Glyma08g22146 - SoyBase

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Report for Sequence Feature Glyma08g22146

Feature Type:	gene_model
Chromosome:	Gm08
Start:	16822302
stop:	16825821
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g22146

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G80000	AT	Annotation by Michelle Graham. TAIR10: CASC3/Barentsz eIF4AIII binding \| chr1:30093195-30096742 FORWARD LENGTH=605	SoyBase	E_val: 3.00E-90	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF09405	PFAM	CASC3/Barentsz eIF4AIII binding	JGI		ISS
UniRef100_B7FAK7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: cDNA, clone: J100082C16, full insert sequence n=1 Tax=Oryza sativa Japonica Group RepID=B7FAK7_ORYSJ	SoyBase	E_val: 5.00E-95	ISS
UniRef100_UPI0002337E45	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337E45 related cluster n=1 Tax=unknown RepID=UPI0002337E45	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g22146

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g22146 not represented in the dataset	Glyma08g22146 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g22146

Paralog	Evidence	Comments
Glyma07g03880	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g22146 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g207400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g22146

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g22146

Limit To All Plant Sequences

>Glyma08g22146.1   sequence type=CDS   gene model=Glyma08g22146   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGGAGGCGTGAAGCCAGCGATGACGAAGAAGAAGCCGAAGCCGAAGGAGAAGAAGAAGTCACTCATAAGAGGCAAGATCATAAGGTAGAGGTTCCCTCTGATGATGTAGATGACGAAGGAGGTGTTGAAGACTATGATGATGATGATGTTGTTGTTGAAGAAGAAGAAGAGGAGGAGGAAGTGGAAGTTGAAGAAGAGGTGTACGAGAAAAAGGGTGGTGCAAGTGGTGGGGTTGAGGTTGATGTTGAAGGTTCAGTGGATGTGGTTAAGGAACCTGGTGATGATGATGTCAGACCCCCTTTAGAAGATTCTGTTGAGGACCATTCGGAGGAGAAAAAGGAGAACGAACCATTTGCGGTGCCCACAGCTGGAGCTTTTTACATGCACGATGACCGTTTTAGGGATAATGCTGGTGCCTGCCAAAGGCAGATACATGGGGGAAGGAGTCTGTGGGAGGCCAAAGACAACAGGAAATGGGGACATGATAAATATGAGGAAATTACTTTGCACGAAAAGCATTATGAAGAGAGGAGGCCTTCTAAGGGTAATTATCGCAGCCGAGGTAAAAGTCGAGGCAATTATCACGGAGGACATGTTCGAGGAAACAGGACAGGATATAATGACAGTAGCAATCAAAATCAGGTGCCTAAGAGGGTTGTGAGAGGGAGAGGCCCCCAAAAGTATGAACGTACCAATAAAAGCAATGCGGCATCTTCCCAAGTGCAAAATAAACATTCGGGGAGGACTTCCACACATGCTGCCAAGGCAGAATCTGGCCCTGTGCCTGCTAAAAATCAAGTGGTTGCTTCAAATTTGAACTCAGCATCCCTGCCATTTTACCCTTCAGGCTCTTCCAACAAAGATAATAATTTGGCACAAAGAAGGGAGGTGCAAACAGGTGGCAGTAGCAGGAACATTAGTCCTGTTGTTGTGGATGAGGGTTTTCCAGTTCAACAAAACAATGCACAGCTTCGGGGAAAGAATGTTGTTGATTCCATTAGCATGGCAAAGTTGTATATTGATGAATCCATCCCTCCTCCATCTGTTGGAAAGCCTGGATATTCTGCAGTCAGTGCTTCTCAATCTCCTCATCTCAGGGCTTCTGGGACTGGGAGGGGTGTATCAATCCCAGTACAGACGAATTATCAGCGTGCTCACTCACTGAATAAAGTTTCTCCATCTCAATTCCAGGCTATTCAGACAAGTTCTGCACCAGGGTGGAATTCAACTTCTGTGCAAGCTACTGCCCCACAGTTGGGCAATAGGCCTGGCAGTGGGTCTCAATCATCATCTCCCCCCAGAACATCCACGCCAGTGAATTCACATGATTCTGGAGAAATGGATTCAGCATCAGAATCAGGTAAAGCCAAAGGTGCTTCGGTTGGGAAGGGAAGGGGAGGTTCCCAAGGTGCAGGAAGGGGCTCTTTCGTTTATGGTGGGGCACAGGTAATGGGCACCACTGGAAATGTGGCTGTTAGTCATGGAGATCCAAACTTCCCAGCCTTCTTGCCAGTCATGCAATTTGGGGGCCAGCATCCTGGTGGTATGGGAGTTCCTGCTGTTGGCATGGCATTCCCTGGATACGTTGGTCAGCCTCAACTTGGTTTGGGAAAGTCTGAAATGACATGGCTACCAGTGTTGGCTGGTCCTGCAGGAGCTTTAGGGGCTACATACCCATTCCTTCCTGTTGATGGTGCAAGCAGTCGACAATCTGGACAGGCCTCTGCAATGGGTACTTCAAGCAAGGAACATAATGATAAAGCTAATAATGAATTGAAGCCACCTCAGAGATCTGAGCTTGCAAGTGATGAGTTTGGACAGCGGCAGAATAAACCCCGAAGATATTCAGAGATGAATTTTGGTCAGTGA

Predicted protein sequences of Glyma08g22146

Limit To All Plant Sequences

>Glyma08g22146.1   sequence type=predicted peptide   gene model=Glyma08g22146   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRRREASDDEEEAEAEGEEEVTHKRQDHKVEVPSDDVDDEGGVEDYDDDDVVVEEEEEEEEVEVEEEVYEKKGGASGGVEVDVEGSVDVVKEPGDDDVRPPLEDSVEDHSEEKKENEPFAVPTAGAFYMHDDRFRDNAGACQRQIHGGRSLWEAKDNRKWGHDKYEEITLHEKHYEERRPSKGNYRSRGKSRGNYHGGHVRGNRTGYNDSSNQNQVPKRVVRGRGPQKYERTNKSNAASSQVQNKHSGRTSTHAAKAESGPVPAKNQVVASNLNSASLPFYPSGSSNKDNNLAQRREVQTGGSSRNISPVVVDEGFPVQQNNAQLRGKNVVDSISMAKLYIDESIPPPSVGKPGYSAVSASQSPHLRASGTGRGVSIPVQTNYQRAHSLNKVSPSQFQAIQTSSAPGWNSTSVQATAPQLGNRPGSGSQSSSPPRTSTPVNSHDSGEMDSASESGKAKGASVGKGRGGSQGAGRGSFVYGGAQVMGTTGNVAVSHGDPNFPAFLPVMQFGGQHPGGMGVPAVGMAFPGYVGQPQLGLGKSEMTWLPVLAGPAGALGATYPFLPVDGASSRQSGQASAMGTSSKEHNDKANNELKPPQRSELASDEFGQRQNKPRRYSEMNFGQ*

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