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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G15620 | AT | Annotation by Michelle Graham. TAIR10: DNA photolyase family protein | chr3:5293475-5296548 REVERSE LENGTH=556 | SoyBase | E_val: 0 | ISS |
| GO:0006281 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA repair | SoyBase | N/A | ISS |
| GO:0006290 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pyrimidine dimer repair | SoyBase | N/A | ISS |
| GO:0009411 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to UV | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003913 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA photolyase activity | SoyBase | N/A | ISS |
| GO:0003914 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA (6-4) photolyase activity | SoyBase | N/A | ISS |
| KOG0133 | KOG | Deoxyribodipyrimidine photolyase/cryptochrome | JGI | ISS | |
| PTHR11455 | Panther | DNA PHOTOLYASE | JGI | ISS | |
| PF00875 | PFAM | DNA photolyase | JGI | ISS | |
| PF03441 | PFAM | FAD binding domain of DNA photolyase | JGI | ISS | |
| UniRef100_B9RV05 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA photolyase, putative n=1 Tax=Ricinus communis RepID=B9RV05_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002338E10 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002338E10 related cluster n=1 Tax=unknown RepID=UPI0002338E10 | SoyBase | E_val: 0 | ISS |
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Glyma08g22400 not represented in the dataset |
Glyma08g22400 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g209600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g22400.2 sequence type=transcript gene model=Glyma08g22400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTTCCCTCCGTCTAAACAAGTTCTAAGCTACGCCGTGGGCGTAAACCAAACTCCGAATCACGTTAGTGGCACTAAGTAAACCCCCAGGGCGCACGTTAGAGAGAACCACCTCGTAGGAAATATGTTAGTTGATGTTAAGGAAAGGCGCGAATCCCATGATTTTGTTCAAACCTTCATCAGCTATGCGATTGTCTCCTTGTGCGAACACCACTTCAATGAGTTCCGGATCGGGTTCACTTTTGTGGTTCCGGAAGGGTCTTCGGATCCATGACAACCCCGCTCTCGAAGTCGCTTCGCGTGGAGCCTCTCATCTCTACCCTGTCTTTGTCATCGACCCGCATTTCATGGAACCCGACCCGAATTCTTCCGCACCCGGATCCTCTCGCGCGGGTCTGAACCGCATCAAGTTCTTGCTGGAGTGCCTCGTTGACCTTGACCTCAACCTCAAGAACCTTGGCTCAAGACTTTTGATTCTCAAGGGTGACCCTGCTGAAGTTGTCATTCGATGCTTGAAGGAGTTGCATGTTAAAAAGCTATGCTTTGAGTACGACACTGAACCGTATTATCAGGCTCTGGATGTTAAAGTTAAGAACTTTGCACTTGCTGCTGGAATTGAGGTTTTCTCTCCTGTAAGTCATACACTCTTCAATCCCACGGATATCATAGAGAAGAATGGAGGGAAGCCGCCGCTTAGTTATCAATCGTTTGTCAAGCTTGCTGGGGAACCACCATCTTCTCTCTCTACTGTGTACTCTTCACTTCCTCCAGTTGGCAATCTTGGAAGTTGTGATATTTCTGAAGTTCCAACAATCAGAGATCTTGGATATGGAGATGCTGAACAGGATGAGTTCTCTCCTTTCAAAGGTGGTGAGTCTGAAGCATTGAAGAGGTTAGATGAATGCATGAAAGACAAGAAGTGGGTGGCAAACTTTGAGAAACCCAAGGGTAATCCATCTGCATTTCTTAAGCCAGCAACAACTGTTTTATCACCTTATCTGAAATTTGGTTGTCTCTCCCCCAGATATTTCTACCAGAGTATTCAAGATGTATATAAAAGTATGCCGAAGCATACATTACCTCCCGTTTCTCTTATAGGACAGTTGTTGTGGCGAGAATTCTTTTACACGGCTGCTTTTGGGACTCCAAATTTTGATAGGATGAAAGGCAATAGGATATGCAAGCAGATTCCTTGGAAGGATGATGATAAACTGCTGGAGGCTTGGAGGGAGGCTAGGACAGGATTTCCTTGGATTGATGCTATCATGGTTCAGCTACGCAAATGGGGTTGGATGCATCATCTGGCACGGCATTCTGTTGCATGTTTTCTAACTCGAGGCGATCTGTTTGTTCATTGGGAAAAAGGACGAGATGTCTTCGAGAGGCTTCTGATTGATTCAGATTGGGCAATTAATAATGGAAACTGGATGTGGCTTTCTTGTTCATCTTTCTTTTATCAGTATAATCGTATTTATTCTCCAACTACATTTGGTAAGAAGTATGACCCTAATGGCGACTATATTAGGCATTTTCTCCCAGTCTTAAAAGATATGCCCAGGGAGTACATTTATGAACCCTGGACGGCTCCTAAAAGCATTCAGACCAAAGCAAATTGCATAATTGGCAAAGACTACCCAATGCCAGTGGTTTCTCATGATTCTGCGAGTAAAGAGTGCAGAAGGAAAATGGGCGAGGCATATGCATTGAATAAAGAATTAAATGGTTTGGTTAGTGAAGATGATCTGAAAAATTTGAGGAGGAAATTAGATGAGAGTGAAGGGCAAGAGGCTGGAGCTAAAAGATATAAGCAACAGCTGATTGGCTGACCCAAAATTTTACTCGTTTTTTCAACTGCCGTGCTTTGAGTTGCAGTTTATACGTGTTAGGGATATTTTATTTTATGCATTATCAAGACATTTGTATGACACATGTATGTATGTAACATATTTCGTAGACATAGACGCCAAATTGGAAGCAGTATGGCACATTATATTTTGCATATATACTAAATTATTTAGTTCATGTAACCCAACATGGCTTTAGTGAAACTTACATCAAAAGACATCGAAAAAATGTGTCCTTGAGGTCATTATAATAATGTCCGCGACATTATTCTTACAAATATATAATGTCACTCTGT
>Glyma08g22400.1 sequence type=CDS gene model=Glyma08g22400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTAAGGAAAGGCGCGAATCCCATGATTTTGTTCAAACCTTCATCAGCTATGCGATTGTCTCCTTGTGCGAACACCACTTCAATGAGTTCCGGATCGGGTTCACTTTTGTGGTTCCGGAAGGGTCTTCGGATCCATGACAACCCCGCTCTCGAAGTCGCTTCGCGTGGAGCCTCTCATCTCTACCCTGTCTTTGTCATCGACCCGCATTTCATGGAACCCGACCCGAATTCTTCCGCACCCGGATCCTCTCGCGCGGGTCTGAACCGCATCAAGTTCTTGCTGGAGTGCCTCGTTGACCTTGACCTCAACCTCAAGAACCTTGGCTCAAGACTTTTGATTCTCAAGGGTGACCCTGCTGAAGTTGTCATTCGATGCTTGAAGGAGTTGCATGTTAAAAAGCTATGCTTTGAGTACGACACTGAACCGTATTATCAGGCTCTGGATGTTAAAGTTAAGAACTTTGCACTTGCTGCTGGAATTGAGGTTTTCTCTCCTGTAAGTCATACACTCTTCAATCCCACGGATATCATAGAGAAGAATGGAGGGAAGCCGCCGCTTAGTTATCAATCGTTTGTCAAGCTTGCTGGGGAACCACCATCTTCTCTCTCTACTGTGTACTCTTCACTTCCTCCAGTTGGCAATCTTGGAAGTTGTGATATTTCTGAAGTTCCAACAATCAGAGATCTTGGATATGGAGATGCTGAACAGGATGAGTTCTCTCCTTTCAAAGGTGGTGAGTCTGAAGCATTGAAGAGGTTAGATGAATGCATGAAAGACAAGTGGGTGGCAAACTTTGAGAAACCCAAGGGTAATCCATCTGCATTTCTTAAGCCAGCAACAACTGTTTTATCACCTTATCTGAAATTTGGTTGTCTCTCCCCCAGATATTTCTACCAGAGTATTCAAGATGTATATAAAAGTATGCCGAAGCATACATTACCTCCCGTTTCTCTTATAGGACAGTTGTTGTGGCGAGAATTCTTTTACACGGCTGCTTTTGGGACTCCAAATTTTGATAGGATGAAAGGCAATAGGATATGCAAGCAGATTCCTTGGAAGGATGATGATAAACTGCTGGAGGCTTGGAGGGAGGCTAGGACAGGATTTCCTTGGATTGATGCTATCATGGTTCAGCTACGCAAATGGGGTTGGATGCATCATCTGGCACGGCATTCTGTTGCATGTTTTCTAACTCGAGGCGATCTGTTTGTTCATTGGGAAAAAGGACGAGATGTCTTCGAGAGGCTTCTGATTGATTCAGATTGGGCAATTAATAATGGAAACTGGATGTGGCTTTCTTGTTCATCTTTCTTTTATCAGTATAATCGTATTTATTCTCCAACTACATTTGGTAAGAAGTATGACCCTAATGGCGACTATATTAGGCATTTTCTCCCAGTCTTAAAAGATATGCCCAGGGAGTACATTTATGAACCCTGGACGGCTCCTAAAAGCATTCAGACCAAAGCAAATTGCATAATTGGCAAAGACTACCCAATGCCAGTGGTTTCTCATGATTCTGCGAGTAAAGAGTGCAGAAGGAAAATGGGCGAGGCATATGCATTGAATAAAGAATTAAATGGTTTGGTTAGTGAAGATGATCTGAAAAATTTGAGGAGGAAATTAGATGAGAGTGAAGGGCAAGAGGCTGGAGCTAAAAGATATAAGCAACAGCTGATTGGCTGA >Glyma08g22400.2 sequence type=CDS gene model=Glyma08g22400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTAAGGAAAGGCGCGAATCCCATGATTTTGTTCAAACCTTCATCAGCTATGCGATTGTCTCCTTGTGCGAACACCACTTCAATGAGTTCCGGATCGGGTTCACTTTTGTGGTTCCGGAAGGGTCTTCGGATCCATGACAACCCCGCTCTCGAAGTCGCTTCGCGTGGAGCCTCTCATCTCTACCCTGTCTTTGTCATCGACCCGCATTTCATGGAACCCGACCCGAATTCTTCCGCACCCGGATCCTCTCGCGCGGGTCTGAACCGCATCAAGTTCTTGCTGGAGTGCCTCGTTGACCTTGACCTCAACCTCAAGAACCTTGGCTCAAGACTTTTGATTCTCAAGGGTGACCCTGCTGAAGTTGTCATTCGATGCTTGAAGGAGTTGCATGTTAAAAAGCTATGCTTTGAGTACGACACTGAACCGTATTATCAGGCTCTGGATGTTAAAGTTAAGAACTTTGCACTTGCTGCTGGAATTGAGGTTTTCTCTCCTGTAAGTCATACACTCTTCAATCCCACGGATATCATAGAGAAGAATGGAGGGAAGCCGCCGCTTAGTTATCAATCGTTTGTCAAGCTTGCTGGGGAACCACCATCTTCTCTCTCTACTGTGTACTCTTCACTTCCTCCAGTTGGCAATCTTGGAAGTTGTGATATTTCTGAAGTTCCAACAATCAGAGATCTTGGATATGGAGATGCTGAACAGGATGAGTTCTCTCCTTTCAAAGGTGGTGAGTCTGAAGCATTGAAGAGGTTAGATGAATGCATGAAAGACAAGAAGTGGGTGGCAAACTTTGAGAAACCCAAGGGTAATCCATCTGCATTTCTTAAGCCAGCAACAACTGTTTTATCACCTTATCTGAAATTTGGTTGTCTCTCCCCCAGATATTTCTACCAGAGTATTCAAGATGTATATAAAAGTATGCCGAAGCATACATTACCTCCCGTTTCTCTTATAGGACAGTTGTTGTGGCGAGAATTCTTTTACACGGCTGCTTTTGGGACTCCAAATTTTGATAGGATGAAAGGCAATAGGATATGCAAGCAGATTCCTTGGAAGGATGATGATAAACTGCTGGAGGCTTGGAGGGAGGCTAGGACAGGATTTCCTTGGATTGATGCTATCATGGTTCAGCTACGCAAATGGGGTTGGATGCATCATCTGGCACGGCATTCTGTTGCATGTTTTCTAACTCGAGGCGATCTGTTTGTTCATTGGGAAAAAGGACGAGATGTCTTCGAGAGGCTTCTGATTGATTCAGATTGGGCAATTAATAATGGAAACTGGATGTGGCTTTCTTGTTCATCTTTCTTTTATCAGTATAATCGTATTTATTCTCCAACTACATTTGGTAAGAAGTATGACCCTAATGGCGACTATATTAGGCATTTTCTCCCAGTCTTAAAAGATATGCCCAGGGAGTACATTTATGAACCCTGGACGGCTCCTAAAAGCATTCAGACCAAAGCAAATTGCATAATTGGCAAAGACTACCCAATGCCAGTGGTTTCTCATGATTCTGCGAGTAAAGAGTGCAGAAGGAAAATGGGCGAGGCATATGCATTGAATAAAGAATTAAATGGTTTGGTTAGTGAAGATGATCTGAAAAATTTGAGGAGGAAATTAGATGAGAGTGAAGGGCAAGAGGCTGGAGCTAAAAGATATAAGCAACAGCTGATTGGCTGA
>Glyma08g22400.1 sequence type=predicted peptide gene model=Glyma08g22400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLRKGANPMILFKPSSAMRLSPCANTTSMSSGSGSLLWFRKGLRIHDNPALEVASRGASHLYPVFVIDPHFMEPDPNSSAPGSSRAGLNRIKFLLECLVDLDLNLKNLGSRLLILKGDPAEVVIRCLKELHVKKLCFEYDTEPYYQALDVKVKNFALAAGIEVFSPVSHTLFNPTDIIEKNGGKPPLSYQSFVKLAGEPPSSLSTVYSSLPPVGNLGSCDISEVPTIRDLGYGDAEQDEFSPFKGGESEALKRLDECMKDKWVANFEKPKGNPSAFLKPATTVLSPYLKFGCLSPRYFYQSIQDVYKSMPKHTLPPVSLIGQLLWREFFYTAAFGTPNFDRMKGNRICKQIPWKDDDKLLEAWREARTGFPWIDAIMVQLRKWGWMHHLARHSVACFLTRGDLFVHWEKGRDVFERLLIDSDWAINNGNWMWLSCSSFFYQYNRIYSPTTFGKKYDPNGDYIRHFLPVLKDMPREYIYEPWTAPKSIQTKANCIIGKDYPMPVVSHDSASKECRRKMGEAYALNKELNGLVSEDDLKNLRRKLDESEGQEAGAKRYKQQLIG* >Glyma08g22400.2 sequence type=predicted peptide gene model=Glyma08g22400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLRKGANPMILFKPSSAMRLSPCANTTSMSSGSGSLLWFRKGLRIHDNPALEVASRGASHLYPVFVIDPHFMEPDPNSSAPGSSRAGLNRIKFLLECLVDLDLNLKNLGSRLLILKGDPAEVVIRCLKELHVKKLCFEYDTEPYYQALDVKVKNFALAAGIEVFSPVSHTLFNPTDIIEKNGGKPPLSYQSFVKLAGEPPSSLSTVYSSLPPVGNLGSCDISEVPTIRDLGYGDAEQDEFSPFKGGESEALKRLDECMKDKKWVANFEKPKGNPSAFLKPATTVLSPYLKFGCLSPRYFYQSIQDVYKSMPKHTLPPVSLIGQLLWREFFYTAAFGTPNFDRMKGNRICKQIPWKDDDKLLEAWREARTGFPWIDAIMVQLRKWGWMHHLARHSVACFLTRGDLFVHWEKGRDVFERLLIDSDWAINNGNWMWLSCSSFFYQYNRIYSPTTFGKKYDPNGDYIRHFLPVLKDMPREYIYEPWTAPKSIQTKANCIIGKDYPMPVVSHDSASKECRRKMGEAYALNKELNGLVSEDDLKNLRRKLDESEGQEAGAKRYKQQLIG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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