SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G16190 | AT | Annotation by Michelle Graham. TAIR10: Isochorismatase family protein | chr3:5489883-5491195 REVERSE LENGTH=196 | SoyBase | E_val: 3.00E-97 | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| KOG4003 | KOG | Pyrazinamidase/nicotinamidase PNC1 | JGI | ISS | |
| PTHR11080 | Panther | PYRAZINAMIDASE/NICOTINAMIDASE | JGI | ISS | |
| PF00857 | PFAM | Isochorismatase family | JGI | ISS | |
| UniRef100_F4YFC0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Isochorismatase hydrolase family protein n=1 Tax=Camellia sinensis RepID=F4YFC0_CAMSI | SoyBase | E_val: 1.00E-97 | ISS |
| UniRef100_I1KV55 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KV55_SOYBN | SoyBase | E_val: 1.00E-143 | ISS |
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Glyma08g21790 not represented in the dataset |
Glyma08g21790 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g203800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g21790.2 sequence type=transcript gene model=Glyma08g21790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AATTTAAGAGTTTCTTAGATTAACAATTATAAGAAACTCACATGACCTTAAAATCTATGATTCTCACATATAATAGATAATAGATAAATGATACTTTGATGTCTTAGAAGAGGAAAGAAACAAGATTTCATTCTTTTGACTATCATTTAAGGTTTCTTCTTGGTGCACTTTGATTTCTTGGAAGAGGAGAGAAACAAAATTTCACTCTCTTGACTATCATTTATGTTGGGGACCTTGTTTCAGGCTTCCGAACATGTAATTAATAAGATAATGCTACTATTGTTGATATAACTTTGTTGGTGGTGGTGATCCACGTTTTTTTCCTTCCCTCGTGTTGAAATATAGAAGGTAGAATGAAACCCTGCAGCCATTGCAGCCTGGTCAACTTTTGTGAGGTTGTTATATTATATATACTACCTCCACTCCACATTTCACGCTCCCATCACCCCCATTTATTTGAGTTGCTGATTGATGGTTCCTACTTTGGGGTTCATATATGTTTCAAGTTCTTGTGCAGAAACCTTTGTCACTGCACTCAAAATCTGCACTAGCTAGGTGGAACAGAAATGGCAGAGGATTGGAACCGCACGGCTCTTCTTGTGATCGATATGCAGAAAGATTTTATAGAAGATTGGAGTCCTGTGGCACTAAAAGGAGGGAAAGACATTGTCCCAAATGTGATTAAGGCCGTGGAAGTTGCCAGGCAGCGTGGCATTCTCATAGTTTGGGTAGTACGCGAAAATGATCCCTTAGGAAGAGATGTTGAGCTCTTTCGTCGGCATCATTATACAGCAGGGAAAGTTGGACCAGCCAATAAAGGAAGCGAAGGTGCAGAATTAGTTGATGGATTAGTAATTAAAGAAGGGGATTATAAACTTGTGAAGACCAGGTTTAGTGCATTCTTTGCTACACACCTTCATTCTGTCCTTCAAGGAGCAGGAATTAATAATCTGGTGGTCACTGGTGTTCAAACTCCAAACTGTATCAGGCAAACTGTCTTTGATGCTGTATCATTGGACTATCAACCTGTGACTGTTATTGTTGATGCTACAGCAGCAGCTACACCTGATGTTCATCAAGCCAATATGTTTGACATGAAAAACATTGGAGTTGCAACTCCAACATTACAAGAATGGAGCGAATCCAAAGCTTAATCTGTGGACCATGCAACTTTTAATTTGTACCTCGGGATGTTCGATTTCAAAGGTGTTGGTTGATGTTTTTGGCATGTTAAATTGTAACGTGAAGTGAACGTATATGTAATACTGCATTACCTGGTATTGTTGTTAGCTGCTCTGTAAAATGAATTTCGTTAATGATTTTTAAGAAATTTTAGTCAATAATAAAGTGTATTGTCTGTATTCTTCAATTTGAAAATGAAGTGAAACTCTTTTACTTCA
>Glyma08g21790.1 sequence type=CDS gene model=Glyma08g21790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGAGGATTGGAACCGCACGGCTCTTCTTGTGATCGATATGCAGAAAGATTTTATAGAAGATTGGAGTCCTGTGGCACTAAAAGGAGGGAAAGACATTGTCCCAAATGTGATTAAGGCCGTGGAAGTTGCCAGGCAGCGTGGCATTCTCATAGTTTGGGTAGTACGCGAAAATGATCCCTTAGGAAGAGATGTTGAGCTCTTTCGTCGGCATCATTATACAGCAGGGAAAGTTGGACCAGCCAATAAAGGAAGCGAAGGTGCAGAATTAGTTGATGGATTAGTAATTAAAGAAGGGGATTATAAACTTGTGAAGACCAGGTTTAGTGCATTCTTTGCTACACACCTTCATTCTGTCCTTCAAGGAGCAGGAATTAATAATCTGGTGGTCACTGCTTTATTTGTAGGTGTTCAAACTCCAAACTGTATCAGGCAAACTGTCTTTGATGCTGTATCATTGGACTATCAACCTGTGACTGTTATTGTTGATGCTACAGCAGCAGCTACACCTGATGTTCATCAAGCCAATATGTTTGACATGAAAAACATTGGAGTTGCAACTCCAACATTACAAGAATGGAGCGAATCCAAAGCTTAA >Glyma08g21790.2 sequence type=CDS gene model=Glyma08g21790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGAGGATTGGAACCGCACGGCTCTTCTTGTGATCGATATGCAGAAAGATTTTATAGAAGATTGGAGTCCTGTGGCACTAAAAGGAGGGAAAGACATTGTCCCAAATGTGATTAAGGCCGTGGAAGTTGCCAGGCAGCGTGGCATTCTCATAGTTTGGGTAGTACGCGAAAATGATCCCTTAGGAAGAGATGTTGAGCTCTTTCGTCGGCATCATTATACAGCAGGGAAAGTTGGACCAGCCAATAAAGGAAGCGAAGGTGCAGAATTAGTTGATGGATTAGTAATTAAAGAAGGGGATTATAAACTTGTGAAGACCAGGTTTAGTGCATTCTTTGCTACACACCTTCATTCTGTCCTTCAAGGAGCAGGAATTAATAATCTGGTGGTCACTGGTGTTCAAACTCCAAACTGTATCAGGCAAACTGTCTTTGATGCTGTATCATTGGACTATCAACCTGTGACTGTTATTGTTGATGCTACAGCAGCAGCTACACCTGATGTTCATCAAGCCAATATGTTTGACATGAAAAACATTGGAGTTGCAACTCCAACATTACAAGAATGGAGCGAATCCAAAGCTTAA
>Glyma08g21790.1 sequence type=predicted peptide gene model=Glyma08g21790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAEDWNRTALLVIDMQKDFIEDWSPVALKGGKDIVPNVIKAVEVARQRGILIVWVVRENDPLGRDVELFRRHHYTAGKVGPANKGSEGAELVDGLVIKEGDYKLVKTRFSAFFATHLHSVLQGAGINNLVVTALFVGVQTPNCIRQTVFDAVSLDYQPVTVIVDATAAATPDVHQANMFDMKNIGVATPTLQEWSESKA* >Glyma08g21790.2 sequence type=predicted peptide gene model=Glyma08g21790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAEDWNRTALLVIDMQKDFIEDWSPVALKGGKDIVPNVIKAVEVARQRGILIVWVVRENDPLGRDVELFRRHHYTAGKVGPANKGSEGAELVDGLVIKEGDYKLVKTRFSAFFATHLHSVLQGAGINNLVVTGVQTPNCIRQTVFDAVSLDYQPVTVIVDATAAATPDVHQANMFDMKNIGVATPTLQEWSESKA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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