Glyma08g21910 - SoyBase

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Report for Sequence Feature Glyma08g21910

Feature Type:	gene_model
Chromosome:	Gm08
Start:	16668199
stop:	16671440
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g21910

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G79860	AT	Annotation by Michelle Graham. TAIR10: RHO guanyl-nucleotide exchange factor 12 \| chr1:30042172-30044092 REVERSE LENGTH=515	SoyBase	E_val: 0	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0009860	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen tube growth	SoyBase	N/A	ISS
GO:0080092	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of pollen tube growth	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0090406	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: pollen tube	SoyBase	N/A	ISS
GO:0005089	GO-mf	Annotation by Michelle Graham. GO Molecular Function: Rho guanyl-nucleotide exchange factor activity	SoyBase	N/A	ISS
PF03759	PFAM	PRONE (Plant-specific Rop nucleotide exchanger)	JGI		ISS
UniRef100_F6LPV2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Rop guanine nucleotide exchange factor n=1 Tax=Medicago truncatula RepID=F6LPV2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002338DFB	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338DFB related cluster n=1 Tax=unknown RepID=UPI0002338DFB	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g21910

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g21910

Paralog	Evidence	Comments
Glyma07g02250	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g21910 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g204900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g21910

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g21910

Limit To All Plant Sequences

>Glyma08g21910.2   sequence type=transcript   gene model=Glyma08g21910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTCATATAACATGCACCCCACGTTCAATGAACCAAGCTCAAAAAAGAAATAGAAACTAACACAAACCCCATCAAATATTCACCTCCAACTATTTTTTTGCTTGTCAAACTCTCACTCTCCTAAAAAAAACATCTCCCTTTTCATTTGTACTTCTCCCCTGGTATTTTCCTCCCCTGCCACAATGCAACAAACTTGACTTTCCTTATTTCTCTCTCCCTACACGTACCTGAAACCCCATGTTTTGTTCTTGCTTGTTCATCCCTTGACAATTTTCCTTAAAACATATATTTTGATACATTAAGAAAAAGGAAAAAAATGGTTAAAGCAATGGAACAAGAACAGGAAAGTCTCAGGTCCAAACTATTCCTTTTCAAAGGAATGTTGAGAGTGCAGGGAGGCATACAAAGAGTTTGAGCATTGAGAGTGCCAGCGCATTAGATCCTTCTCCTTCGGATGAAGAGCCGGTGTCATCAAGAAGTCAAGGATCAAAACCTCTAAATGATCTGGATAAGGTTCCTAAGCCAAGGATAAGCAAGGAGGAAATTGTAGCCAAAGAAGCCAAAGATAAGATGGTGCAAGATGAAGGAGAGATTTGCTAAACTGCTATTGGGTGAGGACATGTCTGGTGGAGGAAAGGGTGTTTCTTCAGCTTTGGCATTGTCAAATGCATTCACAAACCTTGCAGCTGCTGTTTTCGGTGAACAAAAGCGCCTAGAGCCAATGCCACCAGAAAGGAAAGCAAGATGGAGAAAAGAAATCGATTGGCTTCTATCGGTCACTGATTACATTGTTGAAATGGTTCCTGTGCAACAAAAAAACAAGGATGGCTCAACCATGGAGGTTATGACAACGCGACAAAGAACTGACCTCCACATGAATATCCCTGCCTTACGAAAGCTTGACACAATGCTTATTGATACTCTAGATAACTTCAAAGACCAAAATGAGTTCTATTATGTATCAAAAGATGCAGAGGATTCAGATAGAAATAATGATACCAAGTGGTGGTTGCCTACACCTAAGGTTCCCGCAAACGGTTTATCTGATGCAGCAAGAAGGTTTGTTCAGTATCAGAAAGATTGTGTGAACCAAGTTCTTAAAGCAGCTATGGCCATAAATGCTCAAACTCTATCAGAAATGGAGATCCCTGAAAGCTATATTGAATCCCTACCCAAGAATGGAAGATCAAGTCTTGGGGACTTGATCTACAGGAGCATTACAGATGATTTTTTCGATCCTGATCAGCTCCTATCAGCCATGGACATGTCATCAGAACATAAAATCGTAGATCTCAAGGACAGAATTGAGGCATCCATTGTGATTTGGAGACGGAAGATGAACCAAAAAGATAGCAGCAAATCAGCTTGGGGTTCTGCTGTGAGTATGGAGAAAAGAGAAATCTTTGAAGACAGGGCCGAAACCATCTTACTTCTCCTAAAGCATCGTTTTCCCGGGACTCCCCAATCTGCATTGGATATAAGTAAAATCCAATTCAATCGGGATGTGGGGCACGCTGTTCTTGAAAGCTATTCAAGAATATTGGAAAGTTTGGCTTTCACAGTGCTGTCAAGAATAGAAGATGTACTCCTTGCAGATCAGCAAACTCAAAATCCATCACACTCAGGAACAAAGAGCAGCATTTCGAGAAACCCGGTTCCGAAGCCAGAGAAGTCTCCAACTCCAACTCCTAAAGAAGAGGTAGACAAGAGTGGCTCAGAAGCAATGACACTATCAGATTTCATGGGTTGGAACAATGATCAAGGTGACTCAGACGCTAAGAAAGACCATTTTGCAGATTCAGATGACTTCGACAAAAACATTGATAATGGAAAGCCTCAAAAACTTCCAAACGTAGTGACAGACAAGAAGGTGTCCTACCTTGAGACATTGGGAGGTATGAGGAGTCCAACATCACGCCATTAAGCCCAAAATTGAAATGCAAAACACTTGAAGTGGGAGATAAAAAAAAAAGGAAGGGAAAACAACACGTTTTTGTGAGAAGCATGTGTGGTCTTCGGAGGAGTTGTTTAAAACACAATCATTTATTCTTTATCATCTATTCTTTCTTTTTGTAAATAGGAATGAATGAATATGAACATACAAATCCCAAAATCATCATTGTTTTTGAAGCATTGTCAAGTATGAATTTGTAGTCTGGCAGCCACAAAATGTGATATTTTATGAATTCACAGATGTCATGCTCATGCATGCCTTTCATTGGCATCGTACCGTGAAATACTATATAACTCTATTCGACCTATGATAGAACGAGAGTCGAGCTATATGCCATTTTATTTTTAAATAAACAATTGTCTTATACATATTTATTAATATGTTGGATT

Coding sequences of Glyma08g21910

Limit To All Plant Sequences

>Glyma08g21910.1   sequence type=CDS   gene model=Glyma08g21910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGCAAGAAATGGAACAGATGAAGGAGAGATTTGCTAAACTGCTATTGGGTGAGGACATGTCTGGTGGAGGAAAGGGTGTTTCTTCAGCTTTGGCATTGTCAAATGCATTCACAAACCTTGCAGCTGCTGTTTTCGGTGAACAAAAGCGCCTAGAGCCAATGCCACCAGAAAGGAAAGCAAGATGGAGAAAAGAAATCGATTGGCTTCTATCGGTCACTGATTACATTGTTGAAATGGTTCCTGTGCAACAAAAAAACAAGGATGGCTCAACCATGGAGGTTATGACAACGCGACAAAGAACTGACCTCCACATGAATATCCCTGCCTTACGAAAGCTTGACACAATGCTTATTGATACTCTAGATAACTTCAAAGACCAAAATGAGTTCTATTATGTATCAAAAGATGCAGAGGATTCAGATAGAAATAATGATACCAAGTGGTGGTTGCCTACACCTAAGGTTCCCGCAAACGGTTTATCTGATGCAGCAAGAAGGTTTGTTCAGTATCAGAAAGATTGTGTGAACCAAGTTCTTAAAGCAGCTATGGCCATAAATGCTCAAACTCTATCAGAAATGGAGATCCCTGAAAGCTATATTGAATCCCTACCCAAGAATGGAAGATCAAGTCTTGGGGACTTGATCTACAGGAGCATTACAGATGATTTTTTCGATCCTGATCAGCTCCTATCAGCCATGGACATGTCATCAGAACATAAAATCGTAGATCTCAAGGACAGAATTGAGGCATCCATTGTGATTTGGAGACGGAAGATGAACCAAAAAGATAGCAGCAAATCAGCTTGGGGTTCTGCTGTGAGTATGGAGAAAAGAGAAATCTTTGAAGACAGGGCCGAAACCATCTTACTTCTCCTAAAGCATCGTTTTCCCGGGACTCCCCAATCTGCATTGGATATAAGTAAAATCCAATTCAATCGGGATGTGGGGCACGCTGTTCTTGAAAGCTATTCAAGAATATTGGAAAGTTTGGCTTTCACAGTGCTGTCAAGAATAGAAGATGTACTCCTTGCAGATCAGCAAACTCAAAATCCATCACACTCAGGAACAAAGAGCAGCATTTCGAGAAACCCGGTTCCGAAGCCAGAGAAGTCTCCAACTCCAACTCCTAAAGAAGAGGTAGACAAGAGTGGCTCAGAAGCAATGACACTATCAGATTTCATGGGTTGGAACAATGATCAAGGTGACTCAGACGCTAAGAAAGACCATTTTGCAGATTCAGATGACTTCGACAAAAACATTGATAATGGAAAGCCTCAAAAACTTCCAAACGTAGTGACAGACAAGAAGGTGTCCTACCTTGAGACATTGGGAGGTATGAGGAGTCCAACATCACGCCATTAA

>Glyma08g21910.2   sequence type=CDS   gene model=Glyma08g21910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGGAGAGATTTGCTAAACTGCTATTGGGTGAGGACATGTCTGGTGGAGGAAAGGGTGTTTCTTCAGCTTTGGCATTGTCAAATGCATTCACAAACCTTGCAGCTGCTGTTTTCGGTGAACAAAAGCGCCTAGAGCCAATGCCACCAGAAAGGAAAGCAAGATGGAGAAAAGAAATCGATTGGCTTCTATCGGTCACTGATTACATTGTTGAAATGGTTCCTGTGCAACAAAAAAACAAGGATGGCTCAACCATGGAGGTTATGACAACGCGACAAAGAACTGACCTCCACATGAATATCCCTGCCTTACGAAAGCTTGACACAATGCTTATTGATACTCTAGATAACTTCAAAGACCAAAATGAGTTCTATTATGTATCAAAAGATGCAGAGGATTCAGATAGAAATAATGATACCAAGTGGTGGTTGCCTACACCTAAGGTTCCCGCAAACGGTTTATCTGATGCAGCAAGAAGGTTTGTTCAGTATCAGAAAGATTGTGTGAACCAAGTTCTTAAAGCAGCTATGGCCATAAATGCTCAAACTCTATCAGAAATGGAGATCCCTGAAAGCTATATTGAATCCCTACCCAAGAATGGAAGATCAAGTCTTGGGGACTTGATCTACAGGAGCATTACAGATGATTTTTTCGATCCTGATCAGCTCCTATCAGCCATGGACATGTCATCAGAACATAAAATCGTAGATCTCAAGGACAGAATTGAGGCATCCATTGTGATTTGGAGACGGAAGATGAACCAAAAAGATAGCAGCAAATCAGCTTGGGGTTCTGCTGTGAGTATGGAGAAAAGAGAAATCTTTGAAGACAGGGCCGAAACCATCTTACTTCTCCTAAAGCATCGTTTTCCCGGGACTCCCCAATCTGCATTGGATATAAGTAAAATCCAATTCAATCGGGATGTGGGGCACGCTGTTCTTGAAAGCTATTCAAGAATATTGGAAAGTTTGGCTTTCACAGTGCTGTCAAGAATAGAAGATGTACTCCTTGCAGATCAGCAAACTCAAAATCCATCACACTCAGGAACAAAGAGCAGCATTTCGAGAAACCCGGTTCCGAAGCCAGAGAAGTCTCCAACTCCAACTCCTAAAGAAGAGGTAGACAAGAGTGGCTCAGAAGCAATGACACTATCAGATTTCATGGGTTGGAACAATGATCAAGGTGACTCAGACGCTAAGAAAGACCATTTTGCAGATTCAGATGACTTCGACAAAAACATTGATAATGGAAAGCCTCAAAAACTTCCAAACGTAGTGACAGACAAGAAGGTGTCCTACCTTGAGACATTGGGAGGTATGAGGAGTCCAACATCACGCCATTAA

Predicted protein sequences of Glyma08g21910

Limit To All Plant Sequences

>Glyma08g21910.1   sequence type=predicted peptide   gene model=Glyma08g21910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVQEMEQMKERFAKLLLGEDMSGGGKGVSSALALSNAFTNLAAAVFGEQKRLEPMPPERKARWRKEIDWLLSVTDYIVEMVPVQQKNKDGSTMEVMTTRQRTDLHMNIPALRKLDTMLIDTLDNFKDQNEFYYVSKDAEDSDRNNDTKWWLPTPKVPANGLSDAARRFVQYQKDCVNQVLKAAMAINAQTLSEMEIPESYIESLPKNGRSSLGDLIYRSITDDFFDPDQLLSAMDMSSEHKIVDLKDRIEASIVIWRRKMNQKDSSKSAWGSAVSMEKREIFEDRAETILLLLKHRFPGTPQSALDISKIQFNRDVGHAVLESYSRILESLAFTVLSRIEDVLLADQQTQNPSHSGTKSSISRNPVPKPEKSPTPTPKEEVDKSGSEAMTLSDFMGWNNDQGDSDAKKDHFADSDDFDKNIDNGKPQKLPNVVTDKKVSYLETLGGMRSPTSRH*

>Glyma08g21910.2   sequence type=predicted peptide   gene model=Glyma08g21910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKERFAKLLLGEDMSGGGKGVSSALALSNAFTNLAAAVFGEQKRLEPMPPERKARWRKEIDWLLSVTDYIVEMVPVQQKNKDGSTMEVMTTRQRTDLHMNIPALRKLDTMLIDTLDNFKDQNEFYYVSKDAEDSDRNNDTKWWLPTPKVPANGLSDAARRFVQYQKDCVNQVLKAAMAINAQTLSEMEIPESYIESLPKNGRSSLGDLIYRSITDDFFDPDQLLSAMDMSSEHKIVDLKDRIEASIVIWRRKMNQKDSSKSAWGSAVSMEKREIFEDRAETILLLLKHRFPGTPQSALDISKIQFNRDVGHAVLESYSRILESLAFTVLSRIEDVLLADQQTQNPSHSGTKSSISRNPVPKPEKSPTPTPKEEVDKSGSEAMTLSDFMGWNNDQGDSDAKKDHFADSDDFDKNIDNGKPQKLPNVVTDKKVSYLETLGGMRSPTSRH*

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