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Report for Sequence Feature Glyma08g21960

Feature Type:gene_model
Chromosome:Gm08
Start:16704058
stop:16705395
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g21960
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G16080AT Annotation by Michelle Graham. TAIR10: Zinc-binding ribosomal protein family protein | chr3:5454892-5455677 FORWARD LENGTH=95 SoyBaseE_val: 9.00E-57ISS
GO:0001510GO-bp Annotation by Michelle Graham. GO Biological Process: RNA methylation SoyBaseN/AISS
GO:0006412GO-bp Annotation by Michelle Graham. GO Biological Process: translation SoyBaseN/AISS
GO:0042254GO-bp Annotation by Michelle Graham. GO Biological Process: ribosome biogenesis SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005840GO-cc Annotation by Michelle Graham. GO Cellular Compartment: ribosome SoyBaseN/AISS
GO:0022625GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosolic large ribosomal subunit SoyBaseN/AISS
GO:0003735GO-mf Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome SoyBaseN/AISS
KOG3475 KOG 60S ribosomal protein L37 JGI ISS
PTHR10768Panther 60S RIBOSOMAL PROTEIN L37 JGI ISS
PF01907PFAM Ribosomal protein L37e JGI ISS
UniRef100_Q6SPR2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ribosomal protein L37 n=1 Tax=Glycine max RepID=Q6SPR2_SOYBN SoyBaseE_val: 3.00E-58ISS
UniRef100_UPI00019AA977UniRef Annotation by Michelle Graham. Best UniRef hit: UPI00019AA977 related cluster n=1 Tax=unknown RepID=UPI00019AA977 SoyBaseE_val: 3.00E-60ISS

Expression Patterns of Glyma08g21960
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g21960
ParalogEvidenceComments
Glyma07g00700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g21960 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g205500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g21960
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g21960
>Glyma08g21960.1   sequence type=CDS   gene model=Glyma08g21960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTAAGGGAACGGGGAGTTTCGGTAAGAGGAGGAACAAGACCCACACCCTCTGTGTGAGGTGTGGCCGCCGCAGCTTCCACCTCCAGAAGAGTCGTTGCTCTGCGTGCGCTTACCCCGCTGCGCGCACCAGGAAATATAACTGGAGCGTGAAGGCCATTAGGAGAAAGACCACCGGAACTGGAAGGATGAGGTACTTGCGTAACGTGCCTCGCAGATTCAAGAGCGGCTTCAGAGAGGGTACCGAAGCTGCACCCAGGAAGAGAGGAGCTGCTGCCTCTGCCTAA
Predicted protein sequences of Glyma08g21960
>Glyma08g21960.1   sequence type=predicted peptide   gene model=Glyma08g21960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAYPAARTRKYNWSVKAIRRKTTGTGRMRYLRNVPRRFKSGFREGTEAAPRKRGAAASA*






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