Report for Sequence Feature Glyma08g21890
Feature Type: gene_model
Chromosome: Gm08
Start: 16659547
stop: 16665982
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g21890
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G79840 AT
Annotation by Michelle Graham. TAIR10: HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain | chr1:30037526-30041013 FORWARD LENGTH=747
SoyBase E_val: 0 ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0009888 GO-bp
Annotation by Michelle Graham. GO Biological Process: tissue development
SoyBase N/A ISS
GO:0009957 GO-bp
Annotation by Michelle Graham. GO Biological Process: epidermal cell fate specification
SoyBase N/A ISS
GO:0010062 GO-bp
Annotation by Michelle Graham. GO Biological Process: negative regulation of trichoblast fate specification
SoyBase N/A ISS
GO:0030154 GO-bp
Annotation by Michelle Graham. GO Biological Process: cell differentiation
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003677 GO-mf
Annotation by Michelle Graham. GO Molecular Function: DNA binding
SoyBase N/A ISS
GO:0003700 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity
SoyBase N/A ISS
GO:0043565 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding
SoyBase N/A ISS
KOG0483
KOG
Transcription factor HEX, contains HOX and HALZ domains
JGI ISS
PTHR24325 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24325:SF193 Panther
JGI ISS
PF00046 PFAM
Homeobox domain
JGI ISS
PF01852 PFAM
START domain
JGI ISS
UniRef100_D9ZJ21 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: HD domain class transcription factor n=1 Tax=Malus x domestica RepID=D9ZJ21_MALDO
SoyBase E_val: 0 ISS
UniRef100_I1KV67 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KV67_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g21890
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma08g21890
Paralog Evidence Comments
Glyma07g02220 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g21890 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g204700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g21890
Coding sequences of Glyma08g21890
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g21890.1 sequence type=CDS gene model=Glyma08g21890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGAGTCAACATGTCCAACACGCCACCTCACACCAAAGACTTGTTTTCCTCTCCAGTTCTCTCTCTTAGCTTAGCTGGGATTTTCCGGTATGCTGGGGAGGCGGCGGAGACGTCCGGCATGGAGATGGCCAGCGATGAGGTCCGGCAAGAGGATACTGCTGATATTAGCAGCGACAACTCAGGACCCGTGAGATCCAGGTCAGAAGAAGATTTTGATTGTGATGATGTTCATGATGGTGATGACAAAGATAACGATGATAAGAATAGAAAGAAGAAGAGAAAGTATCACAGGCACACCACTGAACAGATAAGAGAAATGGAAGCGCTTTTCAAGGAATCACCGCATCCTGATGAAAAGCAGAGGCAAAAACTCAGCCAGCAACTTGGCCTTGCTCCAAGGCAAGTCAAGTTTTGGTTCCAAAATCGTCGAACCCAAATCAAGGCACTACAAGAGCGCCATGAAAACTCATTGTTGAAGACAGAATTAGACAAACTTAGGGAGGAAACTAAGGCCATGCGAGAAACCATAAACAAATCTTGTTGCCCCAATTGTGGCATGGTAACGGCTACCATAGATGCTTCCATGTCCACTGAAGAAAAACAACTTCTTATTGAAAATGCCAAACTCAAAGCTGAGGTAGAGAAGCTCCGAACAGCTTTAGGGAAATTCTCACCAAGGACAACGTCTCCTACTACATCTTCTGCTGGCCATGATGAAGAAGAGAATAGAAACTCTTTGGGTTTTTACAGTGTACTTTTCGGGCTCGACAAATCAAGGATAATGGATGTAGCAAACCGAGCAACGGAGGAGCTCATAAAGATGGCAACTATGGGGGAACCATTATGGGTTCGTAGCGTTGAAACAGGTCGCGAAATACTTAACTACGATGAATATGTGAAGGAGATGGCAGCTGAAAATTCGGGCAGTGAAAGGCCAAAGACATTCATCGAAGCCTCAAGAGAAACTGAGGTTGTTTTTATGGATCTTCCTCGGCTTCTCCAAAGTTTTCTAGACGTGAATCAATGGAAGGAAATGTTTCCGTGCTTAATATCAAAGGCTGTAACTGTTGATGTTATAAGCAATGGCGAAGGTTCTAACAGGAATGGTGCAGTGCAATTGATGTTTGCTGAGCTTCAAATGCTCACTCCTATGGTGCCCACCCGAGAAGTGTATTTTGTGAGGTGCTGCAAACAGTTGAGTGATGAACAGTGGGCAATAGTTGATGTCTCCATAGACAAAGTAGAAGACAACATTGATGCATCCCTTGTGAAATGTAGAAAACGCCCGTCTGGGTGTATTATTGAGGATAAGTCAAATGGCCATTGCAAGGTGATATGGGTGGAGCACTTGGAGTGCCAAAAGAGCACAATTCATACAATGTACCGAACTATTGTCAACAGTGGTCTAGCTTTTGGGGCAAGGCATTGGATAGCAACACTACAACTTCATTGTGAACGTTTGGTTTTCTACATGGCAACGAATGTTCCCATGAAGGATTCAACTGGTGTTGCCACGTTGGCTGGGAGGAAGAGCATTTTGAAGTTGGCACAAAGGATGACGTGGAGTTTCTGCCATGCAATTGGTGCATCAAGTTTTCATACATGGACCATGGTCACAAGTAAAACAGGAGAAGACATAAGGATTAGCTCTAGGAAGAACTTGAATGACCCAGGTGAACCTCTTGGGGTTATCTTGTCTGCCGTTTCTTCTGTGTGGCTTCCTGTCTCTACTAACGTGCTGTTCGATTTCTTGAGGGATGAAGCTCGTCGAAGTGAGTGGGATATCATGTCCAGTGGTGGGTCAGTTCAGTCCGTTGCAAATTTAGCTAAAGGAAAAGACCGAGGCAACGTTGTAAACATTCAAAAAATACAATCAAAAGATAACAGTGTGTGGATCTTGCAAGATAGCTGCACAAGTGCTTATGAGTCAATGGTGGTATATGCTCCTGTGGAATTTGCTGGTATACAAAGTGTGCTTACAGGATGTGATTCAAGTAATCTTGCTATATTGCCGTCAGGATTCTCAATTCTACCTGATGGGATTGAGGGAAGGCCATTGGTGATTTCGTCAAGGCAAGAAGAAAAATACACTGAAGGAGGCTCTTTGTTTACAATGGCATTCCAGATTCTTGTCAACCCTTCTCCAACAGTCAAGTTAACAACGGAGTCTGTGGAATCGGTCAATAATCTTGTGTCTTGTACATTGAGAAATATTAAAACAAGTTTGCAGTGTGAAGATGGTTAG
Predicted protein sequences of Glyma08g21890
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g21890.1 sequence type=predicted peptide gene model=Glyma08g21890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGVNMSNTPPHTKDLFSSPVLSLSLAGIFRYAGEAAETSGMEMASDEVRQEDTADISSDNSGPVRSRSEEDFDCDDVHDGDDKDNDDKNRKKKRKYHRHTTEQIREMEALFKESPHPDEKQRQKLSQQLGLAPRQVKFWFQNRRTQIKALQERHENSLLKTELDKLREETKAMRETINKSCCPNCGMVTATIDASMSTEEKQLLIENAKLKAEVEKLRTALGKFSPRTTSPTTSSAGHDEEENRNSLGFYSVLFGLDKSRIMDVANRATEELIKMATMGEPLWVRSVETGREILNYDEYVKEMAAENSGSERPKTFIEASRETEVVFMDLPRLLQSFLDVNQWKEMFPCLISKAVTVDVISNGEGSNRNGAVQLMFAELQMLTPMVPTREVYFVRCCKQLSDEQWAIVDVSIDKVEDNIDASLVKCRKRPSGCIIEDKSNGHCKVIWVEHLECQKSTIHTMYRTIVNSGLAFGARHWIATLQLHCERLVFYMATNVPMKDSTGVATLAGRKSILKLAQRMTWSFCHAIGASSFHTWTMVTSKTGEDIRISSRKNLNDPGEPLGVILSAVSSVWLPVSTNVLFDFLRDEARRSEWDIMSSGGSVQSVANLAKGKDRGNVVNIQKIQSKDNSVWILQDSCTSAYESMVVYAPVEFAGIQSVLTGCDSSNLAILPSGFSILPDGIEGRPLVISSRQEEKYTEGGSLFTMAFQILVNPSPTVKLTTESVESVNNLVSCTLRNIKTSLQCEDG*