Glyma08g21890 - SoyBase

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Report for Sequence Feature Glyma08g21890

Feature Type:	gene_model
Chromosome:	Gm08
Start:	16659547
stop:	16665982
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g21890

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G79840	AT	Annotation by Michelle Graham. TAIR10: HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain \| chr1:30037526-30041013 FORWARD LENGTH=747	SoyBase	E_val: 0	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009888	GO-bp	Annotation by Michelle Graham. GO Biological Process: tissue development	SoyBase	N/A	ISS
GO:0009957	GO-bp	Annotation by Michelle Graham. GO Biological Process: epidermal cell fate specification	SoyBase	N/A	ISS
GO:0010062	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of trichoblast fate specification	SoyBase	N/A	ISS
GO:0030154	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell differentiation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
KOG0483	KOG	Transcription factor HEX, contains HOX and HALZ domains	JGI		ISS
PTHR24325	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24325:SF193	Panther		JGI		ISS
PF00046	PFAM	Homeobox domain	JGI		ISS
PF01852	PFAM	START domain	JGI		ISS
UniRef100_D9ZJ21	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: HD domain class transcription factor n=1 Tax=Malus x domestica RepID=D9ZJ21_MALDO	SoyBase	E_val: 0	ISS
UniRef100_I1KV67	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KV67_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g21890

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g21890

Paralog	Evidence	Comments
Glyma07g02220	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g21890 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g204700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g21890

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g21890

Limit To All Plant Sequences

>Glyma08g21890.1   sequence type=CDS   gene model=Glyma08g21890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGTCAACATGTCCAACACGCCACCTCACACCAAAGACTTGTTTTCCTCTCCAGTTCTCTCTCTTAGCTTAGCTGGGATTTTCCGGTATGCTGGGGAGGCGGCGGAGACGTCCGGCATGGAGATGGCCAGCGATGAGGTCCGGCAAGAGGATACTGCTGATATTAGCAGCGACAACTCAGGACCCGTGAGATCCAGGTCAGAAGAAGATTTTGATTGTGATGATGTTCATGATGGTGATGACAAAGATAACGATGATAAGAATAGAAAGAAGAAGAGAAAGTATCACAGGCACACCACTGAACAGATAAGAGAAATGGAAGCGCTTTTCAAGGAATCACCGCATCCTGATGAAAAGCAGAGGCAAAAACTCAGCCAGCAACTTGGCCTTGCTCCAAGGCAAGTCAAGTTTTGGTTCCAAAATCGTCGAACCCAAATCAAGGCACTACAAGAGCGCCATGAAAACTCATTGTTGAAGACAGAATTAGACAAACTTAGGGAGGAAACTAAGGCCATGCGAGAAACCATAAACAAATCTTGTTGCCCCAATTGTGGCATGGTAACGGCTACCATAGATGCTTCCATGTCCACTGAAGAAAAACAACTTCTTATTGAAAATGCCAAACTCAAAGCTGAGGTAGAGAAGCTCCGAACAGCTTTAGGGAAATTCTCACCAAGGACAACGTCTCCTACTACATCTTCTGCTGGCCATGATGAAGAAGAGAATAGAAACTCTTTGGGTTTTTACAGTGTACTTTTCGGGCTCGACAAATCAAGGATAATGGATGTAGCAAACCGAGCAACGGAGGAGCTCATAAAGATGGCAACTATGGGGGAACCATTATGGGTTCGTAGCGTTGAAACAGGTCGCGAAATACTTAACTACGATGAATATGTGAAGGAGATGGCAGCTGAAAATTCGGGCAGTGAAAGGCCAAAGACATTCATCGAAGCCTCAAGAGAAACTGAGGTTGTTTTTATGGATCTTCCTCGGCTTCTCCAAAGTTTTCTAGACGTGAATCAATGGAAGGAAATGTTTCCGTGCTTAATATCAAAGGCTGTAACTGTTGATGTTATAAGCAATGGCGAAGGTTCTAACAGGAATGGTGCAGTGCAATTGATGTTTGCTGAGCTTCAAATGCTCACTCCTATGGTGCCCACCCGAGAAGTGTATTTTGTGAGGTGCTGCAAACAGTTGAGTGATGAACAGTGGGCAATAGTTGATGTCTCCATAGACAAAGTAGAAGACAACATTGATGCATCCCTTGTGAAATGTAGAAAACGCCCGTCTGGGTGTATTATTGAGGATAAGTCAAATGGCCATTGCAAGGTGATATGGGTGGAGCACTTGGAGTGCCAAAAGAGCACAATTCATACAATGTACCGAACTATTGTCAACAGTGGTCTAGCTTTTGGGGCAAGGCATTGGATAGCAACACTACAACTTCATTGTGAACGTTTGGTTTTCTACATGGCAACGAATGTTCCCATGAAGGATTCAACTGGTGTTGCCACGTTGGCTGGGAGGAAGAGCATTTTGAAGTTGGCACAAAGGATGACGTGGAGTTTCTGCCATGCAATTGGTGCATCAAGTTTTCATACATGGACCATGGTCACAAGTAAAACAGGAGAAGACATAAGGATTAGCTCTAGGAAGAACTTGAATGACCCAGGTGAACCTCTTGGGGTTATCTTGTCTGCCGTTTCTTCTGTGTGGCTTCCTGTCTCTACTAACGTGCTGTTCGATTTCTTGAGGGATGAAGCTCGTCGAAGTGAGTGGGATATCATGTCCAGTGGTGGGTCAGTTCAGTCCGTTGCAAATTTAGCTAAAGGAAAAGACCGAGGCAACGTTGTAAACATTCAAAAAATACAATCAAAAGATAACAGTGTGTGGATCTTGCAAGATAGCTGCACAAGTGCTTATGAGTCAATGGTGGTATATGCTCCTGTGGAATTTGCTGGTATACAAAGTGTGCTTACAGGATGTGATTCAAGTAATCTTGCTATATTGCCGTCAGGATTCTCAATTCTACCTGATGGGATTGAGGGAAGGCCATTGGTGATTTCGTCAAGGCAAGAAGAAAAATACACTGAAGGAGGCTCTTTGTTTACAATGGCATTCCAGATTCTTGTCAACCCTTCTCCAACAGTCAAGTTAACAACGGAGTCTGTGGAATCGGTCAATAATCTTGTGTCTTGTACATTGAGAAATATTAAAACAAGTTTGCAGTGTGAAGATGGTTAG

Predicted protein sequences of Glyma08g21890

Limit To All Plant Sequences

>Glyma08g21890.1   sequence type=predicted peptide   gene model=Glyma08g21890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVNMSNTPPHTKDLFSSPVLSLSLAGIFRYAGEAAETSGMEMASDEVRQEDTADISSDNSGPVRSRSEEDFDCDDVHDGDDKDNDDKNRKKKRKYHRHTTEQIREMEALFKESPHPDEKQRQKLSQQLGLAPRQVKFWFQNRRTQIKALQERHENSLLKTELDKLREETKAMRETINKSCCPNCGMVTATIDASMSTEEKQLLIENAKLKAEVEKLRTALGKFSPRTTSPTTSSAGHDEEENRNSLGFYSVLFGLDKSRIMDVANRATEELIKMATMGEPLWVRSVETGREILNYDEYVKEMAAENSGSERPKTFIEASRETEVVFMDLPRLLQSFLDVNQWKEMFPCLISKAVTVDVISNGEGSNRNGAVQLMFAELQMLTPMVPTREVYFVRCCKQLSDEQWAIVDVSIDKVEDNIDASLVKCRKRPSGCIIEDKSNGHCKVIWVEHLECQKSTIHTMYRTIVNSGLAFGARHWIATLQLHCERLVFYMATNVPMKDSTGVATLAGRKSILKLAQRMTWSFCHAIGASSFHTWTMVTSKTGEDIRISSRKNLNDPGEPLGVILSAVSSVWLPVSTNVLFDFLRDEARRSEWDIMSSGGSVQSVANLAKGKDRGNVVNIQKIQSKDNSVWILQDSCTSAYESMVVYAPVEFAGIQSVLTGCDSSNLAILPSGFSILPDGIEGRPLVISSRQEEKYTEGGSLFTMAFQILVNPSPTVKLTTESVESVNNLVSCTLRNIKTSLQCEDG*

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