SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G52700 | AT | Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein | chr1:19631186-19633366 REVERSE LENGTH=255 | SoyBase | E_val: 1.00E-141 | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0016787 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity | SoyBase | N/A | ISS |
| KOG2112 | KOG | Lysophospholipase | JGI | ISS | |
| PTHR10655 | Panther | LYSOPHOSPHOLIPASE-RELATED | JGI | ISS | |
| PTHR10655:SF5 | Panther | CARBOXYLESTERASE | JGI | ISS | |
| PF02230 | PFAM | Phospholipase/Carboxylesterase | JGI | ISS | |
| UniRef100_G7IMH6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Acyl-protein thioesterase n=1 Tax=Medicago truncatula RepID=G7IMH6_MEDTR | SoyBase | E_val: 2.00E-155 | ISS |
| UniRef100_I1KVB6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KVB6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g22420 not represented in the dataset |
Glyma08g22420 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g03670 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g209800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g22420.2 sequence type=transcript gene model=Glyma08g22420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CAGCAATCTGCTACTAATAATTTATAAATGAGATTTTTGTAAACAATGGCCTTGTTTTGTTCCATTGTGCTTCTTGTTTCTTAATGTTCCTTCTTTTGGCTTAATGCTCAATGCATATACATAAACAAAGAATGCATGAAGATTCTAGGATGTTTATTTTTTTTTCATCTAATGTGTTTTAGTGTGTTCAAGAGCTTATCTCATTTGTTTTTATTTTACCAAAGTACTCAACAAGAGAAGCAATAGCCTTTGGACTTATGCAGCAGTTTCTCATGACTATAAACAAACAAAACTTTTCTTCAAGTGGGGTTTGAGCAACTAGGTGTAGTGGCAAACAAGAAAGCAAGAGAGAGGCAAATGTAGTAAAAGGCTTACATGCTTTTTCTTGTCACTTCTAATTTGAGATCCAGGTTACTCACAGCTTAAATGTTAATATGAGTTAAGAGATAGAAAGTAGGGGAAAATACCTAGAAGCTGCGGTTCCCTCTCCAATAGCAATTCTCAGTCATTTTTATTACTCAAATTTCTTTCTCTCTGATAATTTGAGGACACAAAAAGTGAAGGAAAAGAGAAAAAATACTTTAGTTTGAGGTTAATGGGTATCCATCAATCAATCGAGCAGGGGGAATTGATAAACAAATATGATCTTTACAAGCACAATGGTTATTCTTTCTTGTTTTCAGTAATATTCTTCAGCTGCTGTTGCTGTTATCTTTATTTTCTGGCCACAGCCCACAAGCATAGATTCCTCTGTCCTTGCTGTGTGCCTTAGAAATGGATGAATTTGCTTTTACACTGCTTGGATTCTTTTTGCCCATAAAAGGTTTTCTGCTTTTGTCTGTCTATACCTTCTCCTTTTCATTGATGCTTTCTTAGGCGGTTCTAGGCACACTCTATTGCTGGTGTGGTGTGAACACTACACGTACACAGGGATGATGCACACATACACATTTTATTCCAACTCCACCTCACCCTTCTGGGTATAAAGAGGCATCACCATTCTGCATTTTCTTCATTGCATAACCTCTTCATAGTCCCTTGACACACTTCAATACTAGAAAGTATTGTGAATTGTTTGTAACAGCAAAATGAGCTATCCACATTATCATATGGGCTCTGGTTAGTTCTTTTGCTCTTCTTGATTGTTCTTTATCCTTACACCTTGCATGTCGCTTGCATTAACTTTTTCATTTCTATAAAATGCATGACTTTGGAAAGTCTTTTTTATAATTCATGCATCTGGTTTTTTGGTTCTAGCTTCTTCTATCGTTTAACTGTTATCAATGATAGTTTCCTTGGTCCATTTGGAAGGTAGTAGAACTGCTAGGAGAAGCTTGGAGTTTGGGAAGACACATGTGGTGAGGCCAAAAGGAAAACACCAAGCTACTATAGTTTGGCTGCATGGTCTTGGTGACAATGGTTTGAGCTCTTATCAGCTGCTGGAATCTCTTCCACTTCCAAATATAAAATGGATTTGCCCAACTGCTCCTACCCGTCCTGTAACCATACTTGGTGGTTTTTCTTGCACTGCATGGTTTGATATGGGAGAACTTTCAGAAGATGGTCCAGATGATTGGGAGGGTTTAGATGCCTCAGCATCACATATTGCCAACTTGTTGTCAACAGAGCCAGCTGATGTGAAAGTAGGAATTGGAGGCTTCAGTATGGGTGCTGCAGTAGCTCAATACTCTGCAACTTGTTTTGCCATGGGAAGGTATGGAAATGGCATCCCTTACCCTGTCAACCTAAGAGCAGTTGTTGGACTCAGTGGCTGGCTTCCAGGATCAAGGAGCTTAAGGAACAAAATTGAAGTGTCACATGAAGCAAGAAGGCGAGCTGCTTCGTTACCTGTTTTGCTGAGCCATGGAATCAGTGATGATGTAGTCCTCTACAAATACGGAGAGAAATCAGCTCAATCCTTAAGTTCAGCAGGGTTTCGATACATTACATTCAAATCCTATGATGGGCTTGGTCATTATACCGTTCCTAGGGAGATGGATGAGGTCTCTAATTGGCTTAGCTCAAGGCTGGGGCTTGGGGGATCCACATGAATAGCATAGTATAAGTCAGGGCATGCTTGTAAAATAACGAGTGGCTTCATCACAAAATGGTTTATCTGGCAATATATGGTATAAAAAGATTAGTGCATGTTTGGTGTGCAGTTGAAATTGTTGTCACACATGTTCCAAAACAATTCAATAGATAAAAGTAAAATGAAAGAAAAAGTATGGGTCATGATCCTTTTCCACCTGGTTTCCAAACGTGCACTTAGTCTTATGAGTTCCTTTAGTCATGATGCTGAGAAATAAAGATCTTAGATTTGAATGTGTTTTCAAGTAGTTCTCCCCCTTTATATTATCATAGTACCTAGAGACAGAGTCAGCAGTACTGTTGGAAAAATTTTGTTTTACTGTATTGTAACAATATAGGGTGCTTAGCTGTGTTGTTTATCAATTTCGGAGTGTTTTGTTCCTTATCTTTTCTTTCTTTCTTTTTTGTTTCGGTATCAATGCTTGCATGGAAATTTGGAGCTATGAAATCTTGCAAACTATTT
>Glyma08g22420.1 sequence type=CDS gene model=Glyma08g22420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGCTATCCACATTATCATATGGGCTCTGGTAGTAGAACTGCTAGGAGAAGCTTGGAGTTTGGGAAGACACATGTGGTGAGGCCAAAAGGAAAACACCAAGCTACTATAGTTTGGCTGCATGGTCTTGGTGACAATGGTTTGAGCTCTTATCAGCTGCTGGAATCTCTTCCACTTCCAAATATAAAATGGATTTGCCCAACTGCTCCTACCCGTCCTGTAACCATACTTGGTGGTTTTTCTTGCACTGCATGGTTTGATATGGGAGAACTTTCAGAAGATGGTCCAGATGATTGGGAGGGTTTAGATGCCTCAGCATCACATATTGCCAACTTGTTGTCAACAGAGCCAGCTGATGTGAAAGTAGGAATTGGAGGCTTCAGTATGGGTGCTGCAGTAGCTCAATACTCTGCAACTTGTTTTGCCATGGGAAGGTATGGAAATGGCATCCCTTACCCTGTCAACCTAAGAGCAGTTGTTGGACTCAGTGGCTGGCTTCCAGGATCAAGGAGCTTAAGGAACAAAATTGAAGTGTCACATGAAGCAAGAAGGCGAGCTGCTTCGTTACCTGTTTTGCTGAGCCATGGAATCAGTGATGATGTAGTCCTCTACAAATACGGAGAGAAATCAGCTCAATCCTTAAGTTCAGCAGGGTTTCGATACATTACATTCAAATCCTATGATGGGCTTGGTCATTATACCGTTCCTAGGGAGATGGATGAGGTCTCTAATTGGCTTAGCTCAAGGCTGGGGCTTGGGGGATCCACATGA >Glyma08g22420.2 sequence type=CDS gene model=Glyma08g22420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATAGTTTCCTTGGTCCATTTGGAAGGTAGTAGAACTGCTAGGAGAAGCTTGGAGTTTGGGAAGACACATGTGGTGAGGCCAAAAGGAAAACACCAAGCTACTATAGTTTGGCTGCATGGTCTTGGTGACAATGGTTTGAGCTCTTATCAGCTGCTGGAATCTCTTCCACTTCCAAATATAAAATGGATTTGCCCAACTGCTCCTACCCGTCCTGTAACCATACTTGGTGGTTTTTCTTGCACTGCATGGTTTGATATGGGAGAACTTTCAGAAGATGGTCCAGATGATTGGGAGGGTTTAGATGCCTCAGCATCACATATTGCCAACTTGTTGTCAACAGAGCCAGCTGATGTGAAAGTAGGAATTGGAGGCTTCAGTATGGGTGCTGCAGTAGCTCAATACTCTGCAACTTGTTTTGCCATGGGAAGGTATGGAAATGGCATCCCTTACCCTGTCAACCTAAGAGCAGTTGTTGGACTCAGTGGCTGGCTTCCAGGATCAAGGAGCTTAAGGAACAAAATTGAAGTGTCACATGAAGCAAGAAGGCGAGCTGCTTCGTTACCTGTTTTGCTGAGCCATGGAATCAGTGATGATGTAGTCCTCTACAAATACGGAGAGAAATCAGCTCAATCCTTAAGTTCAGCAGGGTTTCGATACATTACATTCAAATCCTATGATGGGCTTGGTCATTATACCGTTCCTAGGGAGATGGATGAGGTCTCTAATTGGCTTAGCTCAAGGCTGGGGCTTGGGGGATCCACATGA
>Glyma08g22420.1 sequence type=predicted peptide gene model=Glyma08g22420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSYPHYHMGSGSRTARRSLEFGKTHVVRPKGKHQATIVWLHGLGDNGLSSYQLLESLPLPNIKWICPTAPTRPVTILGGFSCTAWFDMGELSEDGPDDWEGLDASASHIANLLSTEPADVKVGIGGFSMGAAVAQYSATCFAMGRYGNGIPYPVNLRAVVGLSGWLPGSRSLRNKIEVSHEARRRAASLPVLLSHGISDDVVLYKYGEKSAQSLSSAGFRYITFKSYDGLGHYTVPREMDEVSNWLSSRLGLGGST* >Glyma08g22420.2 sequence type=predicted peptide gene model=Glyma08g22420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MIVSLVHLEGSRTARRSLEFGKTHVVRPKGKHQATIVWLHGLGDNGLSSYQLLESLPLPNIKWICPTAPTRPVTILGGFSCTAWFDMGELSEDGPDDWEGLDASASHIANLLSTEPADVKVGIGGFSMGAAVAQYSATCFAMGRYGNGIPYPVNLRAVVGLSGWLPGSRSLRNKIEVSHEARRRAASLPVLLSHGISDDVVLYKYGEKSAQSLSSAGFRYITFKSYDGLGHYTVPREMDEVSNWLSSRLGLGGST*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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