Glyma08g22000 - SoyBase

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Report for Sequence Feature Glyma08g22000

Feature Type:	gene_model
Chromosome:	Gm08
Start:	16721920
stop:	16726356
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g22000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G79900	AT	Annotation by Michelle Graham. TAIR10: Mitochondrial substrate carrier family protein \| chr1:30052524-30053599 REVERSE LENGTH=296	SoyBase	E_val: 4.00E-138	ISS
GO:0006561	GO-bp	Annotation by Michelle Graham. GO Biological Process: proline biosynthetic process	SoyBase	N/A	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0006839	GO-bp	Annotation by Michelle Graham. GO Biological Process: mitochondrial transport	SoyBase	N/A	ISS
GO:0006972	GO-bp	Annotation by Michelle Graham. GO Biological Process: hyperosmotic response	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005743	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial inner membrane	SoyBase	N/A	ISS
GO:0000064	GO-mf	Annotation by Michelle Graham. GO Molecular Function: L-ornithine transmembrane transporter activity	SoyBase	N/A	ISS
GO:0005290	GO-mf	Annotation by Michelle Graham. GO Molecular Function: L-histidine transmembrane transporter activity	SoyBase	N/A	ISS
GO:0005476	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carnitine:acyl carnitine antiporter activity	SoyBase	N/A	ISS
GO:0015181	GO-mf	Annotation by Michelle Graham. GO Molecular Function: arginine transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015189	GO-mf	Annotation by Michelle Graham. GO Molecular Function: L-lysine transmembrane transporter activity	SoyBase	N/A	ISS
KOG0762	KOG	Mitochondrial carrier protein	JGI		ISS
PTHR24089	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24089:SF127	Panther		JGI		ISS
PF00153	PFAM	Mitochondrial carrier protein	JGI		ISS
UniRef100_G7JJD6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial carnitine/acylcarnitine carrier protein n=1 Tax=Medicago truncatula RepID=G7JJD6_MEDTR	SoyBase	E_val: 4.00E-171	ISS
UniRef100_UPI0002337E43	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337E43 related cluster n=1 Tax=unknown RepID=UPI0002337E43	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g22000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g22000 not represented in the dataset	Glyma08g22000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g22000

Paralog	Evidence	Comments
Glyma07g00740	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g22000 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g205800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g22000

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g22000

Limit To All Plant Sequences

>Glyma08g22000.1   sequence type=CDS   gene model=Glyma08g22000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTTCTGGCCAGAATTTCTTGCAAGCGGTTCGGGAAGAGAGTTTGTAGCAGGTGGCTTTGGAGGCATTGCTGGTATAATTTCAGGTTATCCACTTGATACTCTTCGAATCAGATTACAAAACTCGAAAAATGGCTCTGCATTCACAATCCTTAGACAAATGGTGTCTAGGGAAGGACCAACTTCTTTGTACCGTGGCATGGGCGCACCATTAGCCTCCGTTACTTTTCAGAATGCAATGGTTTTCCAAACGTACGCAGTTCTGTCAAGGGTATTTGACTCATCTGTTTTTGCTAAAGACCCTCCTTCCTACAAGGGTGTTGCTTTAGGAGGAACGGGTGCCGGGGTTCTCCAAAGTCTATTAATATCCCCTGTGGAGTTGACCAAAGTTCAACTTCAGCTGCAAAACGGAGGCAAGATGACAGAATCTGTAAAAGGTTCTTTGACACTCGCCAAAAATATATGGAGAAAAGAAGGCCTCAGAGGAATCTATCGCGGACTTGGTCTCACAGTGATGAGGGATGGACCTTCTCATGGTTTATACTTCTGGACATACGAATACATGAGGGAACAGCTTCACCCAGGTTGCAGAAAAAGTGGTGAAGAGAGTTTGGATACCATGTTGATAGCAGGAGGATTAGCAGGGGTGACGAGTTGGATTAGTTGCTACCCTTTTGATGTTGTAAAGACAAGACTACAGGCTCAAACACCCTCTTCTATAAAGTACAAAGGCATTATAGATTGTTTCAAAAAGAGTGTTAACGCAGAAGGATACGGTGTGCTATGGCGGGGTTTAGGAACTACAGTTGCCAGAGCGTTCCTCGTAAATGCTGCCGTATTTTCTGCTTATGAGATTTCACTAAGATTATTGTTTAACAATGGGAGTATTCAAATGCAGGAAACACTATAG

Predicted protein sequences of Glyma08g22000

Limit To All Plant Sequences

>Glyma08g22000.1   sequence type=predicted peptide   gene model=Glyma08g22000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDFWPEFLASGSGREFVAGGFGGIAGIISGYPLDTLRIRLQNSKNGSAFTILRQMVSREGPTSLYRGMGAPLASVTFQNAMVFQTYAVLSRVFDSSVFAKDPPSYKGVALGGTGAGVLQSLLISPVELTKVQLQLQNGGKMTESVKGSLTLAKNIWRKEGLRGIYRGLGLTVMRDGPSHGLYFWTYEYMREQLHPGCRKSGEESLDTMLIAGGLAGVTSWISCYPFDVVKTRLQAQTPSSIKYKGIIDCFKKSVNAEGYGVLWRGLGTTVARAFLVNAAVFSAYEISLRLLFNNGSIQMQETL*

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