Glyma08g22100 - SoyBase

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Report for Sequence Feature Glyma08g22100

Feature Type:	gene_model
Chromosome:	Gm08
Start:	16779202
stop:	16784587
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g22100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G79930	AT	Annotation by Michelle Graham. TAIR10: heat shock protein 91 \| chr1:30063781-30067067 REVERSE LENGTH=831	SoyBase	E_val: 0	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0009408	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to heat	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
KOG0103	KOG	Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily	JGI		ISS
PTHR19375	Panther	HEAT SHOCK PROTEIN 70KDA	JGI		ISS
PTHR19375:SF14	Panther	gb def: hsp 70 family protein [schizosaccharomyces pombe]	JGI		ISS
PF00012	PFAM	Hsp70 protein	JGI		ISS
UniRef100_G7II48	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 97 kDa heat shock protein n=1 Tax=Medicago truncatula RepID=G7II48_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KV87	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KV87_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g22100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g22100

Paralog	Evidence	Comments
Glyma07g00820	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g22100 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g206900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g22100

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g22100

Limit To All Plant Sequences

>Glyma08g22100.1   sequence type=CDS   gene model=Glyma08g22100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCGTGGTGGGATTCGATTTCGGTAACGAGAGTTGCATTGTTGCGGTTGCGAGGCAGAGAGGGATTGACGTTGTGCTCAATGATGAGTCCAAGCGTGAAACGCCCGCCATTGTGTGCTTCGGTGACAAGCAACGCTTCATTGGCACTGCTGGTGCTGCCTCCACTATGATGAACCCTAAGAATTCAATCTCCCAGTTTAAGAGACTCATTGGTAGGAAATTCTCTGATCCCGAATTGCAGCGGGATCTTAAGTCGTTGCCGTTTCTTGTCACCGAGGGGAGTGATGGGTACCCGTTGATTCATGCGCGGTACATGGGTGAGTCCAAGACGTTTACGCCTACCCAAGTGTTTGGAATGATGCTGTCGAATCTTAAGGAAATTGCGGAGAAGAATCTTACTACAGCGGTTGTGGATTGTTGCATTGGAATCCCGGTTTATTTTACTGATCTGCAGAGAAGGGCGGTGCTGGATGCGGCCACGATTGCTGGTCTGCACCCACTTCGGTTGATTCAGGAAATGACTGCCACTGCCTTGGCCTATGGGATTTATAAAACGGACCTTCCAGAAAACGATCAGCTGAATGTTGCGTTTGTTGATGTTGGGCATGCTAGCATGCAAGTGTGCATTGCTGGATTCAAGAAGGGGCAGCTGAAAGTGTTGGCTCATTCATATGATAGGTCTCTCGGCGGTAGGGATTTTGACGAGGTTTTGTTCCATCACTTTGCTGGGAAGTTTAAGGAGGAGTACAAGATTGATGTTTTCCAGAATGCCAGGGCTTGCATCAGGCTCAGGACTGCCTGTGAGAAGATCAAGAAGATGCTTAGTGCGAATCCTGTGGCGCCTCTCAACATTGAGTGCTTGATGGATGAGAAGGATGTCCGGGGCTTCATCAAGCGAGATGAGTTTGAGCAACTAAGTCTTCCAATTTTGGAACGTGTGAAGGGACCTCTGGAGAAGGCACTTGCTGAAGCAGGTCTTACCGTTGAAAATGTACACACAGTTGAGGTGGTTGGTTCAGGTTCTCGGGTACCGGCCATTAACAAAATATTGACAGAGTTTTTCAAAAAGGAGCCTAGGCGGACAATGAATGCTAGTGAGTGTGTTGCTAGGGGCTGTGCGTTGGAATGCGCAATTCTTAGTCCAACGTTCAAAGTACGAGAATTTCAGGTCAACGAAAGCCTTCCTTTCTCGATTTCTCTTTCATGGAAAGGTTCTGGTCCAGATGCACAGGACAATGGATCAGAAAATCAGCAGAGTTCCCTTGTTTTTCCTAAGGGTAATCCCATACCAAGTATCAAGGCACTGACATTCTGCAGGGCAGGAACATTCTCTGTTGATGTATTATATGATGATGCAAGTGGGCTGCAAACACCTGCTAAGATCAGCACATATACTATTGGTCCTTTCCAAACTACAAATGGTGAAAGGGCAAAAGTTAAAGTGAAAGTTCGTCTGAATCTGCACGGAATTGTATCCCTTGAGTCTGCAACACTCCTGGAAGAGGAAAAAGTTGGGGTTCCAGTTACCAAAGAGGCAGCAGGGGAAAATACTAAGATGGACATTGATGAAGTCCCTGCTGAGGCTGCTGCACCTCCCGCCTCCAATGACACTGGTGCTAATATGGAAGGTGCAAAGGCTAGTACTGATGCCTCTGGGGTTGAAAATGGCATCCCTGAGGGTGGAGATAAGCCTTTGCAAAAGGATACTGATACCAAGGTTCAGGCTCCAAAGAAAAAGGTTAAGAAAACAAACATTCCTGTAGCAGAGTTAGTTTATGGAGCAATGGTGCCTGTGGATGTCCAGAAAGCACTAGAAAAGGAGTTTGAAATGGCTTTGCAAGATCGTGTGATGGAAGAAACAAAAGACAAGAAAAATGCAGTTGAGGCTTATGTTTATGACATGAGAAACAAGCTTAATGACGAATACCAAGAGTTTGTCACTGCTTCAGAGAGAGATGATTTTACTGCTAAACTTCAGGAAGTGGAAGATTGGCTTTATGATGAGGGTGAAGATGAAACTAAAGGTGTATATATTGCCAAGCTTGAAGAACTCAAAAAGCAAGGTGATCCAATTGATGGGCGATACGAAGAATTCACGGAGAGGGGTACTATAATTGAACAGTTCGTGTATTGTATAAATAGTTACAGACAAGTTGCAATGTCAAATGATCCTAGATTTGAGCACATTGACATTAACGAGAAACAGAAGGTCATAAATAAATGTGTTGAAGCTGAGAAGTGGTTTAATGAGAAGCAGCAGCAGCAGAGCTCACTTCCAAAATATGCCAACCCTGTACTCTTGTCAGCTGAAATGAGAAAGAAAGCTGAAGATGTCGATAGGTTCTGCAAGCCGATTATGACAACACAGAAGCCAACAAAGGCAGTTACTCCAGCAGGACCAGCAACCCCATCTTCTCAGAGTGATGAGCAACAGCAACCCCAGGGGGATTCTGATGTCAACAGTAATGAGAATGCTGGGAATAGCAGTAGTCAGGCTGCACCAGCATCTACCGAACCAATGGAGACTGAAAAGTCTGAGAACACAGGCTCTGCCTAA

Predicted protein sequences of Glyma08g22100

Limit To All Plant Sequences

>Glyma08g22100.1   sequence type=predicted peptide   gene model=Glyma08g22100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSVVGFDFGNESCIVAVARQRGIDVVLNDESKRETPAIVCFGDKQRFIGTAGAASTMMNPKNSISQFKRLIGRKFSDPELQRDLKSLPFLVTEGSDGYPLIHARYMGESKTFTPTQVFGMMLSNLKEIAEKNLTTAVVDCCIGIPVYFTDLQRRAVLDAATIAGLHPLRLIQEMTATALAYGIYKTDLPENDQLNVAFVDVGHASMQVCIAGFKKGQLKVLAHSYDRSLGGRDFDEVLFHHFAGKFKEEYKIDVFQNARACIRLRTACEKIKKMLSANPVAPLNIECLMDEKDVRGFIKRDEFEQLSLPILERVKGPLEKALAEAGLTVENVHTVEVVGSGSRVPAINKILTEFFKKEPRRTMNASECVARGCALECAILSPTFKVREFQVNESLPFSISLSWKGSGPDAQDNGSENQQSSLVFPKGNPIPSIKALTFCRAGTFSVDVLYDDASGLQTPAKISTYTIGPFQTTNGERAKVKVKVRLNLHGIVSLESATLLEEEKVGVPVTKEAAGENTKMDIDEVPAEAAAPPASNDTGANMEGAKASTDASGVENGIPEGGDKPLQKDTDTKVQAPKKKVKKTNIPVAELVYGAMVPVDVQKALEKEFEMALQDRVMEETKDKKNAVEAYVYDMRNKLNDEYQEFVTASERDDFTAKLQEVEDWLYDEGEDETKGVYIAKLEELKKQGDPIDGRYEEFTERGTIIEQFVYCINSYRQVAMSNDPRFEHIDINEKQKVINKCVEAEKWFNEKQQQQSSLPKYANPVLLSAEMRKKAEDVDRFCKPIMTTQKPTKAVTPAGPATPSSQSDEQQQPQGDSDVNSNENAGNSSSQAAPASTEPMETEKSENTGSA*

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