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Report for Sequence Feature Glyma08g21781

Feature Type:gene_model
Chromosome:Gm08
Start:16586893
stop:16589450
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g21781
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G16190AT Annotation by Michelle Graham. TAIR10: Isochorismatase family protein | chr3:5489883-5491195 REVERSE LENGTH=196 SoyBaseE_val: 6.00E-67ISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
PTHR11080Panther PYRAZINAMIDASE/NICOTINAMIDASE JGI ISS
PF00857PFAM Isochorismatase family JGI ISS
UniRef100_E4MVU4UniRef Annotation by Michelle Graham. Most informative UniRef hit: mRNA, clone: RTFL01-01-I24 n=1 Tax=Eutrema halophilum RepID=E4MVU4_THEHA SoyBaseE_val: 2.00E-66ISS
UniRef100_UPI0002338C9FUniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002338C9F related cluster n=1 Tax=unknown RepID=UPI0002338C9F SoyBaseE_val: 6.00E-154ISS

Expression Patterns of Glyma08g21781
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g21781 not represented in the dataset
Glyma08g21781 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g21781
ParalogEvidenceComments
Glyma07g02130 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g21781 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g203700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g21781
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g21781
>Glyma08g21781.1   sequence type=CDS   gene model=Glyma08g21781   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTCAAAACTGCAGTTTGGTCCACTTTTGTGAGACCGCAATATAAACCTGCACATTTCAATCTCTTACCCCTTCCATTTCTGAAGCTGAATTCATCCAATTGGAGCTTTCGTGGGACCAACACAGTACATAACAAGCGACCCAATTGGCCAAAGCCTTTGTCACTGCGCTCAAAATCTGCTCTTGCTGTTGCTGGAGCTGACCCTTTGGAAATGGCAGAGGATTGGAACCGCACAGCCCTTCTTGTGATCGACATGCAGAAAGATTTTATAGAAGATGGGAGACCCATGCTAGTAAAAGGAGGCAAATACATTGTCCCAAATGTTATTAAGGCTGTGGATGTTGCTAGGCAGCGTGGAATTCTCATAGTTTGGGTAGTACGGGAACATGATCCCTTAGGAACAGATGTTGAGCTCTTTCGTCGGCATCATTATGCAGCAGGGAAAGTTGGTCCAACTTCTAAAGGAAGTGAAGTTAAATCTGTAGGTGTTCAAACTCCGAACTGCATTAGGCAAACTGTGTGTGATGCCGTAGCATTGGACTATCAGCCGGTAACTGTTATTGTTGATGCTACAGCAGCAGCCACACCTGATATTCATCTCGCCAATGTGTTTGACATGAAAAATATTGGAGTTGCAACCCCAACATTACAAGAATGGAGCGAACCCAAAGTTTGA
Predicted protein sequences of Glyma08g21781
>Glyma08g21781.1   sequence type=predicted peptide   gene model=Glyma08g21781   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVKTAVWSTFVRPQYKPAHFNLLPLPFLKLNSSNWSFRGTNTVHNKRPNWPKPLSLRSKSALAVAGADPLEMAEDWNRTALLVIDMQKDFIEDGRPMLVKGGKYIVPNVIKAVDVARQRGILIVWVVREHDPLGTDVELFRRHHYAAGKVGPTSKGSEVKSVGVQTPNCIRQTVCDAVALDYQPVTVIVDATAAATPDIHLANVFDMKNIGVATPTLQEWSEPKV*






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