Glyma08g22600 - SoyBase

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Report for Sequence Feature Glyma08g22600

Feature Type:	gene_model
Chromosome:	Gm08
Start:	17163649
stop:	17168005
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g22600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G15730	AT	Annotation by Michelle Graham. TAIR10: phospholipase D alpha 1 \| chr3:5330835-5333474 FORWARD LENGTH=810	SoyBase	E_val: 0	ISS
GO:0006094	GO-bp	Annotation by Michelle Graham. GO Biological Process: gluconeogenesis	SoyBase	N/A	ISS
GO:0006096	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycolysis	SoyBase	N/A	ISS
GO:0006631	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid metabolic process	SoyBase	N/A	ISS
GO:0006833	GO-bp	Annotation by Michelle Graham. GO Biological Process: water transport	SoyBase	N/A	ISS
GO:0006972	GO-bp	Annotation by Michelle Graham. GO Biological Process: hyperosmotic response	SoyBase	N/A	ISS
GO:0007030	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi organization	SoyBase	N/A	ISS
GO:0009266	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0009789	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of abscisic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009845	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed germination	SoyBase	N/A	ISS
GO:0010119	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of stomatal movement	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0048767	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair elongation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0030136	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: clathrin-coated vesicle	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004630	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phospholipase D activity	SoyBase	N/A	ISS
GO:0005509	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium ion binding	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0005546	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphatidylinositol-4,5-bisphosphate binding	SoyBase	N/A	ISS
KOG1329	KOG	Phospholipase D1	JGI		ISS
PTHR18896	Panther	PHOSPHOLIPASE D	JGI		ISS
PTHR18896:SF11	Panther	PHOPHOLIPASE D ALPHA	JGI		ISS
PF00168	PFAM	C2 domain	JGI		ISS
PF00614	PFAM	Phospholipase D Active site motif	JGI		ISS
PF12357	PFAM	Phospholipase D C terminal	JGI		ISS
UniRef100_I1KVD8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Phospholipase D n=1 Tax=Glycine max RepID=I1KVD8_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1KVD8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Phospholipase D n=1 Tax=Glycine max RepID=I1KVD8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g22600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g22600

Paralog	Evidence	Comments
Glyma07g03490	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g22600 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g211700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g22600

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g22600

Limit To All Plant Sequences

>Glyma08g22600.1   sequence type=CDS   gene model=Glyma08g22600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGCAAATTCTGCTTCATGGGACTCTCCACGCCACCGTCTTCGAGGTTGATAGGCTCAATGCTGGTGGTGGTGGCGGCAATTTTTTCAGCAAGCTCAAGCAAAACTTTGAGGAGACTGTTGGCATCGGAAAGGGAGTTACTAAACTCTATGCAACCATTGATCTGGAGAAAGCAAGAGTAGGAAGGACTAGAATCATAGAAAATGAACATACTAATCCCAGATGGTATGAGTCTTTTCACATTTATTGTGCTCATATGGCTTCAAATATCATATTCACTGTGAAAGATGATAATCCTATTGGGGCAACTTTAATTGGAAGAGCTTATGTGCCTGTTTCGGAGGTCTTGGATGGTGAGGAAATAGATAGGTGGGTTGAAATCTTGGACGAGGAAAAAAACCCAATACAAGAGGGTTCAAAGATCCATGTGAAGCTGCAATATTTTGATGTCACAAAAGACCGCAACTGGGCTCGAGGCATTAGAAGTCCCAAATTCCCCGGCGTTCCCTATACTTTCTTCTCACAGAGGCAAGGATGTAAGGTATCTCTGTACCAAGATGCTCATGTACCTGATAATTTTGTACCTAAAATACCTCTTGCTGGAGGCAAGAATTATGAGGCTCATAGGTGTTGGGAGGATATATTTGATGCAATCACTAATGCTAGACACTTCATATACATTACTGGTTGGTCTGTTTATACTGAAATTTCCTTGGTGAGGGATTCTAGGAGGCCAAAGCCTGGGGGAGACCAAACACTTGGTGAGCTTCTCAAGAAAAAGGCAAATGAAGGGGTTAAGGTATTGATGCTTGTTTGGGATGATAGAACATCAGTTGGTTTGTTGAAAAAAGATGGACTAATGGCTACTCACGATGAAGAAACTGCACAGTTCTTTGAAGGCACTGAGGTGCATTGTGTTTTATGCCCCCGCAATCCTGATGATGGTGGTAGCATTGTTCAGGATTTACAAATTTCTACCATGTTTACTCATCACCAGAAGATCGTGGTGGTTGACGGTGCGATGCCAGGTGAAGGGTCAGATAGGCGAAGAATTGTGAGTTTTGTTGGGGGTATTGACCTCTGCGACGGAAGATATGACACTGCCTTCCACTCACTTTTCAGAACCCTAGACACAGCACACCATGACGATTTTCATCAGCCTAACTTTCCTGGTGCTGCTATCACAAAAGGTGGTCCCAGGGAACCATGGCACGACATCCACTCCCGGCTTGAAGGACCCATAGCTTGGGATGTTTTGTTCAACTTTGAGCAGAGATGGAGAAAGCAAGGTGGGAAGGATGTACTTGTTCCACTGAGAGAGCTTGAAGATGTCATTATTCCCCCATCCCCAGTAACGTTTCCTGAAGATCATGAGACCTGGAATGTTCAGTTGTTTAGATCCATTGATGGTGGGGCTGCTTTTGGGTTCCCGGAGACTCCTGAAGATGCTGCCAGAGCTGGTCTTATTAGTGGGAAGGATAATATCATTGATCGTAGCATTCAAGATGCTTATATTAATGCTATTCGACGTGCAAAGAACTTCATCTATATTGAAAATCAGTATTTCCTTGGAAGCTCTTTTGCCTGGAGTGCTGATGATATTAAGCCTGAAGACATTGGTGCTTTGCATCTAATCCCAAAGGAACTTTCACTCAAGATTGTTAGTAAGATTGAAGCTGGGGAAAGGTTTGCTGTGTATGTTGTAGTCCCAATGTGGCCAGAGGGTGTTCCAGAAAGTGCATCAGTTCAGGCAATATTGGACTGGCAGAAGAGAACAATGGAGATGATGTACAAGGACATTATTCAGGCACTCAGAGCTAAGGGAATCGATGAAGATCCTCGAAACTATTTGACATTCTTCTGCCTTGGCAACCGGGAAGTGAAGAAACCAGGAGAATATGAGCCTTCTGAGCAACCAGATCCTGATTCAGATTATCAGAGAGCCCAAGAGGCCCGACGATTCATGATTTATGTTCATACCAAGATGATGATAGTTGATGACGAATACATAATCGTTGGATCTGCCAATATCAACCAAAGGTCAATGGATGGTGCTAGGGACTCTGAGATTGCCATGGGTGCTTATCAGCCCTATCATTTGGCTACCAGGCAGCCAGCACGTGGTCAGATTCACGGTTTCCGCATGTCATTGTGGTATGAGCACCTTGGCATGCTTCATGACTCCTTCCTCCAGCCAGAAAGTGATGAATGCATTAACAAGGTGAACCAAGTTGCTGACAAATATTGGGATCTGTATTCTAACGAGTCACTTGAGCATGACCTTCCCGGTCACCTTCTCCGCTACCCCATCGGGGTTGCCAGTGAAGGAGATGTCACCGAGCTGCCAGGATTTGAATTCTTTCCCGACACCAAGGCTCGCATTCTTGGTGGCAAAGCTGACTACCTCCCCCCTATTCTCACTACTTAA

Predicted protein sequences of Glyma08g22600

Limit To All Plant Sequences

>Glyma08g22600.1   sequence type=predicted peptide   gene model=Glyma08g22600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAQILLHGTLHATVFEVDRLNAGGGGGNFFSKLKQNFEETVGIGKGVTKLYATIDLEKARVGRTRIIENEHTNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVSEVLDGEEIDRWVEILDEEKNPIQEGSKIHVKLQYFDVTKDRNWARGIRSPKFPGVPYTFFSQRQGCKVSLYQDAHVPDNFVPKIPLAGGKNYEAHRCWEDIFDAITNARHFIYITGWSVYTEISLVRDSRRPKPGGDQTLGELLKKKANEGVKVLMLVWDDRTSVGLLKKDGLMATHDEETAQFFEGTEVHCVLCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDGAMPGEGSDRRRIVSFVGGIDLCDGRYDTAFHSLFRTLDTAHHDDFHQPNFPGAAITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKDVLVPLRELEDVIIPPSPVTFPEDHETWNVQLFRSIDGGAAFGFPETPEDAARAGLISGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSSFAWSADDIKPEDIGALHLIPKELSLKIVSKIEAGERFAVYVVVPMWPEGVPESASVQAILDWQKRTMEMMYKDIIQALRAKGIDEDPRNYLTFFCLGNREVKKPGEYEPSEQPDPDSDYQRAQEARRFMIYVHTKMMIVDDEYIIVGSANINQRSMDGARDSEIAMGAYQPYHLATRQPARGQIHGFRMSLWYEHLGMLHDSFLQPESDECINKVNQVADKYWDLYSNESLEHDLPGHLLRYPIGVASEGDVTELPGFEFFPDTKARILGGKADYLPPILTT*

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