SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G52190 | AT | Annotation by Michelle Graham. TAIR10: Major facilitator superfamily protein | chr1:19434671-19438673 FORWARD LENGTH=607 | SoyBase | E_val: 0 | ISS |
| GO:0006857 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oligopeptide transport | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0005215 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transporter activity | SoyBase | N/A | ISS |
| KOG1237 | KOG | H+/oligopeptide symporter | JGI | ISS | |
| PTHR11654 | Panther | OLIGOPEPTIDE TRANSPORTER-RELATED | JGI | ISS | |
| PTHR11654:SF57 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00854 | PFAM | POT family | JGI | ISS | |
| UniRef100_Q2HU48 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: TGF-beta receptor, type I/II extracellular region n=1 Tax=Medicago truncatula RepID=Q2HU48_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002338CA2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002338CA2 related cluster n=1 Tax=unknown RepID=UPI0002338CA2 | SoyBase | E_val: 0 | ISS |
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Glyma08g21810 not represented in the dataset |
Glyma08g21810 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g02150 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g204000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g21810.2 sequence type=transcript gene model=Glyma08g21810 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AGAGATAAATAAGCTATCCTGAATCCTGATGCATGAAATACAAGACAATCTTAACATTTTTTATATTTTTAATGTACTAATAGTCTAACACTAAATACAAACCTGTTTCACATTCTTTTCTGTTATCTGTAAAACTTGATCAGACTTGAGGGCTACAAGACATTCAAAATAATAAAGTTAAAATGAGTTAATTTTATTAAAACTTTATCATTTTGGTAACAGGGAATGGCACTCTTGTGTCTAACAGCGATGATCCCACAGTCTCGGCCTCCTCCTTGCAACCCTGCAACTGAAAGATGTAAACCAGCAACAGCTGGCCAAATGGCAATGTTAATCTCTTCCTTTGCTCTCATGTCGATTGGAAATGGTGGCCTTTCATGCTCCATCGCATTTGGCGCAGACCAGGTGAATAAAAAAGATAACCCCAACAACCAGAGGGCCTTAGAAACATTTTTCAGCTGGTATTATGCTTCTACAGCTTTTTCTGTCATAATTGCCCTCACAGTCATAGTATATATCCAAGATCATTTTGGATGGAAAGTAGGTTTTGGAGTTCCAGCAGCACTTATGTTCATGTCCACTTTCTTCTTCTTTCTTGCTTCTCCGCTTTATGTAAAGAATAAAATACAAGGCAGCTTAATCACTGGCTTAGCACAAGTAATTGTCGTGGCCTATAAGAACCGGAAGCTTCCTTTACCACCTAGGAACTCAGCTGAAATGTACCATCATAGGAAGGACTCTGATCTTGTTGTTCCTACTGACAAACTAAGGTTTCTGAATAAAGCTTGCATCATCAAAGATATAGCCTCTGATGGATCAGCTTCAAATCCGTGGAGTCTCTGCACAATAGATCAAGTGGAAGAACTAAAAGCTATTATTAAAGTTATTCCACTGTGGTCTACAGGGATCATGATGTCAGTTAACATTGGAGGCTCGTTTGGAATACTGCAAGCTAAATCCCTCAACAGACATATCACTTCACACTTTGAAATTCCAGCAGGTTCTTTTTCTGTAGTAATCGTATTTATGGTATTCATATGGGTGGCTCTTTATGATCGTGTCATTATTCCTATAGCATCAAAGCTCAGAGGCAAACCAGTTAGGATCAGTGCCAAGAGAAGAATGGGAATTGGGTTGGTTTTCTCTTTTCTCCACTTGGCAACTGCAGCTATTGTGGAGAATACAAGGCGAAGGAGAGCAATCAGGGAGGGACATATTGATGACACAAATGCAGTGTTGAATATGTCTGCAATGTGGCTTGTTCCTCAACTTTGCTTGTCAGGCATGGCTGAAGCATTCAATGCTATAGGCCAAAATGAGTTTTATTACACTGAGTTTCCAAGAACTATGTCAAGTATTGCTGCTTGCCTTTTTGGACTTGGAATGGCTGCAGGAAATGTGTTATCTAGTTTGATATTCAGCATCGTGGAAAATGTTACTTCAAGGGGAGGAAAGCAAGGATGGGTTTTAGATAATATTAACAAGGGTAGTTATGACAGGTACTACTGTGTTCTTGCTTCACTGGCTGCTGTTAATATACTGTATTATCTAGTGTGCAGTTGGGCTTATGTACCCACAGTTGATCAACTATCCAATGTTTCTGACGAAAATAATTCAAATGAGAAAGTATTAATTCAATTGGGCAATATGAGCCAGGTAGATCTTAGTGAAGGATTTGGGTCAAATGAGAAAAGAGTTAACTAGATTTGACAATGAATAGGGGATCCTGTTGAAAAGGTATTCAAGATTAGTGAAAACAATGACTCAAAGGAGGAAAAGTTAACTGAACTACAGGTTCACAATAAAAAGGAAAAAGGAAGGATTTGTGCAGAAGACCCGATGATTGCCTAGTTGAGATGTTGAACTTAGTAAGACATACACTACTTGGATAGCCATATTTATATTTTCATGTTTTGATTAGTAGTAGATGCAGATATCAACAGGCTATTAATGTGTATCTGTAAACTGTAAGCTGTGTTGGTATGCCAATATGTATATTTGCTCCATAGTAAATTGTTATTCTAAAATGTTGCAAACGATACAATTTGATCTGAGAATACTCTCAGTGATCTTGAAATATACAGATAATTAAAACCACAGATGAAAAAAAAATGTTTTTTTAAGTATCCTCTGATTGATGAATTTCTAAAATGACAGTGGGGACTCTGGTGGCCACAGTAACCTTGTACCCAATGATCATTTCCACAGACGATATCCTTCCATGATTCCAAATATTATTGATTCATCGACTCAAAAAACTAG
>Glyma08g21810.1 sequence type=CDS gene model=Glyma08g21810 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGGAGGCAACAATGGAGAAGGAAATGGAGCTTTGTACAAGTGAAGTGGAAATGGCTTCTCAACACAGTCCACAACCACAGAAGAAAAAGGGTGGTATTGTTACCATGCCTTTCATCATGGCAAATGAAGCACTTGCAAGCGTGGCGAATATCGGTCTTCAGCCGAACATGATATTGTATTTGATGGGGAGTTACAGGTTTCATTTAGCCAAAGCAACTCAGGTGTTTCTGTTATCCTCTGCAACAAGCAATCTCACGCCACTCATAGGTGCTTTCATTGCTGATTCTTGTCTTGGTCGATTCCTAGCTGTTGGGTTAGGTTCTGCCATCTCTTTCCTGGGAATGGCACTCTTGTGTCTAACAGCGATGATCCCACAGTCTCGGCCTCCTCCTTGCAACCCTGCAACTGAAAGATGTAAACCAGCAACAGCTGGCCAAATGGCAATGTTAATCTCTTCCTTTGCTCTCATGTCGATTGGAAATGGTGGCCTTTCATGCTCCATCGCATTTGGCGCAGACCAGGTGAATAAAAAAGATAACCCCAACAACCAGAGGGCCTTAGAAACATTTTTCAGCTGGTATTATGCTTCTACAGCTTTTTCTGTCATAATTGCCCTCACAGTCATAGTATATATCCAAGATCATTTTGGATGGAAAGTAGGTTTTGGAGTTCCAGCAGCACTTATGTTCATGTCCACTTTCTTCTTCTTTCTTGCTTCTCCGCTTTATGTAAAGAATAAAATACAAGGCAGCTTAATCACTGGCTTAGCACAAGTAATTGTCGTGGCCTATAAGAACCGGAAGCTTCCTTTACCACCTAGGAACTCAGCTGAAATGTACCATCATAGGAAGGACTCTGATCTTGTTGTTCCTACTGACAAACTAAGGTTTCTGAATAAAGCTTGCATCATCAAAGATATAGCCTCTGATGGATCAGCTTCAAATCCGTGGAGTCTCTGCACAATAGATCAAGTGGAAGAACTAAAAGCTATTATTAAAGTTATTCCACTGTGGTCTACAGGGATCATGATGTCAGTTAACATTGGAGGCTCGTTTGGAATACTGCAAGCTAAATCCCTCAACAGACATATCACTTCACACTTTGAAATTCCAGCAGGTTCTTTTTCTGTAGTAATCGTATTTATGGTATTCATATGGGTGGCTCTTTATGATCGTGTCATTATTCCTATAGCATCAAAGCTCAGAGGCAAACCAGTTAGGATCAGTGCCAAGAGAAGAATGGGAATTGGGTTGGTTTTCTCTTTTCTCCACTTGGCAACTGCAGCTATTGTGGAGAATACAAGGCGAAGGAGAGCAATCAGGGAGGGACATATTGATGACACAAATGCAGTGTTGAATATGTCTGCAATGTGGCTTGTTCCTCAACTTTGCTTGTCAGGCATGGCTGAAGCATTCAATGCTATAGGCCAAAATGAGTTTTATTACACTGAGTTTCCAAGAACTATGTCAAGTATTGCTGCTTGCCTTTTTGGACTTGGAATGGCTGCAGGAAATGTGTTATCTAGTTTGATATTCAGCATCGTGGAAAATGTTACTTCAAGGGGAGGAAAGCAAGGATGGGTTTTAGATAATATTAACAAGGGTAGTTATGACAGGTACTACTGTGTTCTTGCTTCACTGGCTGCTGTTAATATACTGTATTATCTAGTGTGCAGTTGGGCTTATGTACCCACAGTTGATCAACTATCCAATGTTTCTGACGAAAATAATTCAAATGAGAAAGTATTAATTCAATTGGGCAATATGAGCCAGGTAGATCTTAGTGAAGGATTTGGGTCAAATGAGAAAAGAGTTAACTAG >Glyma08g21810.2 sequence type=CDS gene model=Glyma08g21810 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCACTCTTGTGTCTAACAGCGATGATCCCACAGTCTCGGCCTCCTCCTTGCAACCCTGCAACTGAAAGATGTAAACCAGCAACAGCTGGCCAAATGGCAATGTTAATCTCTTCCTTTGCTCTCATGTCGATTGGAAATGGTGGCCTTTCATGCTCCATCGCATTTGGCGCAGACCAGGTGAATAAAAAAGATAACCCCAACAACCAGAGGGCCTTAGAAACATTTTTCAGCTGGTATTATGCTTCTACAGCTTTTTCTGTCATAATTGCCCTCACAGTCATAGTATATATCCAAGATCATTTTGGATGGAAAGTAGGTTTTGGAGTTCCAGCAGCACTTATGTTCATGTCCACTTTCTTCTTCTTTCTTGCTTCTCCGCTTTATGTAAAGAATAAAATACAAGGCAGCTTAATCACTGGCTTAGCACAAGTAATTGTCGTGGCCTATAAGAACCGGAAGCTTCCTTTACCACCTAGGAACTCAGCTGAAATGTACCATCATAGGAAGGACTCTGATCTTGTTGTTCCTACTGACAAACTAAGGTTTCTGAATAAAGCTTGCATCATCAAAGATATAGCCTCTGATGGATCAGCTTCAAATCCGTGGAGTCTCTGCACAATAGATCAAGTGGAAGAACTAAAAGCTATTATTAAAGTTATTCCACTGTGGTCTACAGGGATCATGATGTCAGTTAACATTGGAGGCTCGTTTGGAATACTGCAAGCTAAATCCCTCAACAGACATATCACTTCACACTTTGAAATTCCAGCAGGTTCTTTTTCTGTAGTAATCGTATTTATGGTATTCATATGGGTGGCTCTTTATGATCGTGTCATTATTCCTATAGCATCAAAGCTCAGAGGCAAACCAGTTAGGATCAGTGCCAAGAGAAGAATGGGAATTGGGTTGGTTTTCTCTTTTCTCCACTTGGCAACTGCAGCTATTGTGGAGAATACAAGGCGAAGGAGAGCAATCAGGGAGGGACATATTGATGACACAAATGCAGTGTTGAATATGTCTGCAATGTGGCTTGTTCCTCAACTTTGCTTGTCAGGCATGGCTGAAGCATTCAATGCTATAGGCCAAAATGAGTTTTATTACACTGAGTTTCCAAGAACTATGTCAAGTATTGCTGCTTGCCTTTTTGGACTTGGAATGGCTGCAGGAAATGTGTTATCTAGTTTGATATTCAGCATCGTGGAAAATGTTACTTCAAGGGGAGGAAAGCAAGGATGGGTTTTAGATAATATTAACAAGGGTAGTTATGACAGGTACTACTGTGTTCTTGCTTCACTGGCTGCTGTTAATATACTGTATTATCTAGTGTGCAGTTGGGCTTATGTACCCACAGTTGATCAACTATCCAATGTTTCTGACGAAAATAATTCAAATGAGAAAGTATTAATTCAATTGGGCAATATGAGCCAGGTAGATCTTAGTGAAGGATTTGGGTCAAATGAGAAAAGAGTTAACTAG
>Glyma08g21810.1 sequence type=predicted peptide gene model=Glyma08g21810 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKEATMEKEMELCTSEVEMASQHSPQPQKKKGGIVTMPFIMANEALASVANIGLQPNMILYLMGSYRFHLAKATQVFLLSSATSNLTPLIGAFIADSCLGRFLAVGLGSAISFLGMALLCLTAMIPQSRPPPCNPATERCKPATAGQMAMLISSFALMSIGNGGLSCSIAFGADQVNKKDNPNNQRALETFFSWYYASTAFSVIIALTVIVYIQDHFGWKVGFGVPAALMFMSTFFFFLASPLYVKNKIQGSLITGLAQVIVVAYKNRKLPLPPRNSAEMYHHRKDSDLVVPTDKLRFLNKACIIKDIASDGSASNPWSLCTIDQVEELKAIIKVIPLWSTGIMMSVNIGGSFGILQAKSLNRHITSHFEIPAGSFSVVIVFMVFIWVALYDRVIIPIASKLRGKPVRISAKRRMGIGLVFSFLHLATAAIVENTRRRRAIREGHIDDTNAVLNMSAMWLVPQLCLSGMAEAFNAIGQNEFYYTEFPRTMSSIAACLFGLGMAAGNVLSSLIFSIVENVTSRGGKQGWVLDNINKGSYDRYYCVLASLAAVNILYYLVCSWAYVPTVDQLSNVSDENNSNEKVLIQLGNMSQVDLSEGFGSNEKRVN* >Glyma08g21810.2 sequence type=predicted peptide gene model=Glyma08g21810 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALLCLTAMIPQSRPPPCNPATERCKPATAGQMAMLISSFALMSIGNGGLSCSIAFGADQVNKKDNPNNQRALETFFSWYYASTAFSVIIALTVIVYIQDHFGWKVGFGVPAALMFMSTFFFFLASPLYVKNKIQGSLITGLAQVIVVAYKNRKLPLPPRNSAEMYHHRKDSDLVVPTDKLRFLNKACIIKDIASDGSASNPWSLCTIDQVEELKAIIKVIPLWSTGIMMSVNIGGSFGILQAKSLNRHITSHFEIPAGSFSVVIVFMVFIWVALYDRVIIPIASKLRGKPVRISAKRRMGIGLVFSFLHLATAAIVENTRRRRAIREGHIDDTNAVLNMSAMWLVPQLCLSGMAEAFNAIGQNEFYYTEFPRTMSSIAACLFGLGMAAGNVLSSLIFSIVENVTSRGGKQGWVLDNINKGSYDRYYCVLASLAAVNILYYLVCSWAYVPTVDQLSNVSDENNSNEKVLIQLGNMSQVDLSEGFGSNEKRVN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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