAACCAAACACAACAATTACAAGAACCTAAATTGAGAACTTATTGTCTGTGCCTTGCCAAAAATTTTTGGCTTTGCAGTTGGAATGCAACATATGAAAGTTTACTTGGGAGCAACAAGCCATTCCGTCAGCCTATCCCTCTTGCTGAAATGGTAGATTTTCTTGTGGATATATGGGAGCAAGATGGCCTATACGACTGAGATATTGAAGATTGAGGAAGTGCTGAAAATAATTCTAGTTCTTGCTTGTAGGAAGGACTATTGGGCATATACTGCAGTTTGTATATCAATTGTCGCATGCCTATGAATATGATGAGGAAAAATTTGTGTCTTGGGAACATGAGATAACTGTATTATCCTTTTGTTAATTGATTGCCTTGGCTGCCTCTACTATCTCAAGAGGCAAGTTTTGGAAAACTCTTGCCTTTGTTGACAGCCTTTTGCTTGCATGTATGAGTGGCTGCAACTTTTATTTGCTCTGCCTGCTTTTCCGTGAAATTAGACCGAAATTATGTTGTGTAAATAGTCAATAACTGAGATATAGTTTCTGATTTGGTTTCAATGTTTCATATCCATTAAGCTTTTAAAAATCCTGTCTTAGTGG

>Glyma08g22620.8   sequence type=transcript   gene model=Glyma08g22620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATCGTGAGAGAAGAGAAGAGGACGACGAAGAAGAAGAATCCAAAAGCAATCCCATCTGTGTGTTTGCACATCGGAAGGGAGGGCTATCAAACTCTAAGTGGTTGTGTTGGATGCTATAAAAGGCCTTCACTGAGTCCCACAGTGGATGTGCCATCAAAAGGGTTGGCAACACAAAGTAACGTAGTGAGGAAACCGAGTTCATCAGAGGATTTTTGGACCACCAGCACGCATGATATGGACAACAGCGCTGTTCAGTCACAAGGGAGCATCTCTTCAGCCAGTCTAACAAACCAAGCTGTGGTTTCTCATGCTGGTTCTTCCAAAAGCAGCACCAACCCCACTGAATTTGTAAATCACGGTGTAATTCTTTGGAATCAGACTCGGCAACGTTGGGTTGGAAATAAAAAGCCTGAGAACCAAACACAACAATTACAAGAACCTAAATTGAGTTGGAATGCAACATATGAAAGTTTACTTGGGAGCAACAAGCCATTCCGTCAGCCTATCCCTCTTGCTGAAATGGTAGATTTTCTTGTGGATATATGGGAGCAAGATGGCCTATACGACTGAGATATTGAAGATTGAGGAAGTGCTGAAAATAATTCTAGTTCTTGCTTGTAGGAAGGACTATTGGGCATATACTGCAGTTTGTATATCAATTGTCGCATGCCTATGAATATGATGAGGAAAAATTTGTGTCTTGGGAACATGAGATAACTGTATTATCCTTTTGTTAATTGATTGCCTTGGCTGCCTCTACTATCTCAAGAGGCAAGTTTTGGAAAACTCTTGCCTTTGTTGACAGCCTTTTGCTTGCATGTATGAGTGGCTGCAACTTTTATTTGCTCTGCCTGCTTTTCCGTGAAATTAGACCGAAATTATGTTGTGTAAATAGTCAATAACTGAGATATAGTTTCTGATTTGGTTTCAATGTTTCATATCCATTAAGCTTTTAAAAATCCTGTCTTAGTGG

Coding sequences of Glyma08g22620

Limit To All Plant Sequences

>Glyma08g22620.1   sequence type=CDS   gene model=Glyma08g22620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATATGGGTGGTTGTGTTGGATGCTATAAAAGGCCTTCACTGAGTCCCACAGTGGATGTGCCATCAAAAGGGTTGGCAACACAAAGTAACGTAGTGAGGAAACCGAGTTCATCAGAGGATTTTTGGACCACCAGCACGCATGATATGGACAACAGCGCTGTTCAGTCACAAGGGAGCATCTCTTCAGCCAGTCTAACAAACCAAGCTGTGGTTTCTCATGCTGGTTCTTCCAAAAGCAGCACCAACCCCACTGAATTTGTAAATCACGGTGTAATTCTTTGGAATCAGACTCGGCAACGTTGGGTTGGAAATAAAAAGCCTGAGAACCAAACACAACAATTACAAGAACCTAAATTGAGAACTTATTGTCTGTGCCTTGCCAAAAATTTTTGGCTTTGCAGTTGGAATGCAACATATGAAAGTTTACTTGGGAGCAACAAGCCATTCCGTCAGCCTATCCCTCTTGCTGAAATGGTAGATTTTCTTGTGGATATATGGGAGCAAGATGGCCTATACGACTGA

>Glyma08g22620.2   sequence type=CDS   gene model=Glyma08g22620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATATGGGTGGTTGTGTTGGATGCTATAAAAGGCCTTCACTGAGTCCCACAGTGGATGTGCCATCAAAAGGGTTGGCAACACAAAGTAACGTAGTGAGGAAACCGAGTTCATCAGAGGATTTTTGGACCACCAGCACGCATGATATGGACAACAGCGCTGTTCAGTCACAAGGGAGCATCTCTTCAGCCAGTCTAACAAACCAAGCTGTGGTTTCTCATGCTGGTTCTTCCAAAAGCAGCACCAACCCCACTGAATTTGTAAATCACGGTGTAATTCTTTGGAATCAGACTCGGCAACGTTGGGTTGGAAATAAAAAGCCTGAGAACCAAACACAACAATTACAAGAACCTAAATTGAGTTGGAATGCAACATATGAAAGTTTACTTGGGAGCAACAAGCCATTCCGTCAGCCTATCCCTCTTGCTGAAATGGTAGATTTTCTTGTGGATATATGGGAGCAAGATGGCCTATACGACTGA

>Glyma08g22620.4   sequence type=CDS   gene model=Glyma08g22620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACAACAGCGCTGTTCAGTCACAAGGGAGCATCTCTTCAGCCAGTCTAACAAACCAAGCTGTGGTTTCTCATGCTGGTTCTTCCAAAAGCAGCACCAACCCCACTGAATTTGTAAATCACGGTGTAATTCTTTGGAATCAGACTCGGCAACGTTGGGTTGGAAATAAAAAGCCTGAGAACCAAACACAACAATTACAAGAACCTAAATTGAGAACTTATTGTCTGTGCCTTGCCAAAAATTTTTGGCTTTGCAGTTGGAATGCAACATATGAAAGTTTACTTGGGAGCAACAAGCCATTCCGTCAGCCTATCCCTCTTGCTGAAATGGTAGATTTTCTTGTGGATATATGGGAGCAAGATGGCCTATACGACTGA

>Glyma08g22620.8   sequence type=CDS   gene model=Glyma08g22620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATCGTGAGAGAAGAGAAGAGGACGACGAAGAAGAAGAATCCAAAAGCAATCCCATCTGTGTGTTTGCACATCGGAAGGGAGGGCTATCAAACTCTAAGTGGTTGTGTTGGATGCTATAAAAGGCCTTCACTGAGTCCCACAGTGGATGTGCCATCAAAAGGGTTGGCAACACAAAGTAACGTAGTGAGGAAACCGAGTTCATCAGAGGATTTTTGGACCACCAGCACGCATGATATGGACAACAGCGCTGTTCAGTCACAAGGGAGCATCTCTTCAGCCAGTCTAACAAACCAAGCTGTGGTTTCTCATGCTGGTTCTTCCAAAAGCAGCACCAACCCCACTGAATTTGTAAATCACGGTGTAATTCTTTGGAATCAGACTCGGCAACGTTGGGTTGGAAATAAAAAGCCTGAGAACCAAACACAACAATTACAAGAACCTAAATTGAGTTGGAATGCAACATATGAAAGTTTACTTGGGAGCAACAAGCCATTCCGTCAGCCTATCCCTCTTGCTGAAATGGTAGATTTTCTTGTGGATATATGGGAGCAAGATGGCCTATACGACTGA

Predicted protein sequences of Glyma08g22620

Limit To All Plant Sequences

>Glyma08g22620.1   sequence type=predicted peptide   gene model=Glyma08g22620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHMGGCVGCYKRPSLSPTVDVPSKGLATQSNVVRKPSSSEDFWTTSTHDMDNSAVQSQGSISSASLTNQAVVSHAGSSKSSTNPTEFVNHGVILWNQTRQRWVGNKKPENQTQQLQEPKLRTYCLCLAKNFWLCSWNATYESLLGSNKPFRQPIPLAEMVDFLVDIWEQDGLYD*

>Glyma08g22620.2   sequence type=predicted peptide   gene model=Glyma08g22620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHMGGCVGCYKRPSLSPTVDVPSKGLATQSNVVRKPSSSEDFWTTSTHDMDNSAVQSQGSISSASLTNQAVVSHAGSSKSSTNPTEFVNHGVILWNQTRQRWVGNKKPENQTQQLQEPKLSWNATYESLLGSNKPFRQPIPLAEMVDFLVDIWEQDGLYD*

>Glyma08g22620.4   sequence type=predicted peptide   gene model=Glyma08g22620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDNSAVQSQGSISSASLTNQAVVSHAGSSKSSTNPTEFVNHGVILWNQTRQRWVGNKKPENQTQQLQEPKLRTYCLCLAKNFWLCSWNATYESLLGSNKPFRQPIPLAEMVDFLVDIWEQDGLYD*

>Glyma08g22620.8   sequence type=predicted peptide   gene model=Glyma08g22620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
IVREEKRTTKKKNPKAIPSVCLHIGREGYQTLSGCVGCYKRPSLSPTVDVPSKGLATQSNVVRKPSSSEDFWTTSTHDMDNSAVQSQGSISSASLTNQAVVSHAGSSKSSTNPTEFVNHGVILWNQTRQRWVGNKKPENQTQQLQEPKLSWNATYESLLGSNKPFRQPIPLAEMVDFLVDIWEQDGLYD*

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