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Report for Sequence Feature Glyma08g22190

Feature Type:gene_model
Chromosome:Gm08
Start:16879873
stop:16883505
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g22190
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G15540AT Annotation by Michelle Graham. TAIR10: indole-3-acetic acid inducible 19 | chr3:5264100-5265378 FORWARD LENGTH=197 SoyBaseE_val: 7.00E-75ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009630GO-bp Annotation by Michelle Graham. GO Biological Process: gravitropism SoyBaseN/AISS
GO:0009638GO-bp Annotation by Michelle Graham. GO Biological Process: phototropism SoyBaseN/AISS
GO:0009733GO-bp Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus SoyBaseN/AISS
GO:0009741GO-bp Annotation by Michelle Graham. GO Biological Process: response to brassinosteroid stimulus SoyBaseN/AISS
GO:0048527GO-bp Annotation by Michelle Graham. GO Biological Process: lateral root development SoyBaseN/AISS
GO:0080086GO-bp Annotation by Michelle Graham. GO Biological Process: stamen filament development SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PF02309PFAM AUX/IAA family JGI ISS
UniRef100_P13088UniRef Annotation by Michelle Graham. Most informative UniRef hit: Auxin-induced protein AUX22 n=1 Tax=Glycine max RepID=AUX22_SOYBN SoyBaseE_val: 2.00E-139ISS
UniRef100_P13088UniRef Annotation by Michelle Graham. Best UniRef hit: Auxin-induced protein AUX22 n=1 Tax=Glycine max RepID=AUX22_SOYBN SoyBaseE_val: 2.00E-139ISS

Expression Patterns of Glyma08g22190
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g22190
ParalogEvidenceComments
Glyma07g03840 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g22190 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g207900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g22190
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g22190
>Glyma08g22190.1   sequence type=CDS   gene model=Glyma08g22190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCAAAGAAGGTCTTGGACTTGAAATCACTGAGCTAAGGTTGGGTCTACCTGATGCGGAGCATCAAGTAAGTGTAGTCAATAAGAAAAATGAGAAGAAGAGGGCATTCTCGGAAATTGATGATGGTGTTGGAGATGAAAATAGCTCCTCCGGCGGAGGCGACCGGAAAATGGAGACGAATAAGAGTCAAGTGGTGGGGTGGCCTCCGGTGTGCTCTTACCGGAAGAAGAACAGCATGAACGAAGGTGCTTCAAAGATGTACGTGAAGGTTAGCATGGACGGTGCTCCTTTCTTGCGTAAAATTGATTTGGGTCTGCATAAGGGCTACTCAGATTTAGCTTTGGCTTTGGACAAGCTCTTTGGTTGCTATGGAATGGTGGAGGCGTTGAAAAATGCAGACAATTCTGAACACGTTCCCATTTATGAGGACAAAGATGGTGATTGGATGCTTGTTGGAGATGTCCCTTGGGAAATGTTTATGGAGTCATGCAAGAGGCTGAGGATTATGAAGAAATCAGATGCGAAGGGCTTCGGTTTGCAACCAAAAGGATCTTTAAAGGGATTCATAGAAAGCGCGGCAAAGTGA
Predicted protein sequences of Glyma08g22190
>Glyma08g22190.1   sequence type=predicted peptide   gene model=Glyma08g22190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKEGLGLEITELRLGLPDAEHQVSVVNKKNEKKRAFSEIDDGVGDENSSSGGGDRKMETNKSQVVGWPPVCSYRKKNSMNEGASKMYVKVSMDGAPFLRKIDLGLHKGYSDLALALDKLFGCYGMVEALKNADNSEHVPIYEDKDGDWMLVGDVPWEMFMESCKRLRIMKKSDAKGFGLQPKGSLKGFIESAAK*






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