Glyma08g21860 - SoyBase

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Report for Sequence Feature Glyma08g21860

Feature Type:	gene_model
Chromosome:	Gm08
Start:	16637511
stop:	16645741
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g21860

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G79820	AT	Annotation by Michelle Graham. TAIR10: Major facilitator superfamily protein \| chr1:30022581-30026771 REVERSE LENGTH=495	SoyBase	E_val: 0	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0009855	GO-bp	Annotation by Michelle Graham. GO Biological Process: determination of bilateral symmetry	SoyBase	N/A	ISS
GO:0009887	GO-bp	Annotation by Michelle Graham. GO Biological Process: organ morphogenesis	SoyBase	N/A	ISS
GO:0010051	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylem and phloem pattern formation	SoyBase	N/A	ISS
GO:0048439	GO-bp	Annotation by Michelle Graham. GO Biological Process: flower morphogenesis	SoyBase	N/A	ISS
GO:0048519	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of biological process	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
GO:0005351	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sugar:hydrogen symporter activity	SoyBase	N/A	ISS
GO:0015144	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carbohydrate transmembrane transporter activity	SoyBase	N/A	ISS
GO:0022857	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transmembrane transporter activity	SoyBase	N/A	ISS
KOG0254	KOG	Predicted transporter (major facilitator superfamily)	JGI		ISS
PTHR24063	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24063:SF84	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00083	PFAM	Sugar (and other) transporter	JGI		ISS
UniRef100_I1KV64	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KV64_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2V4B9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Probable plastidic glucose transporter 3 n=3 Tax=Arabidopsis thaliana RepID=PLST3_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g21860

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g21860 not represented in the dataset	Glyma08g21860 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g21860

Paralog	Evidence	Comments
Glyma07g02200	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g21860 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g204500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g21860

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g21860

Limit To All Plant Sequences

>Glyma08g21860.1   sequence type=CDS   gene model=Glyma08g21860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGGGGACGGCAGCGAGTGTCATCAAGGGAACACATACTTGGCCACGATAAAGATGAAAATTTAGCTTCAGTTCGTATACCAAATGCCAAACCTTGTTGGCGGCGGTCTTTGCGGCATGTAATTGTGGCTTCTCTTTCTTCATTCTTGTATGGATACCATATTGGAGTAGTCAATGAAACCTTAGAGAGCATTTCTATAGATCTTGGCTTTAGTGGGAATACCATGGCTGAGGGTCTTGTAGTAAGTATATGCTTAGGAGGTGCTTTTGTTGGATCTCTGTTCAGTGGATGGATTGCAGATGGTGTTGGGCGTAGAAGAAGTTTCCAGTTGTGTGCTTTGCCTATGATAATTGGGGCTGGAATGAGTGCAACAGCAAAAACTCTTTGGGGCATGCTTTTGGGACGGTTATTTGTTGGTACTGGAATGGGACTTGGTCCACCTGTTGCAGCTCTTTATGTGGCTGAGGTCTCACCTCCAGCGGTACGAGGTGCTTTTGGGGCCTTAACGCAAATTGCAACATGTCTTGGACTCATGGGTTCTCTCTTTATTGGAATTCCAGCCAAGGATATAGTTGGTTGGTGGCGGATTTGTTTCTGGGTATCTGTCATTCCTGCTACAATGCTTGCCCTTTTTATGGAGATCTGTGCAGAGAGTCCTCATTGGCTTTTCAAGAGAGGAAGAACCATTGAAGCTGAAGCTTCATTTGAGAAGCTCTTGGGAGGAGTACATGTGAAACCTGCAATGAATGAACTTTCAAAGTCTGACAGAGGCGATGGATCTGATTCAGTAAAACTTTCAGAATTAATCTGTGGCCGCTATTTCAGAGTGATGTTCATTGGATCTACACTTTTTGCGTTGCAGCAGCTATCTGGCATAAATGCTGTTTTCTATTTCTCTTCAACTGTCTTTGAAAGTTTTGGTGTACCATCTGCTATTGCAAACACATGTGTAGGAGTTTGCAATTTATTGGGGTCAGTAGTTGCAATGATTCTGATGGATAAACTTGGAAGGAAAGTGCTGCTCCTGGGTAGCTTTCTGGGCATGGGGTTATCAATGGGTGTACAAGTCATCGCTGCAAGTTCTTTTGCATCAGGATTTGGATCAATGTATTTATCTGTTGGTGGCATGTTACTGTTTGTGCTGTCATTTGCTTTCGGCGCTGGTCCAGTTCCTTGTCTTATCATGTCTGAAATACTACCCAGCAATATCAGAGCAAAGGCAATGGCAATTTGCCTGGCTGTGCATTGGGTGATAAACTTCTTCGTGGGTCTATTTTTTTTGCGCTTGCTGGAGCTAATTGGGGCGCAACTCCTGTATAGTATTTTTGGGTTTTGTTGTTTGATAGCGGTGGTTTTTGTGAAGAAAAATATTCTGGAAACAAAAGGGAAGTCACTTCAGGAAATTGAAATTGCACTTCTTGCACAAGAAGCAAACTAA

Predicted protein sequences of Glyma08g21860

Limit To All Plant Sequences

>Glyma08g21860.1   sequence type=predicted peptide   gene model=Glyma08g21860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRGRQRVSSREHILGHDKDENLASVRIPNAKPCWRRSLRHVIVASLSSFLYGYHIGVVNETLESISIDLGFSGNTMAEGLVVSICLGGAFVGSLFSGWIADGVGRRRSFQLCALPMIIGAGMSATAKTLWGMLLGRLFVGTGMGLGPPVAALYVAEVSPPAVRGAFGALTQIATCLGLMGSLFIGIPAKDIVGWWRICFWVSVIPATMLALFMEICAESPHWLFKRGRTIEAEASFEKLLGGVHVKPAMNELSKSDRGDGSDSVKLSELICGRYFRVMFIGSTLFALQQLSGINAVFYFSSTVFESFGVPSAIANTCVGVCNLLGSVVAMILMDKLGRKVLLLGSFLGMGLSMGVQVIAASSFASGFGSMYLSVGGMLLFVLSFAFGAGPVPCLIMSEILPSNIRAKAMAICLAVHWVINFFVGLFFLRLLELIGAQLLYSIFGFCCLIAVVFVKKNILETKGKSLQEIEIALLAQEAN*

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