Glyma08g22520 - SoyBase

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Report for Sequence Feature Glyma08g22520

Feature Type:	gene_model
Chromosome:	Gm08
Start:	17097747
stop:	17100941
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g22520

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G15390	AT	Annotation by Michelle Graham. TAIR10: peptide deformylase 1A \| chr1:5294653-5295625 FORWARD LENGTH=269	SoyBase	E_val: 3.00E-111	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0043686	GO-bp	Annotation by Michelle Graham. GO Biological Process: co-translational protein modification	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0005506	GO-mf	Annotation by Michelle Graham. GO Molecular Function: iron ion binding	SoyBase	N/A	ISS
GO:0042586	GO-mf	Annotation by Michelle Graham. GO Molecular Function: peptide deformylase activity	SoyBase	N/A	ISS
KOG3137	KOG	Peptide deformylase	JGI		ISS
PTHR10458	Panther	POLYPEPTIDE DEFORMYLASE	JGI		ISS
PF01327	PFAM	Polypeptide deformylase	JGI		ISS
UniRef100_E6NUC7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Peptide deformylase n=1 Tax=Jatropha curcas RepID=E6NUC7_9ROSI	SoyBase	E_val: 1.00E-124	ISS
UniRef100_I1KVC5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KVC5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g22520

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g22520 not represented in the dataset	Glyma08g22520 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g22520

Paralog	Evidence	Comments
Glyma07g03570	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g22520 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g210900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g22520

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g22520

Limit To All Plant Sequences

>Glyma08g22520.3   sequence type=transcript   gene model=Glyma08g22520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTGGATTTTAGAAAAAAAAATTCACCACCCACGTGGGTAGTACGAATAGTAGCTCCTAATCCATAAACAGTCCCTCCAGTCCTGTCGTGGTGCGGTGGTTTGTGGTGAAAATTTGCATAATAATCTTTTGCAGAAAGCAAGCAAGAAAGAAAAAGGGCCATGGAGGCCCTGCACTTGCACCGCGTGCTTCTCATGCCTGTTTCCCAAAAAACCTCAATCTTTTTGCGCGCCAGTGGCACCCCATTATCCACACTTGCAAGGCCACCATTGCGTTGGAGCTCTCAAACTTGCAGTGCCAGAGCAGGGTGGTTTTTGGGTCTTGGAGCAGACAGCAAGAAGACCAATTTACCTGATACCGTCAAAGCCGGTGACCCCGTTCTGCACGAGCCAGCCCAGGATGTTGATCCTAACGAAATAAAGTCGGAGAGAGTGCAGAAGATTATTGATGACATGATCCAGGTCATGAGAAAGGCTCCTGGTGTTGGTCTTGCTGCTCCCCAGATTGGAATTCCTTTGAGGATAATTGTTTTGGAAGATACAAAAGAGTACATTAGTTATGTCTCAAAGGAAGAGGCTAAAACTCAAGATAGAAGACCTTTTGATCTTTTGGTGATCCTGAATCCCAAGCTAGAGAAGAAGGGCAAGAGGACTGCTCTGTTTTTTGAAGGGTGCTTGAGTGTTGATGGGTTCAGAGCAGTGGTGGAGCGACACCTTGACGTTGAAGTTACAGGTTTGGATCGTTATGGTGCACCAATCAAAATAATCGCTTCTGGCTGGCAGGCTCGGATTTTACAACACGAGTGTGATCACTTGGATGGAACTCTGTATGTTGATAAGATGCTACCTAGAACTTTCAGAACTGTGGACAACATGGACCTGCCTCTTGCCCAGGGGTGCCCCAAACTTGGTCCTCGCTAAAATTACACTCCAGCTGTTTCTGATAAGGCATTCAATGCAGCTTATACTCGAAAAAAAAAATCAGAGTTGTGGACTATGGAGTCTGGATATTGACAGTGCCTAGCTTTTCTGCCCATTGACAAAAAATTGGGTTTGCTGTCTTCTTGTTATTTGGAGCATTGAGGTGGCTACTTAGGCATTAGAAATTCATGTAACTTTTGTCAGCTCTAATGCAAACTTATACCAATTGTGTGCAGATCTTGGCTATTTCATCCTTCAATGATGAGGGAGAATTGTCGTTCTAATAAATCAGAATGATATGAAAGTTCATGTTCTAAATACTACCAATACCCTTACGTGATAATTATAGAGAATGAATGAAAATAGGGTTTTCTTATTAAGAATAAATGTTACAGGCCTATTTTGAATTTTCTTAATTTTAGATATTATCGTGACAATGCTTTATGTTTTTAGGCATATATATAGTATTTTTTTTTAGAAGAG

Coding sequences of Glyma08g22520

Limit To All Plant Sequences

>Glyma08g22520.1   sequence type=CDS   gene model=Glyma08g22520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGCCCTGCACTTGCACCGCGTGCTTCTCATGCCTGTTTCCCAAAAAACCTCAATCTTTTTGCGCGCCAGTGGCACCCCATTATCCACACTTGCAAGGCCACCATTGCGTTGGAGCTCTCAAACTTGCAGTGCCAGAGCAGGGTGGTTTTTGGGTCTTGGAGCAGACAGCAAGAAGACCAATTTACCTGATACCGTCAAAGCCGGTGACCCCGTTCTGCACGAGCCAGCCCAGGATGTTGATCCTAACGAAATAAAGTCGGAGAGAGTGCAGAAGATTATTGATGACATGATCCAGGTCATGAGAAAGGCTCCTGGTGTTGGTCTTGCTGCTCCCCAGATTGGAATTCCTTTGAGGATAATTGTTTTGGAAGATACAAAAGAGTACATTAGTTATGTCTCAAAGGAAGAGGCTAAAACTCAAGATAGAAGACCTTTTGATCTTTTGGTGATCCTGAATCCCAAGCTAGAGAAGAAGGGCAAGAGGACTGCTCTGTTTTTTGAAGGGTGCTTGAGTGTTGATGGGTTCAGAGCAGTGGTGGAGCGACACCTTGACGTTGAAGTTACAGGTTTGGATCGTTATGGTGCACCAATCAAAATAATCGCTTCTGGCTGGCAGGCTCGGATTTTACAACACGAGTGTGATCACTTGGATGGAACTCTGTATGTTGATAAGATGCTACCTAGAACTTTCAGAACTGTGGACAACATGGACCTGCCTCTTGCCCAGGGGTGCCCCAAACTTGGTCCTCGCTAA

>Glyma08g22520.3   sequence type=CDS   gene model=Glyma08g22520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGCCCTGCACTTGCACCGCGTGCTTCTCATGCCTGTTTCCCAAAAAACCTCAATCTTTTTGCGCGCCAGTGGCACCCCATTATCCACACTTGCAAGGCCACCATTGCGTTGGAGCTCTCAAACTTGCAGTGCCAGAGCAGGGTGGTTTTTGGGTCTTGGAGCAGACAGCAAGAAGACCAATTTACCTGATACCGTCAAAGCCGGTGACCCCGTTCTGCACGAGCCAGCCCAGGATGTTGATCCTAACGAAATAAAGTCGGAGAGAGTGCAGAAGATTATTGATGACATGATCCAGGTCATGAGAAAGGCTCCTGGTGTTGGTCTTGCTGCTCCCCAGATTGGAATTCCTTTGAGGATAATTGTTTTGGAAGATACAAAAGAGTACATTAGTTATGTCTCAAAGGAAGAGGCTAAAACTCAAGATAGAAGACCTTTTGATCTTTTGGTGATCCTGAATCCCAAGCTAGAGAAGAAGGGCAAGAGGACTGCTCTGTTTTTTGAAGGGTGCTTGAGTGTTGATGGGTTCAGAGCAGTGGTGGAGCGACACCTTGACGTTGAAGTTACAGGTTTGGATCGTTATGGTGCACCAATCAAAATAATCGCTTCTGGCTGGCAGGCTCGGATTTTACAACACGAGTGTGATCACTTGGATGGAACTCTGTATGTTGATAAGATGCTACCTAGAACTTTCAGAACTGTGGACAACATGGACCTGCCTCTTGCCCAGGGGTGCCCCAAACTTGGTCCTCGCTAA

Predicted protein sequences of Glyma08g22520

Limit To All Plant Sequences

>Glyma08g22520.1   sequence type=predicted peptide   gene model=Glyma08g22520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEALHLHRVLLMPVSQKTSIFLRASGTPLSTLARPPLRWSSQTCSARAGWFLGLGADSKKTNLPDTVKAGDPVLHEPAQDVDPNEIKSERVQKIIDDMIQVMRKAPGVGLAAPQIGIPLRIIVLEDTKEYISYVSKEEAKTQDRRPFDLLVILNPKLEKKGKRTALFFEGCLSVDGFRAVVERHLDVEVTGLDRYGAPIKIIASGWQARILQHECDHLDGTLYVDKMLPRTFRTVDNMDLPLAQGCPKLGPR*

>Glyma08g22520.3   sequence type=predicted peptide   gene model=Glyma08g22520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEALHLHRVLLMPVSQKTSIFLRASGTPLSTLARPPLRWSSQTCSARAGWFLGLGADSKKTNLPDTVKAGDPVLHEPAQDVDPNEIKSERVQKIIDDMIQVMRKAPGVGLAAPQIGIPLRIIVLEDTKEYISYVSKEEAKTQDRRPFDLLVILNPKLEKKGKRTALFFEGCLSVDGFRAVVERHLDVEVTGLDRYGAPIKIIASGWQARILQHECDHLDGTLYVDKMLPRTFRTVDNMDLPLAQGCPKLGPR*

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