Glyma08g22110 - SoyBase

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Report for Sequence Feature Glyma08g22110

Feature Type:	gene_model
Chromosome:	Gm08
Start:	16786230
stop:	16789723
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g22110

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G79990	AT	Annotation by Michelle Graham. TAIR10: structural molecules \| chr1:30084522-30085194 FORWARD LENGTH=152	SoyBase	E_val: 3.00E-80	ISS
GO:0006094	GO-bp	Annotation by Michelle Graham. GO Biological Process: gluconeogenesis	SoyBase	N/A	ISS
GO:0006661	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol biosynthetic process	SoyBase	N/A	ISS
GO:0006886	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular protein transport	SoyBase	N/A	ISS
GO:0007010	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization	SoyBase	N/A	ISS
GO:0010498	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasomal protein catabolic process	SoyBase	N/A	ISS
GO:0016192	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport	SoyBase	N/A	ISS
GO:0000139	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi membrane	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0030117	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane coat	SoyBase	N/A	ISS
GO:0030126	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: COPI vesicle coat	SoyBase	N/A	ISS
GO:0005198	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural molecule activity	SoyBase	N/A	ISS
KOG4697	KOG	Integral membrane protein involved in transport between the late Golgi and endosome	JGI		ISS
PTHR12952	Panther	SYS1	JGI		ISS
PF09801	PFAM	Integral membrane protein S linking to the trans Golgi network	JGI		ISS
UniRef100_I1KV88	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KV88_SOYBN	SoyBase	E_val: 4.00E-103	ISS
UniRef100_Q9SSD6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Coatomer subunit beta'-1 n=1 Tax=Arabidopsis thaliana RepID=Q9SSD6_ARATH	SoyBase	E_val: 2.00E-77	ISS

Expression Patterns of Glyma08g22110

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g22110 not represented in the dataset	Glyma08g22110 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g22110

Paralog	Evidence	Comments
Glyma07g00830	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g22110 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g207000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g22110

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g22110

Limit To All Plant Sequences

>Glyma08g22110.2   sequence type=transcript   gene model=Glyma08g22110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCCAAATATACGAAAACGACTAATTAGAAAGCTAAACGACACTTCCCAGTTTCAACTTCATGCTTCAGTGAATTTCTCTGTGATTTTTCTCCCAAAATTTTCATCTCTCGCCATCGCCGTTGGAGAACGCTCCAATTTTCTCTCCAACAATTCGTTCTTTCCCTTCTCAATTTCCGGCGAGTTCTCCCTCTTCAATTTCTCAATCCAGATCTGGATGCACATGAACCATTGTTTGCATTTGGGGCAACCTTGATTTGGGTTTTTAAGTGCTTTATGGAAACTGTGGTCTTTAAATTTTTAAACTTTTGTCGAATGACGAGTGGCGTGGCTTCAATTGCGGAGGTTTGAGTAACTGGGTCGCTGCTGCAGTGGTGGAAGTTTGAGAATTGGGTTTCGATTTGTTTGAGGAAGTTTTCGGGGAGGACTAGGTGTTTGTCGGGTCGGCGTCATGTTCTATGGTTCGGTGGTATGGGACCCTTGGCTTATTGTTGCTCAGATTGTGTGTCTTCAATGTTTGTACTATATCACCCTGGGGTTGTTCTTGTCGATACTTGTTGGCACACGTGTGTCTCGGTTGAGTCTCGTGTATTTCTTTGACTATGTTGCGATTACTACCTCTACCATTACTGGTTGGTGTGTTATTGCTTCATTTCTGCTCAGCTCACTTGCAGGGGCGGTATATGTGTTTTATTTGATCGAAAGATCAAAGAAGTGCTTGGATTTTTCAGCCACCATCTACATTGTCCATCTTTTTATATGCATTGTGTATGGGGGTTGGCCCTCCTCTATAACATGGTGGATTGTGAATGGTACTGGAATTGCAGTGATGGCTTTGCTAGGTGAACGTCTGTGCATGAAGCGTGAACTCCAGGAGATATCATTAACACGATTTCGTTCAAATGTTTGATGGGCAGAAGTACTTTTGAATGCAAGAAAGAAGTGCTGCAGGATGGCAACAACTTTTGCTTCTATGTATTGGATGATCTACAAGATAAAGCCCACAAAGTCAATAGTTCTATGCTGTCTCTGAAAGACCTACATTTCCTTTCTATTCTTTAGTTGTAATAGAAATGAAACATACATAACCAGACGAGAGTACATAATATTTCAGGAATTTCCGGAAGCCTTATTGTAATTTAATTCTATTCTATTTCGATTTTCCTTCCCTTTAGTGTTGTTGGTTAAGTTGATGCATTTAGTTGATAGAGTTTTTATTCTTTTTACCCTTTTGTGAGTTTTCGGATCTGTTTACAATCACGGAATTATGTTACTTCTTTCTGTCCGATAACCTTTAATGAGGTTCTAATATCAGGTAGCAGAATGAACCTCTCAGTCAGATTTGTTTTTTCACTTCTTCATTGATTGATATATTGCAGCACACTTTGTGGTTAATCTTCCTCTATTTAGTTTAATTGCTAATGTTACATTGTCACTGTACTTTCGCT

Coding sequences of Glyma08g22110

Limit To All Plant Sequences

>Glyma08g22110.1   sequence type=CDS   gene model=Glyma08g22110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCTATGGTTCGGTGGTATGGGACCCTTGGCTTATTGTTGCTCAGATTGTGTGTCTTCAATGTTTGTACTATATCACCCTGGGGTTGTTCTTGTCGATACTTGTTGGCACACGTGTGTCTCGGTTGAGTCTCGTGTATTTCTTTGACTATGTTGCGATTACTACCTCTACCATTACTGGTTGGTGTGTTATTGCTTCATTTCTGCTCAGCTCACTTGCAGGGGCGGTATATGTGTTTTATTTGATCGAAAGATCAAAGAAGTGCTTGGATTTTTCAGCCACCATCTACATTGTCCATCTTTTTATATGCATTGTGTATGGGGGTTGGCCCTCCTCTATAACATGGTGGATTGTGAATGGTACTGGAATTGCAGTGATGGCTTTGCTAGGTGAACGTCTGTGCATGAAGCGTGAACTCCAGGAGATATCATTAACACGATTTCGTTCAAATGTTTGA

>Glyma08g22110.2   sequence type=CDS   gene model=Glyma08g22110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCTATGGTTCGGTGGTATGGGACCCTTGGCTTATTGTTGCTCAGATTGTGTGTCTTCAATGTTTGTACTATATCACCCTGGGGTTGTTCTTGTCGATACTTGTTGGCACACGTGTGTCTCGGTTGAGTCTCGTGTATTTCTTTGACTATGTTGCGATTACTACCTCTACCATTACTGGTTGGTGTGTTATTGCTTCATTTCTGCTCAGCTCACTTGCAGGGGCGGTATATGTGTTTTATTTGATCGAAAGATCAAAGAAGTGCTTGGATTTTTCAGCCACCATCTACATTGTCCATCTTTTTATATGCATTGTGTATGGGGGTTGGCCCTCCTCTATAACATGGTGGATTGTGAATGGTACTGGAATTGCAGTGATGGCTTTGCTAGGTGAACGTCTGTGCATGAAGCGTGAACTCCAGGAGATATCATTAACACGATTTCGTTCAAATGTTTGA

Predicted protein sequences of Glyma08g22110

Limit To All Plant Sequences

>Glyma08g22110.1   sequence type=predicted peptide   gene model=Glyma08g22110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFYGSVVWDPWLIVAQIVCLQCLYYITLGLFLSILVGTRVSRLSLVYFFDYVAITTSTITGWCVIASFLLSSLAGAVYVFYLIERSKKCLDFSATIYIVHLFICIVYGGWPSSITWWIVNGTGIAVMALLGERLCMKRELQEISLTRFRSNV*

>Glyma08g22110.2   sequence type=predicted peptide   gene model=Glyma08g22110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFYGSVVWDPWLIVAQIVCLQCLYYITLGLFLSILVGTRVSRLSLVYFFDYVAITTSTITGWCVIASFLLSSLAGAVYVFYLIERSKKCLDFSATIYIVHLFICIVYGGWPSSITWWIVNGTGIAVMALLGERLCMKRELQEISLTRFRSNV*

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