Glyma08g21900 - SoyBase

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Report for Sequence Feature Glyma08g21900

Feature Type:	gene_model
Chromosome:	Gm08
Start:	16666495
stop:	16668102
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g21900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G52230	AT	Annotation by Michelle Graham. TAIR10: photosystem I subunit H2 \| chr1:19454902-19455508 FORWARD LENGTH=145	SoyBase	E_val: 9.00E-80	ISS
GO:0006364	GO-bp	Annotation by Michelle Graham. GO Biological Process: rRNA processing	SoyBase	N/A	ISS
GO:0009657	GO-bp	Annotation by Michelle Graham. GO Biological Process: plastid organization	SoyBase	N/A	ISS
GO:0009773	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthetic electron transport in photosystem I	SoyBase	N/A	ISS
GO:0010207	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosystem II assembly	SoyBase	N/A	ISS
GO:0015979	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis	SoyBase	N/A	ISS
GO:0019344	GO-bp	Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process	SoyBase	N/A	ISS
GO:0019684	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction	SoyBase	N/A	ISS
GO:0035304	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009522	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: photosystem I	SoyBase	N/A	ISS
GO:0009534	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0009538	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: photosystem I reaction center	SoyBase	N/A	ISS
GO:0009579	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid	SoyBase	N/A	ISS
GO:0010287	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastoglobule	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF03244	PFAM	Photosystem I reaction centre subunit VI	JGI		ISS
UniRef100_C6SWI9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SWI9_SOYBN	SoyBase	E_val: 1.00E-96	ISS
UniRef100_Q06H28	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Photosystem I psaH protein n=1 Tax=Arachis hypogaea RepID=Q06H28_ARAHY	SoyBase	E_val: 7.00E-91	ISS

Expression Patterns of Glyma08g21900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g21900 not represented in the dataset	Glyma08g21900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g21900

Paralog	Evidence	Comments
Glyma07g02240	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g21900 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g204800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g21900

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g21900

Limit To All Plant Sequences

>Glyma08g21900.2   sequence type=transcript   gene model=Glyma08g21900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGATACTAAATTACTGATACAGGAACAGCTAGCAGAGAAACAAAGTTACAAGTAAAGTAAATTAAGAAGATCATTAATGGCTTCTCTTGCAACCTTAGCTGCTGTTCAACCAGCTGCGCTCAATGGCCTTGCTGGAAGTTCCCTCTCTGGAACTAAGCTCTCTTTCAAGCCCTCTCGCCACACTGTCAAATCCAAGAACTTCAGGAGTGGTGCCGTGGTAGCAAAGTATGGTGACAAGAGTGTGTACTTTGATTTGGAGGATCTGGGCAACACTACGGGGCAGTGGGACTTGTATGGCTCAGATGCACCTTCACCCTACAACCCTCTTCAGGTTTGTTGCTTCTTTACATGTGCATCTTCTTCAATGAGAATCAAACATGAAAAATTATAGATAATTCAATGATATAATATATACTTTGATAACAAAGATGCATGCATAACTTTAGAGTTTAATTTTTTGTATCCATATCACTGTAAAACAATTTTACATTGACAACTGATAAGAAATCATGACAGGTGTGATTTTAAAAGAAAATAACGGTAAAAGTTAATAAATTTATCATATTAATTTGTTATAATTGAATGACCGTAAAAAAATTTATATTGTCAATTTATAAACTATTTTATCTAATTCATATATGATAAGTCTTTGATTTTTATAATAACTAAATTAAAAGTGGTACCTGTATGCATGATTGATTTATGACTTTTTGACATATACACTTACATTTGATAGAAATTATAGTATATAGCTGTTTTATTGATATGGATTTGCAGAGCAAGTTCTTCGAGACATTTGCTGCTCCATTCACAAAGAGGGGATTGTTACTCAAGTTTCTGATATTGGGAGGTGGTTCCACCCTTGCATACTTCAGTGCAACAGCCTCAGGTGACATTCTACCAATCAAGAAGGGACCACAACTTCCACCAAAGCTTGGTCCTCGTGGCAAGATCTAATTTGATTTGTATCAGAGCTCCATCTATTGAGTTCCTTTTTAATTTTTATTTTTCTGGTTTGCATAATGTGTAAGTATGCTTGCAGACTACTTACTATTCAAAGATGCTTCTTTCCAGTCTAATTGAGTGGCATTGCTTTGGTTTTCAATTGAAGCAAAGACATATTTGGAAATTGGAATTGGGATGTTGATCTTAAATTGTTGATTTGGATTCGAGGCTTGTCTAACCAGATATATAACTGTAACTCGCAAAGCTAGCCAGAGCCTTGATTACCTGATTACCTCTTTAACTTGTATAATATTATTTGGTTCATCAAACAATACAACTTTACTTATCACAATA

Coding sequences of Glyma08g21900

Limit To All Plant Sequences

>Glyma08g21900.1   sequence type=CDS   gene model=Glyma08g21900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTCTTGCAACCTTAGCTGCTGTTCAACCAGCTGCGCTCAATGGCCTTGCTGGAAGTTCCCTCTCTGGAACTAAGCTCTCTTTCAAGCCCTCTCGCCACACTGTCAAATCCAAGAACTTCAGGAGTGGTGCCGTGGTAGCAAAGTATGGTGACAAGAGTGTGTACTTTGATTTGGAGGATCTGGGCAACACTACGGGGCAGTGGGACTTGTATGGCTCAGATGCACCTTCACCCTACAACCCTCTTCAGAGCAAGTTCTTCGAGACATTTGCTGCTCCATTCACAAAGAGGGGATTGTTACTCAAGTTTCTGATATTGGGAGGTGGTTCCACCCTTGCATACTTCAGTGCAACAGCCTCAGGTGACATTCTACCAATCAAGAAGGGACCACAACTTCCACCAAAGCTTGGTCCTCGTGGCAAGATCTAA

>Glyma08g21900.2   sequence type=CDS   gene model=Glyma08g21900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTCTTGCAACCTTAGCTGCTGTTCAACCAGCTGCGCTCAATGGCCTTGCTGGAAGTTCCCTCTCTGGAACTAAGCTCTCTTTCAAGCCCTCTCGCCACACTGTCAAATCCAAGAACTTCAGGAGTGGTGCCGTGGTAGCAAAGTATGGTGACAAGAGTGTGTACTTTGATTTGGAGGATCTGGGCAACACTACGGGGCAGTGGGACTTGTATGGCTCAGATGCACCTTCACCCTACAACCCTCTTCAGGTTTGTTGCTTCTTTACATGTGCATCTTCTTCAATGAGAATCAAACATGAAAAATTATAG

Predicted protein sequences of Glyma08g21900

Limit To All Plant Sequences

>Glyma08g21900.1   sequence type=predicted peptide   gene model=Glyma08g21900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASLATLAAVQPAALNGLAGSSLSGTKLSFKPSRHTVKSKNFRSGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSATASGDILPIKKGPQLPPKLGPRGKI*

>Glyma08g21900.2   sequence type=predicted peptide   gene model=Glyma08g21900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASLATLAAVQPAALNGLAGSSLSGTKLSFKPSRHTVKSKNFRSGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNPLQVCCFFTCASSSMRIKHEKL*

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