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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G52220 | AT | Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: photosystem I P subunit (TAIR:AT2G46820.2); Has 291 Blast hits to 291 proteins in 50 species: Archae - 0; Bacteria - 90; Metazoa - 0; Fungi - 0; Plants - 200; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr1:19453770-19454605 REVER | SoyBase | E_val: 6.00E-38 | ISS |
| GO:0006364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: rRNA processing | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009657 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plastid organization | SoyBase | N/A | ISS |
| GO:0010103 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis | SoyBase | N/A | ISS |
| GO:0010207 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photosystem II assembly | SoyBase | N/A | ISS |
| GO:0019684 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction | SoyBase | N/A | ISS |
| GO:0035304 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation | SoyBase | N/A | ISS |
| GO:0043085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of catalytic activity | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009535 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_B9RQK0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Thylakoid membrane phosphoprotein 14 kDa, chloroplast, putative n=1 Tax=Ricinus communis RepID=B9RQK0_RICCO | SoyBase | E_val: 2.00E-26 | ISS |
| UniRef100_I1KV65 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KV65_SOYBN | SoyBase | E_val: 2.00E-116 | ISS |
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Glyma08g21880 not represented in the dataset |
Glyma08g21880 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g02210 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g204600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g21880.2 sequence type=transcript gene model=Glyma08g21880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAAAAAGAGATTGTATTTTATTTTTTTGTGGTGCACATTCCTTTCATTGGCTGTGTCTCACTCATCCTTTGCACTAGAGTAATACTACATACTACATACAATACAAGGCAATCTTACTTTTGATTTCTGAAATCTGATTATCATTGGAGGATCTGATTTCTGACATCTGATTCTGATTATCATTGGAGGGAATCTCAACCCAAAGTTTAGTTTTTTATTTTTATTATTATTATTATTGTTGTTATTTCTGCCACAACATTTAGGGGTGCATTGCAAATGGCTTCCATTGTTGCAAGCTTGCCGCCACCATTGCTGCTCCCTGCTAGAAAATATCATCCGGGCAACTTCCCAAGTTCCCCTTTTTCTCTTCTTTCAGGGAGACGGAATCATGTTTCTTTTGTTGTGAAGGCTTCTGGAGAAAGTTCTGAATCTTCAACTACCCTTACTGTTTTTAAGTCTGTTCAGAATGTTTGGGATCAACCTGAGGACCGTCTGGGACTTATTGGTTTGGGATTTGCAGCCATAGCAGCATTTTGGGCATCAACAAATTTGATTGCGGCCATTGACAAATTGCCAGTTTTCCCAACAGTACTGGAATTAATTGGAATATTTTACTCTGTGTGGTTTACTTATCGCTATCTCATATTCAAACCTGACCGGGAAGAGCTTTTTCAAATCTTGAACAAGTCAGCATCAGATATCTTGGGCCAGTAAGATGTGCGGCCGAAATGCTATGCTAGATTGGGAGGAAAAGGTGAAAGGGGCTTTGGTTGTCTTCACTCCAATCGTAAATGTCAATGCAAGGATTATTTATTTGGTTTAAGACCACTATATTACATCAATGAGTTAAAGCTTACTTCTTTTGTGTTGGTTTCTTTGTATAAAATTTTAACTGAGTTCCCTTGTGCATCAAACTATCAAGAGTAAAACTAGCCTAAATAATGCCCAGAACATAACTGCTAAGTGCCAACTTATATACTGCCATAAATCTTTACAAAATCATTGTATGTGTATTCTCATAGTAAAAAAATGCTAATGCTTTGGGAAATTTTGTATAGTCAATCTCTTTAGACCAAGGCCCCGAGGAATGCTTTTGATTAAGATTAAAAATGGGACTCATTCTCATTTTATGTAATGTCCCAAAGGAACATATGAAAAGAGAAGGGCGCAAACATTGAATATCCCATCTTACATGTATTATTCTTTGAATCATTTATCATGCTATACCTTTGTGCTCTTGTAC
>Glyma08g21880.1 sequence type=CDS gene model=Glyma08g21880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCCATTGTTGCAAGCTTGCCGCCACCATTGCTGCTCCCTGCTAGAAAATATCATCCGGGCAACTTCCCAAGTTCCCCTTTTTCTCTTCTTTCAGGGAGACGGAATCATGTTTCTTTTGTTGTGAAGGCTTCTGGAGAAAGTTCTGAATCTTCAACTACCCTTACTGTTTTTAAGTCTGTTCAGAATGTTTGGGATCAACCTGAGGACCGTCTGGGACTTATTGGTTTGGGATTTGCAGCCATAGCAGCATTTTGGGCATCAACAAATTTGATTGCGGCCATTGACAAATTGCCAGTTTTCCCAACAGTACTGGAATTAATTGGAATATTTTACTCTGTGGTAAGTGCTGTGCTGCATAATTGGTGTGTGTTTCTATTAATGCCAATTATGTTTCTATTAACTTTTCCTTTCAATTTCAGTGGTTTACTTATCGCTATCTCATATTCAAACCTGACCGGTAAGCATGTTGGTCCCCTTTATTCTTATTTCCACAAGTTTGTTTAA >Glyma08g21880.2 sequence type=CDS gene model=Glyma08g21880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCCATTGTTGCAAGCTTGCCGCCACCATTGCTGCTCCCTGCTAGAAAATATCATCCGGGCAACTTCCCAAGTTCCCCTTTTTCTCTTCTTTCAGGGAGACGGAATCATGTTTCTTTTGTTGTGAAGGCTTCTGGAGAAAGTTCTGAATCTTCAACTACCCTTACTGTTTTTAAGTCTGTTCAGAATGTTTGGGATCAACCTGAGGACCGTCTGGGACTTATTGGTTTGGGATTTGCAGCCATAGCAGCATTTTGGGCATCAACAAATTTGATTGCGGCCATTGACAAATTGCCAGTTTTCCCAACAGTACTGGAATTAATTGGAATATTTTACTCTGTGTGGTTTACTTATCGCTATCTCATATTCAAACCTGACCGGGAAGAGCTTTTTCAAATCTTGAACAAGTCAGCATCAGATATCTTGGGCCAGTAA
>Glyma08g21880.1 sequence type=predicted peptide gene model=Glyma08g21880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASIVASLPPPLLLPARKYHPGNFPSSPFSLLSGRRNHVSFVVKASGESSESSTTLTVFKSVQNVWDQPEDRLGLIGLGFAAIAAFWASTNLIAAIDKLPVFPTVLELIGIFYSVVSAVLHNWCVFLLMPIMFLLTFPFNFSGLLIAISYSNLTGKHVGPLYSYFHKFV* >Glyma08g21880.2 sequence type=predicted peptide gene model=Glyma08g21880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASIVASLPPPLLLPARKYHPGNFPSSPFSLLSGRRNHVSFVVKASGESSESSTTLTVFKSVQNVWDQPEDRLGLIGLGFAAIAAFWASTNLIAAIDKLPVFPTVLELIGIFYSVWFTYRYLIFKPDREELFQILNKSASDILGQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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