SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G52343 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32680.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:19494226-19495718 REVERSE LENGTH=249 | SoyBase | E_val: 8.00E-30 | ISS |
| UniRef100_UPI0002338E00 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002338E00 related cluster n=1 Tax=unknown RepID=UPI0002338E00 | SoyBase | E_val: 0 | ISS |
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Glyma08g22090 not represented in the dataset |
Glyma08g22090 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g00800 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g206700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g22090.2 sequence type=transcript gene model=Glyma08g22090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTCCTTCACTCCTCTGCTATCAAGATGTATTACCTCGACAATTGTCTATGGTTATGGAATAGTAAAACATCAAGGAGAATCTATTTTGATAATGATAAGTGAAATTAACACTGACCTTCCTTGCGGTGCTGAAAATAAACGTAGTGTCTCTCTTTCTTCAGCAAGGCTAAAACATCAGGGCGGATTTAGGTACTCAAACATGGAAAGTTTCGACTTCAACCCTGAAGAGGAACCTCTTATACAGGATTCTGATACTATTACAGAAGCCAATAATCAAGTGTCTGAGGGTAATGTTGCCAAAATGAAACCACCTTCTGTCCCGTCAAACACAAAAAATCCAGCACATGACACACAACAGCTAAAGCAACCTCTCAGGCATAATAAGGATACTTTTTTCTCTTCAAGAGAGCTGAATATCTGCATTTTAGCTTCTGAGCCCACACGCGCCCTCAGTTCTCTGATAATAGCATTGCTGGTAGTTTTTTATTACATGATTTCAGAGAGAGTTTTGGCCTCAAGGCCTCTTTACATACTCTTGTTAACTGATGTTACAATTGTGCTTGCTCGCCTATATGGTGGAAAGGCAAGTGTCTTGGAAGAAGCTGAGGGAGAAAAAGTTAAAGCTACTGGAGATGGACACAATTGGGGTGATGCAGTAAAGCTTATGGAAAGGGGTTTGGTGACCTACCAGGCCATTAGAGGACTTTTCATAGATTGCAGTATTTATCTAGTGGTGGTTGTATGTGGTACCTCCTTGATGTAGTTCTGGCTGCTTGAGAATTGAGTTTGAGTACTTGCAATATCCCCAATTCCCCTTTTGGATGCCATTATATATTTGATACATTTTATGAATGTCTGAGAGCAGAGCTAAAATCATTTCAATTTGATGCCTCAATGATGCAGCCACACAGTATAATACAAGCCTTAATGGAAATCATTCCTCAGGATATGAGGTTTGAAGTTTGAACACTCGTATGAGAATAGGTGACATTTCACTCGGATGATAACTTTATTTGGTAGCATTGCATCTGGCAAAGATTTTGACTTGCTTGGTGAACAATTACACTCAATTTTTTGCTAATGATAACAAATAAT
>Glyma08g22090.1 sequence type=CDS gene model=Glyma08g22090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGAGCAACGATGGAGGAGGAAAAGAAGAAAGAAGAAGAAGAATTGCAGAGAGAGGTTCAGATCGCATGGCCTTAATAACGGGTCGAATCAATGCGCTTCCTCCGACACCACCCTCTTCCGCGTCATCCCCAACCCACCGCAACATTCCTCGTCACGCGCAATCCATGTCGGTCGCAGCTTTCGACTCCAACTCAGATGATCAGCAGCAGCATCATCTTCCCCCTCGCCACCAGCGCCCTCAGTCGTTGTCTGCATTCACCGATTACCATGAAGATCTCACCGGCGGTGCTGAAAATAAACGTAGTGTCTCTCTTTCTTCAGCAAGGCTAAAACATCAGGGCGGATTTAGGTACTCAAACATGGAAAGTTTCGACTTCAACCCTGAAGAGGAACCTCTTATACAGGATTCTGATACTATTACAGAAGCCAATAATCAAGTGTCTGAGGGTAATGTTGCCAAAATGAAACCACCTTCTGTCCCGTCAAACACAAAAAATCCAGCACATGACACACAACAGCTAAAGCAACCTCTCAGGCATAATAAGGATACTTTTTTCTCTTCAAGAGAGCTGAATATCTGCATTTTAGCTTCTGAGCCCACACGCGCCCTCAGTTCTCTGATAATAGCATTGCTGGTAGTTTTTTATTACATGATTTCAGAGAGAGTTTTGGCCTCAAGGCCTCTTTACATACTCTTGTTAACTGATGTTACAATTGTGCTTGCTCGCCTATATGGTGGAAAGGCAAGTGTCTTGGAAGAAGCTGAGGGAGAAAAAGTTAAAGCTACTGGAGATGGACACAATTGGGGTGATGCAGTAAAGCTTATGGAAAGGGGTTTGGTGACCTACCAGGCCATTAGAGGACTTTTCATAGATTGCAGTATTTATCTAGTGGTGGTTGTATGTGGTACCTCCTTGATGTAG >Glyma08g22090.2 sequence type=CDS gene model=Glyma08g22090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATAAGTGAAATTAACACTGACCTTCCTTGCGGTGCTGAAAATAAACGTAGTGTCTCTCTTTCTTCAGCAAGGCTAAAACATCAGGGCGGATTTAGGTACTCAAACATGGAAAGTTTCGACTTCAACCCTGAAGAGGAACCTCTTATACAGGATTCTGATACTATTACAGAAGCCAATAATCAAGTGTCTGAGGGTAATGTTGCCAAAATGAAACCACCTTCTGTCCCGTCAAACACAAAAAATCCAGCACATGACACACAACAGCTAAAGCAACCTCTCAGGCATAATAAGGATACTTTTTTCTCTTCAAGAGAGCTGAATATCTGCATTTTAGCTTCTGAGCCCACACGCGCCCTCAGTTCTCTGATAATAGCATTGCTGGTAGTTTTTTATTACATGATTTCAGAGAGAGTTTTGGCCTCAAGGCCTCTTTACATACTCTTGTTAACTGATGTTACAATTGTGCTTGCTCGCCTATATGGTGGAAAGGCAAGTGTCTTGGAAGAAGCTGAGGGAGAAAAAGTTAAAGCTACTGGAGATGGACACAATTGGGGTGATGCAGTAAAGCTTATGGAAAGGGGTTTGGTGACCTACCAGGCCATTAGAGGACTTTTCATAGATTGCAGTATTTATCTAGTGGTGGTTGTATGTGGTACCTCCTTGATGTAG
>Glyma08g22090.1 sequence type=predicted peptide gene model=Glyma08g22090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASNDGGGKEERRRRIAERGSDRMALITGRINALPPTPPSSASSPTHRNIPRHAQSMSVAAFDSNSDDQQQHHLPPRHQRPQSLSAFTDYHEDLTGGAENKRSVSLSSARLKHQGGFRYSNMESFDFNPEEEPLIQDSDTITEANNQVSEGNVAKMKPPSVPSNTKNPAHDTQQLKQPLRHNKDTFFSSRELNICILASEPTRALSSLIIALLVVFYYMISERVLASRPLYILLLTDVTIVLARLYGGKASVLEEAEGEKVKATGDGHNWGDAVKLMERGLVTYQAIRGLFIDCSIYLVVVVCGTSLM* >Glyma08g22090.2 sequence type=predicted peptide gene model=Glyma08g22090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MISEINTDLPCGAENKRSVSLSSARLKHQGGFRYSNMESFDFNPEEEPLIQDSDTITEANNQVSEGNVAKMKPPSVPSNTKNPAHDTQQLKQPLRHNKDTFFSSRELNICILASEPTRALSSLIIALLVVFYYMISERVLASRPLYILLLTDVTIVLARLYGGKASVLEEAEGEKVKATGDGHNWGDAVKLMERGLVTYQAIRGLFIDCSIYLVVVVCGTSLM*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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