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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G16170 | AT | Annotation by Michelle Graham. TAIR10: AMP-dependent synthetase and ligase family protein | chr3:5476490-5480128 FORWARD LENGTH=544 | SoyBase | E_val: 0 | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0090410 | GO-bp | Annotation by Michelle Graham. GO Biological Process: malonate catabolic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0016208 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: AMP binding | SoyBase | N/A | ISS |
| GO:0090409 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: malonyl-CoA synthetase activity | SoyBase | N/A | ISS |
| KOG1176 | KOG | Acyl-CoA synthetase | JGI | ISS | |
| PTHR24095 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24095:SF48 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00501 | PFAM | AMP-binding enzyme | JGI | ISS | |
| UniRef100_H9A1W2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Acyl-activating enzyme 10 n=1 Tax=Cannabis sativa RepID=H9A1W2_CANSA | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KV61 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KV61_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g21840 not represented in the dataset |
Glyma08g21840 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g02180 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g204300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g21840.2 sequence type=transcript gene model=Glyma08g21840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TCCTTTTTTTGTTGGTGTACTAAGATAATTCCTACCACACAAGAAGAAACCTATCTTCAAAAAGGCAAAAACATAAATACAAAATGTGGTAGTAACAAGTTACAAGCTGTGACTCACAAACATCCTATTACAATTAAGTTGTCCTGAACCCTAAGAAACAATAATCAAGAGGCCCCTCGAAACAGAAGGAACCCAGAAAAAAAAAACAGTATTGCACCATTGGCATTGGTATTGCAATTGGAATTGAATAGGCATTAGCATTATAATAGCCCCCCGAAACTGAAAGCCATATTTGACTGAAAGAAAGAAAGACAGACAAAATTAGAGGTGCAAAAAGAGGAACGTGCGAAAAATAGAATTAGAGTTTTGCAGTTTCCACCTAACTCCACTGCTCAATTAGTTGGTTACATTACCATATCTGCCACCCACCTAAATGAGTTGCTCATTGAAAGCTTTCGACAAACACCTTACTCTCCTTCCTCAACGTACTTTTTCTTCTTCTTCCCATGCCTTCATAGCTTCCTCTTCCTTCCCTCTTTTCCCGCACCTTGCTTCCTACCCCACCTCTTTCTCTCAGTTTCGTCCACTCTCTTCATCTGCACCTGCTACATTAATGGAGGTGGTCAAAGCAATTGCTAAGCACGAACCTACAGTTCCTGAGAGTGTTGCTATCAGAGCTGATCAGAAGAGTTATAGTTACAAGCAACTTGTCTCATCGGCACAGAAGATATCCAATCTCTTGTGTGGCAGTGATGCACAGACAGGAAATCTCGGTGGAGCTCGAGTAGGAATTGTAGCCAAACCCTCCGCTGAATTTGTTGCTGGAATACTTGGGATTTGGCTTAGTGGAGGTGTTGCTGTTCCGCTTGCAACCAGCTATCCAGAAGTAGAGCTCTTGTATGTGACTAATAATTCGGATGTATCTGCAATACTGAGTACTGAAGATCATAGTGAAATAATGCAAAGCATAGCCAATAAAAGCTCTTCTCAGTTTTTTCATCTTCCACTTGTTCTCAACAAGTCTTCTGAGAAAAGCAGAGATGACCATTCGCAGAATGGGGGAATTCATACAGATAAAATTTTGTTGGATAATTTTGGAAGATTAAGTGAAGATCCAGCACTGATTTTGTACACTAGTGGGACTACAGGTAAACCTAAGGGAGTTGTTCATACACACAAAAGCATCATTTCCCAGGTCCAAACTTTGACAAAAGCATGGGAGTACACATCTGCTGATCAGTTTCTGCATTGTCTACCACTACATCATGTTCATGGGTTTTTCAATGGTTTAATGGCCCCTCTCTATGCAGGCTCCACGGTTGAGTTTTTGCCAAAATTTAGTGTGAGAGGAGTTTGGCAGAGATGGCGTGAGTCATATCCAACTGATGGTTCTAAGGCTGAAGATGCTATAACTGTGTTCACTGGAGTTCCAACTATCTATGCCCGATTGATACAAGGTTATCATGCAATGGATCCTGAGCTACAAGCTGCTTCAGTATCTGCTGCAAAGAACTTGCGTCTTATGATGTGTGGGTCCTCTGCACTTCCACTACCTGTTATGCAAGAATGGGAAGCCATCACTGGGCATCGCTTATTGGAACGATATGGCATGACTGAATTTGTTATGGCATTGTCGAATCCATTAAAAGGTGAGCGCAAACCTGGAACTGTTGGCAAACCATTTCCCGGTATACAGGTCAAGATTATTACAGATGAAGAGAGTGTGAATGAAAATACTGGAATGGGTGAGCTTTGCTTTAAAAGCCCTTCGTTGTTTAAAGAATATTGGAAACTTCCTGAGGCAACAAAGGAATCATTTACTGATGATGGATTCTTCAAGACTGGAGATGCAGTTACTACAGATGAAGATGGATATTTCATCATTCTAGGACCATCCGGCTGTCTCAGAATGTTGCGTTTTAGGCCTACCAGACAAAGACTATGGAGAGATTGTTGGTGCAATCGTTGTGCCACAGGCTGATGTTAAACTGAAACGAGATCAAGAATCAAAGCCTGTTCTAAGCCTAGAAGAATTATCCACCTGGGCCAAAGACAAAATTGCACCTTACAAGATTCCAACTCAACTAATCGTGTGGGATAAACTCCCTCGCAATGCCATGGGGAAGGTAAATAAAAAAGAGCTGAAGAAGCTGCTTACCATTTGAGCATTTATTCACTAGGCAAAGTTAATTTATTGAAAAATCAGTTTTAGATGGTGGCAATCTCAAATAAAATTGCACCAATTATTTAGTGAAATAGAAACCTTTATATTCTGACATTTATTAAGCTCAATAAGTTTGAGCATATTATTAGGGGGAAGATAAAGGAGAAAATATAGCATAAGTTTGGCATTTTAGCTGTATGATGGTGATTTGATTGAATGTATTTAATGAGAAATATTTATTATATTGAAAATGAAAAAATATTTAATATTTACTTCCTTTAGTAATTAAAAATATTTAATAC
>Glyma08g21840.1 sequence type=CDS gene model=Glyma08g21840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTTGCTCATTGAAAGCTTTCGACAAACACCTTACTCTCCTTCCTCAACGTACTTTTTCTTCTTCTTCCCATGCCTTCATAGCTTCCTCTTCCTTCCCTCTTTTCCCGCACCTTGCTTCCTACCCCACCTCTTTCTCTCAGTTTCGTCCACTCTCTTCATCTGCACCTGCTACATTAATGGAGGTGGTCAAAGCAATTGCTAAGCACGAACCTACAGTTCCTGAGAGTGTTGCTATCAGAGCTGATCAGAAGAGTTATAGTTACAAGCAACTTGTCTCATCGGCACAGAAGATATCCAATCTCTTGTGTGGCAGTGATGCACAGACAGGAAATCTCGGTGGAGCTCGAGTAGGAATTGTAGCCAAACCCTCCGCTGAATTTGTTGCTGGAATACTTGGGATTTGGCTTAGTGGAGGTGTTGCTGTTCCGCTTGCAACCAGCTATCCAGAAGTAGAGCTCTTGTATGTGACTAATAATTCGGATGTATCTGCAATACTGAGTACTGAAGATCATAGTGAAATAATGCAAAGCATAGCCAATAAAAGCTCTTCTCAGTTTTTTCATCTTCCACTTGTTCTCAACAAGTCTTCTGAGAAAAGCAGAGATGACCATTCGCAGAATGGGGGAATTCATACAGATAAAATTTTGTTGGATAATTTTGGAAGATTAAGTGAAGATCCAGCACTGATTTTGTACACTAGTGGGACTACAGGTAAACCTAAGGGAGTTGTTCATACACACAAAAGCATCATTTCCCAGGTCCAAACTTTGACAAAAGCATGGGAGTACACATCTGCTGATCAGTTTCTGCATTGTCTACCACTACATCATGTTCATGGGTTTTTCAATGGTTTAATGGCCCCTCTCTATGCAGGCTCCACGGTTGAGTTTTTGCCAAAATTTAGTGTGAGAGGAGTTTGGCAGAGATGGCGTGAGTCATATCCAACTGATGGTTCTAAGGCTGAAGATGCTATAACTGTGTTCACTGGAGTTCCAACTATCTATGCCCGATTGATACAAGGTTATCATGCAATGGATCCTGAGCTACAAGCTGCTTCAGTATCTGCTGCAAAGAACTTGCGTCTTATGATGTGTGGGTCCTCTGCACTTCCACTACCTGTTATGCAAGAATGGGAAGCCATCACTGGGCATCGCTTATTGGAACGATATGGCATGACTGAATTTGTTATGGCATTGTCGAATCCATTAAAAGGTGAGCGCAAACCTGGAACTGTTGGCAAACCATTTCCCGGTATACAGGTCAAGATTATTACAGATGAAGAGAGTGTGAATGAAAATACTGGAATGGGTGAGCTTTGCTTTAAAAGCCCTTCGTTGTTTAAAGAATATTGGAAACTTCCTGAGGCAACAAAGGAATCATTTACTGATGATGGATTCTTCAAGACTGGAGATGCAGTTACTACAGATGAAGATGGATATTTCATCATTCTAGGACGTAATAATGCTGATATAATCAAGGCTGGTGGATATAAGCTTTCTGCATTAGAAATTGAATCAGTTATAATAGAGCATCCGGCTGTCTCAGAATGTTGCGTTTTAGGCCTACCAGACAAAGACTATGGAGAGATTGTTGGTGCAATCGTTGTGCCACAGGCTGATGTTAAACTGAAACGAGATCAAGAATCAAAGCCTGTTCTAAGCCTAGAAGAATTATCCACCTGGGCCAAAGACAAAATTGCACCTTACAAGATTCCAACTCAACTAATCGTGTGGGATAAACTCCCTCGCAATGCCATGGGGAAGGTAAATAAAAAAGAGCTGAAGAAGCTGCTTACCATTTGA >Glyma08g21840.2 sequence type=CDS gene model=Glyma08g21840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTTGCTCATTGAAAGCTTTCGACAAACACCTTACTCTCCTTCCTCAACGTACTTTTTCTTCTTCTTCCCATGCCTTCATAGCTTCCTCTTCCTTCCCTCTTTTCCCGCACCTTGCTTCCTACCCCACCTCTTTCTCTCAGTTTCGTCCACTCTCTTCATCTGCACCTGCTACATTAATGGAGGTGGTCAAAGCAATTGCTAAGCACGAACCTACAGTTCCTGAGAGTGTTGCTATCAGAGCTGATCAGAAGAGTTATAGTTACAAGCAACTTGTCTCATCGGCACAGAAGATATCCAATCTCTTGTGTGGCAGTGATGCACAGACAGGAAATCTCGGTGGAGCTCGAGTAGGAATTGTAGCCAAACCCTCCGCTGAATTTGTTGCTGGAATACTTGGGATTTGGCTTAGTGGAGGTGTTGCTGTTCCGCTTGCAACCAGCTATCCAGAAGTAGAGCTCTTGTATGTGACTAATAATTCGGATGTATCTGCAATACTGAGTACTGAAGATCATAGTGAAATAATGCAAAGCATAGCCAATAAAAGCTCTTCTCAGTTTTTTCATCTTCCACTTGTTCTCAACAAGTCTTCTGAGAAAAGCAGAGATGACCATTCGCAGAATGGGGGAATTCATACAGATAAAATTTTGTTGGATAATTTTGGAAGATTAAGTGAAGATCCAGCACTGATTTTGTACACTAGTGGGACTACAGGTAAACCTAAGGGAGTTGTTCATACACACAAAAGCATCATTTCCCAGGTCCAAACTTTGACAAAAGCATGGGAGTACACATCTGCTGATCAGTTTCTGCATTGTCTACCACTACATCATGTTCATGGGTTTTTCAATGGTTTAATGGCCCCTCTCTATGCAGGCTCCACGGTTGAGTTTTTGCCAAAATTTAGTGTGAGAGGAGTTTGGCAGAGATGGCGTGAGTCATATCCAACTGATGGTTCTAAGGCTGAAGATGCTATAACTGTGTTCACTGGAGTTCCAACTATCTATGCCCGATTGATACAAGGTTATCATGCAATGGATCCTGAGCTACAAGCTGCTTCAGTATCTGCTGCAAAGAACTTGCGTCTTATGATGTGTGGGTCCTCTGCACTTCCACTACCTGTTATGCAAGAATGGGAAGCCATCACTGGGCATCGCTTATTGGAACGATATGGCATGACTGAATTTGTTATGGCATTGTCGAATCCATTAAAAGGTGAGCGCAAACCTGGAACTGTTGGCAAACCATTTCCCGGTATACAGGTCAAGATTATTACAGATGAAGAGAGTGTGAATGAAAATACTGGAATGGGTGAGCTTTGCTTTAAAAGCCCTTCGTTGTTTAAAGAATATTGGAAACTTCCTGAGGCAACAAAGGAATCATTTACTGATGATGGATTCTTCAAGACTGGAGATGCAGTTACTACAGATGAAGATGGATATTTCATCATTCTAGGACCATCCGGCTGTCTCAGAATGTTGCGTTTTAGGCCTACCAGACAAAGACTATGGAGAGATTGTTGGTGCAATCGTTGTGCCACAGGCTGA
>Glyma08g21840.1 sequence type=predicted peptide gene model=Glyma08g21840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSCSLKAFDKHLTLLPQRTFSSSSHAFIASSSFPLFPHLASYPTSFSQFRPLSSSAPATLMEVVKAIAKHEPTVPESVAIRADQKSYSYKQLVSSAQKISNLLCGSDAQTGNLGGARVGIVAKPSAEFVAGILGIWLSGGVAVPLATSYPEVELLYVTNNSDVSAILSTEDHSEIMQSIANKSSSQFFHLPLVLNKSSEKSRDDHSQNGGIHTDKILLDNFGRLSEDPALILYTSGTTGKPKGVVHTHKSIISQVQTLTKAWEYTSADQFLHCLPLHHVHGFFNGLMAPLYAGSTVEFLPKFSVRGVWQRWRESYPTDGSKAEDAITVFTGVPTIYARLIQGYHAMDPELQAASVSAAKNLRLMMCGSSALPLPVMQEWEAITGHRLLERYGMTEFVMALSNPLKGERKPGTVGKPFPGIQVKIITDEESVNENTGMGELCFKSPSLFKEYWKLPEATKESFTDDGFFKTGDAVTTDEDGYFIILGRNNADIIKAGGYKLSALEIESVIIEHPAVSECCVLGLPDKDYGEIVGAIVVPQADVKLKRDQESKPVLSLEELSTWAKDKIAPYKIPTQLIVWDKLPRNAMGKVNKKELKKLLTI* >Glyma08g21840.2 sequence type=predicted peptide gene model=Glyma08g21840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSCSLKAFDKHLTLLPQRTFSSSSHAFIASSSFPLFPHLASYPTSFSQFRPLSSSAPATLMEVVKAIAKHEPTVPESVAIRADQKSYSYKQLVSSAQKISNLLCGSDAQTGNLGGARVGIVAKPSAEFVAGILGIWLSGGVAVPLATSYPEVELLYVTNNSDVSAILSTEDHSEIMQSIANKSSSQFFHLPLVLNKSSEKSRDDHSQNGGIHTDKILLDNFGRLSEDPALILYTSGTTGKPKGVVHTHKSIISQVQTLTKAWEYTSADQFLHCLPLHHVHGFFNGLMAPLYAGSTVEFLPKFSVRGVWQRWRESYPTDGSKAEDAITVFTGVPTIYARLIQGYHAMDPELQAASVSAAKNLRLMMCGSSALPLPVMQEWEAITGHRLLERYGMTEFVMALSNPLKGERKPGTVGKPFPGIQVKIITDEESVNENTGMGELCFKSPSLFKEYWKLPEATKESFTDDGFFKTGDAVTTDEDGYFIILGPSGCLRMLRFRPTRQRLWRDCWCNRCATG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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