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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G15240 | AT | Annotation by Michelle Graham. TAIR10: Phox-associated domain;Phox-like;Sorting nexin, C-terminal | chr1:5243799-5248604 FORWARD LENGTH=1020 | SoyBase | E_val: 0 | ISS |
| GO:0007154 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell communication | SoyBase | N/A | ISS |
| GO:0007165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: signal transduction | SoyBase | N/A | ISS |
| GO:0035556 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0035091 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphatidylinositol binding | SoyBase | N/A | ISS |
| KOG2101 | KOG | Intermediate filament-like protein, sorting nexins, and related proteins containing PX (PhoX) domain(s) | JGI | ISS | |
| PTHR22999 | Panther | PX SERINE/THREONINE KINASE (PXK) | JGI | ISS | |
| PTHR22999:SF1 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF00787 | PFAM | PX domain | JGI | ISS | |
| PF02194 | PFAM | PXA domain | JGI | ISS | |
| PF08628 | PFAM | Sorting nexin C terminal | JGI | ISS | |
| UniRef100_F4HZJ6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Phox (PX) domain-containing protein n=1 Tax=Arabidopsis thaliana RepID=F4HZJ6_ARATH | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002337E41 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002337E41 related cluster n=1 Tax=unknown RepID=UPI0002337E41 | SoyBase | E_val: 0 | ISS |
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Glyma08g21950 not represented in the dataset |
Glyma08g21950 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g00690 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g205400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g21950.1 sequence type=CDS gene model=Glyma08g21950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAACATGCCGCCGAAGCCGAACCAGGTGGCTGTGAGAGACCTCGTCGAGGAAGCTAAGAAACGGATCGTCATCCTCGTCATATGCGTCGTAGGACTCTCCTATCTCATGTCCTTGACAAGCTCCTCAGTTTGGGTCAACTTGCCAGCTGCAGCCTCCTTAATTATTATTCTCCGCTATTTATCACTAGATTTTGAAATGAAGAGAAAAGCTGCAGCATACAACAATAAAGCAGGCTCCACCAATGTTCAGTCTTCAAAGAAGCCTGTTGAAAATCATAAAGTTATTGCAAAGTTTGAGTGGAGAACAAAAGTGAATTCTCCTGTTGTTGAGGATGCAATCGATAACTTCACCAGACATTTAATTTCTGAGTGGGTGACAGATCTTTGGTATTCTCGCTTAACACCAGACAAAGAGGGTCCCGAGGAGTTAGTGCAAATAATTAATGGTGTTCTTGGGGAAATTTCCGGACGCATGAGAAACATAAATTTGATAGATTTTTTAATAAGGGATCTTATTAATCTCATTTGCACACATTTGGAGCTGTTTCGTGCTGCCCACTCAAAGATTGAAAAGCAACATACAGGTTCATTAACAATCGAAAGTCAAGACATGGAACTAAAAATTGTTTTGGCTGCTGAGAACAAATTGCATCCTGCTTTATTTTCTGCAGAAGCCGAGCATAAGGTTTTGCAGCATCTGATGACAGGTCTTATGCATGTTACTTTCAAGTCTGAGGATTTACAGTGTTCTTTCTTTCGATATACTGTCAGGGAGCTTCTTGCATGTGCTGTAATACGGCCTGTCCTAAACTTAGCAAATCCAAGATTTGTTAATGAAAGAATTGAATCTGTGGTAGTTAACAAGACCAAGGTTAACAAGGGGGTTCCTGCAGCTCAAGAGGCATCTCACACTAAACCAGATGAGATACAAATCTCATCTGATGATTTCTCCAAGACTTCAGATCCTTCTGTTACTGGTGTTGAGCTTGTGCAGCTAAGGAATGGTCCATCTAAAAATGCAGAGCCATGTGCTAAAAATAATGCCCGTGATAATATTACTAAAGATCCGTTGCTTTCAATTGATGCTCGACCTTCCCGTACATGGAACTCATTGCCTGCAAACTCCCAAGCTAATGATGACCAAGGCCTTCAACAACATCGCTCAGGAGAGTGGGGAGATATTTTAGATGTCATCTCTCGCAGAAAGACCCAAGCTCTTGCTCCAGAAAATTTTGAGAATATGTGGACTAAAGGCAAAAATTACAAGAAAAAGGATGGTGAGAACCAGTCAAATGAGCATGTTTCGCAGCATCCTGTGGTAGGGAAACTGCCGAAGGTAGATCATATGAAAGCAATATCTGGACCAAAAGAAAGAGATAGTAATTCCAAGCTTATTCTTCCCCCTAAGAGACGCCACATTAATTCTGGACACAGCAGTCAATTCTCTGTAGAAAATACATCCATTAATGTAGACAAGAATGGATCAACTTCAGTTACCTCATACAAAGACGATGAGTCAGTTGCCTCTTTTAAAGATGATGAGCACAGCCACATTTATGGGCAGATGAGTGATTCAGAGAGCAGTACTTCTTATACCTCTGAAGATAACGAAAGTAGTACAGTCACTGGTCTTGATTCCCCTGTCACTAAGGTTTGGGATGGAAAAAGTAATAGAAACCAGGCTGTTTCTTATGTTCATCACCCACTTGAAAATTTTGACCATCACGGTGCAAAGAAAAAGAACAAGAGCCATTCTCGGTATCCAAGATTATCCAGAGCCCAATCTGGCAGTCAAGGGTCTTGGCCTGGTGGTCATAAAACACAAACGTGGCAGGAAGTTGAGAGAACAAGCTTTTTATCTGGAGATGGTCAAGACATACTTAATTCTTCAAAATCACATATAAATTCTGAGGAGTCCAGTGATGATGGTGATATGGAAAGTTTGGGTAGACTTTATAGTGGAGCAGCTGCCTCCTCTTCTGCCTACTCTATTTCTATATCAGATTCTTGTAGTTTGTCTGTTGATCCCCTGAAAAGTTCCTCTGCCGTAGATTCCTTTTACAAGTTGAGATGTGAGGTCTTAGGTGCAAATATTGTGAAGAGTGGCTCAAAAACCTTTGCTGTTTACTCCATATCCGTTACAGATGTAAATAACAACAGTTGGTCGATTAAAAGAAGGTTTCGCCATTTTGAGGAGCTACATCGACGCCTGAAAGAGTTCCCTGAGTATAATCTTCATTTGCCACCAAAACATTTTCTGTCAACTGGTTTAGATGTACCAGTCATTCAAGAGCGGTGTGAATTACTGGATAAATATTTGAAGAAACTCATGCAACTACCAACAGTTTCGGAATCAATTGAAGTATGGGACTTTCTCAGTGTTGATTCTCAGACGTACATATTCTCAAATTCTTTTTCTATCATGGAAACATTATCAGTTGGCTTGAATGCCAAACCATTTCAGAAGACTAAAAACACTTCGAACTTCTCTGCACCTGCAAGTGATCCTGTTTCCTTTCAGAGAGAAAACTGCAGTGCTGAAAGTAAAGAGGCTGTTTTGGGAGCAAGAACTAATGTTGAGGCCAATGGATTGAGGTCAAAAGTAAACAGCACACCTCTTTCTCTGCCAAAAAAGAGTACACATGAACCTAGAAAGTCATTTGACAATTCTAGCAGCAATACAGACATTCAAGCACAGAAGAGTGCACCTTCTCCCAATAACTTGCAGAAGACAGCGAAAGAAAGAGATAATTCAGATCAAGTTTCTGAAGTGCACCATGATGCTTCCGATGCTTTTCCAACAGAGTGGGTGCCACCAAATTTGAGTGTACCCATTTTGGATCTGGTTGATGTTATCTTCCAGGTTCATGATGGTGGATGGATTAGGCGGAAGGCTTTTTGGGTTGCTAAACAAATCTTACAACTAGGAATGGGTGATGCCTTTGATGACTGGTTGATAGAGAAAATTCAGCTTCTCCGTAAGGGTTCAGTGGTTGCTTCAGGGGTCAAGCGAGTTGAGCAAATACTCTGGCCTGATGGAATATTCATAACCAAGCATCCAAATCGACGACCTCCGTCACCTTCTAGTCCATCTCAGAATTCTCCTCATGGCAATCAACCTACACAAGTGTCTTCTCCAAGGTTGGATGATGAGCAGAAACAGGAGGCAGATCGGCGTGCAAAATTTGTATATGAGCTAATGATTGATCATGCACCGCCAGCTATTGTAGGTCTTGTTGGTCGGAAGGAGTACGAGCAATGTGCAAGGGATTTATATTTTTTCCTTCAGTCATCCGTTATCTTGAAGCAGCTGGCTTTTGACATCCTGGAGCTGCTGCTGACATCGGCATTTCCGGAGCTTGATAATGTATTTAAGCAGCTGCATGAAGAAAAGCATAAATTTGGTGAGTTCAGAACACAGTAA
>Glyma08g21950.1 sequence type=predicted peptide gene model=Glyma08g21950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNMPPKPNQVAVRDLVEEAKKRIVILVICVVGLSYLMSLTSSSVWVNLPAAASLIIILRYLSLDFEMKRKAAAYNNKAGSTNVQSSKKPVENHKVIAKFEWRTKVNSPVVEDAIDNFTRHLISEWVTDLWYSRLTPDKEGPEELVQIINGVLGEISGRMRNINLIDFLIRDLINLICTHLELFRAAHSKIEKQHTGSLTIESQDMELKIVLAAENKLHPALFSAEAEHKVLQHLMTGLMHVTFKSEDLQCSFFRYTVRELLACAVIRPVLNLANPRFVNERIESVVVNKTKVNKGVPAAQEASHTKPDEIQISSDDFSKTSDPSVTGVELVQLRNGPSKNAEPCAKNNARDNITKDPLLSIDARPSRTWNSLPANSQANDDQGLQQHRSGEWGDILDVISRRKTQALAPENFENMWTKGKNYKKKDGENQSNEHVSQHPVVGKLPKVDHMKAISGPKERDSNSKLILPPKRRHINSGHSSQFSVENTSINVDKNGSTSVTSYKDDESVASFKDDEHSHIYGQMSDSESSTSYTSEDNESSTVTGLDSPVTKVWDGKSNRNQAVSYVHHPLENFDHHGAKKKNKSHSRYPRLSRAQSGSQGSWPGGHKTQTWQEVERTSFLSGDGQDILNSSKSHINSEESSDDGDMESLGRLYSGAAASSSAYSISISDSCSLSVDPLKSSSAVDSFYKLRCEVLGANIVKSGSKTFAVYSISVTDVNNNSWSIKRRFRHFEELHRRLKEFPEYNLHLPPKHFLSTGLDVPVIQERCELLDKYLKKLMQLPTVSESIEVWDFLSVDSQTYIFSNSFSIMETLSVGLNAKPFQKTKNTSNFSAPASDPVSFQRENCSAESKEAVLGARTNVEANGLRSKVNSTPLSLPKKSTHEPRKSFDNSSSNTDIQAQKSAPSPNNLQKTAKERDNSDQVSEVHHDASDAFPTEWVPPNLSVPILDLVDVIFQVHDGGWIRRKAFWVAKQILQLGMGDAFDDWLIEKIQLLRKGSVVASGVKRVEQILWPDGIFITKHPNRRPPSPSSPSQNSPHGNQPTQVSSPRLDDEQKQEADRRAKFVYELMIDHAPPAIVGLVGRKEYEQCARDLYFFLQSSVILKQLAFDILELLLTSAFPELDNVFKQLHEEKHKFGEFRTQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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