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Report for Sequence Feature Glyma08g21760

Feature Type:gene_model
Chromosome:Gm08
Start:16556669
stop:16561141
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g21760
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G79810AT Annotation by Michelle Graham. TAIR10: Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein | chr1:30019944-30022156 FORWARD LENGTH=333 SoyBaseE_val: 0ISS
GO:0006635GO-bp Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation SoyBaseN/AISS
GO:0006869GO-bp Annotation by Michelle Graham. GO Biological Process: lipid transport SoyBaseN/AISS
GO:0006888GO-bp Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport SoyBaseN/AISS
GO:0006891GO-bp Annotation by Michelle Graham. GO Biological Process: intra-Golgi vesicle-mediated transport SoyBaseN/AISS
GO:0007031GO-bp Annotation by Michelle Graham. GO Biological Process: peroxisome organization SoyBaseN/AISS
GO:0009640GO-bp Annotation by Michelle Graham. GO Biological Process: photomorphogenesis SoyBaseN/AISS
GO:0010351GO-bp Annotation by Michelle Graham. GO Biological Process: lithium ion transport SoyBaseN/AISS
GO:0016558GO-bp Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix SoyBaseN/AISS
GO:0044265GO-bp Annotation by Michelle Graham. GO Biological Process: cellular macromolecule catabolic process SoyBaseN/AISS
GO:0005777GO-cc Annotation by Michelle Graham. GO Cellular Compartment: peroxisome SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
KOG2879 KOG Predicted E3 ubiquitin ligase JGI ISS
PTHR12590Panther PEROXISOMAL PROTEIN RELATED JGI ISS
PF00097PFAM Zinc finger, C3HC4 type (RING finger) JGI ISS
PF04757PFAM Pex2 / Pex12 amino terminal region JGI ISS
UniRef100_G7LFV7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Peroxisome assembly protein n=1 Tax=Medicago truncatula RepID=G7LFV7_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1KV48UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KV48_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g21760
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g21760
ParalogEvidenceComments
Glyma07g02110 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g21760 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g203400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g21760
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma08g21760
>Glyma08g21760.3   sequence type=transcript   gene model=Glyma08g21760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CACTGAATTGAAAAGTTAGATTCCGTGACATGGTGAAATGTAATGCAACAACAGTGCTGCCCCTAATGACCAGAACATCCTAATCTCTCTTTCTCTCTCTAAACTAAACAGTAGGGGTAGAGAGAGAGAAAGAGAGAAGAAGCGGTGCATGGACACACCAAACCAAACCAAAATCATCATCATCATCACGCAATGACTCTCCCTTCACACGATGCTTGGATTCACACTTCACACACACTCCTCCCCAGATGGAAATCTCTTTCCCTCCCTCATCAGTCAACTCTTCCAATTTCTATATCAAGAGTTAACCAAGTTGATGCAGCGAGATTGGACGTTGAAATGTCAGCCATGTTGAAAGAACAGTTGGTTAAAGTGTTCTCATTAATGAAGGAATGTTATTTCAGTATGAAGCCGAGCTTGATGCTTTCCTTGAGTTTCTTATTTGGAGGTTCTCAATTTGGGTGGATAAGCCAACCCCAGGCATTGCTCTCATGAACCTGAGGTACAGAGACGAGCGTGCAGTAGAACCAAGAGATAAAGTCCGAACTGGTCTGGAGGGACCTGGACTCACTGTTGCTCAGAAGCTTTGGTATTGTATTGCCACTGTTGGTGGTCAGTATATATGGGCTCGCTTACAATCCTTCTCTGCTTTTCGTAGATGGGGTGATACTGAGCAGAGACCATTGGCTAGACGTTTATGGATCTTGATACAACGGATAGAAGGAATATATAGAGCTGCTTCATTTGGAAACCTGTTGATATTTCTTTGCACTGGAAGATATCGAAATCTTATTGAAAGAGCCTTACGAGCTAGGCTTGTATATGGAAGCCCGAATATGAATCGTGCTGTTAGCTTTGAATATATGAACCGGCAATTAGTTTGGAATGAATTTTCGGAAATGTTATTGTTGCTTCTCCCCCTTCTTAATTCATCATCCGTGAAAAATCTCCTTCGACCTTTTTCTAAAGATAAATCATTAAGTTCAGCTGAGGATGGCTCAGCATGTCCCATTTGTCAGGCTACTCCCACAATTCCTTATGTTGCTCTACCTTGCCAGCACAGATATTGTTACTACTGTCTTAGGACACGATGTGCTGCTGCTCCATCGTTTAGGTGTTCCAGGTGCAGTGAGCCCGTTGTTGCTATGCAACGACATGGTGGTGTCCCTTCAGAATGATTGATTGTTACTAAGAATCAGGGAAACATTCTTTAGAGTTAGGGAGCATTTGATCTACTTACAGAATTAGCATATAAAATACTACCTGAAATTGTGGTGGTATTCTTTTCCCCTTACTTTCTCTTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTCACATTTAATTGGGAAAACAAATCAAAATATCTTCACAGAATCACTTACTCGGTTCAGTGGGAAGCATTCTTTCCCTTGTAACAATGTATCATTTAGTTACCCCCTCATACATTTCTTTCCGTTATTTTGAAGTTAAACTTCTTGTAAATTGTATGTGTTGTGATTGGATATACATACTAAACGATTAGCTCTCCTATAAACTAAAAAGCTAAGCTATTAAAAGGGGCAGAATATCATTCTGTGTGTACTTGGAACTAGACTGATTTCAATCAACGGCCGAAATTATAATTAATATATTTGATTTTATTTATTATATTTTCCCGT

>Glyma08g21760.4   sequence type=transcript   gene model=Glyma08g21760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CACTGAATTGAAAAGTTAGATTCCGTGACATGGTGAAATGTAATGCAACAACAGTGCTGCCCCTAATGACCAGAACATCCTAATCTCTCTTTCTCTCTCTAAACTAAACAGTAGGGGTAGAGAGAGAGAAAGAGAGAAGAAGCGGTGCATGGACACACCAAACCAAACCAAAATCATCATCATCATCACGCAATGACTCTCCCTTCACACGATGCTTGGATTCACACTTCACACACACTCCTCCCCAGATGGAAATCTCTTTCCCTCCCTCATCAGCAGTCAACTCTTCCAATTTCTATATCAAGAGTTAACCAAGTTGATGCAGCGAGATTGGACGTTGAAATGTCAGCCATGTTGAAAGAACAGTTGGTTAAAGTGTTCTCATTAATGAAGCCAGGAATGTTATTTCAGTATGAAGCCGAGCTTGATGCTTTCCTTGAGTTTCTTATTTGGAGGTTCTCAATTTGGGTGGATAAGCCAACCCCAGGCATTGCTCTCATGAACCTGAGGTACAGAGACGAGCGTGCAGTAGAACCAAGAGATAAAGTCCGAACTGGTCTGGAGGGACCTGGACTCACTGTTGCTCAGAAGCTTTGGTATTGTATTGCCACTGTTGGTGGTCAGTATATATGGGCTCGCTTACAATCCTTCTCTGCTTTTCGTAGATGGGGTGATACTGAGCAGAGACCATTGGCTAGACGTTTATGGATCTTGATACAACGGATAGAAGGAATATATAGAGCTGCTTCATTTGGAAACCTGTTGATATTTCTTTGCACTGGAAGATATCGAAATCTTATTGAAAGAGCCTTACGAGCTAGGCTTGTATATGGAAGCCCGAATATGAATCGTGCTGTTAGCTTTGAATATATGAACCGGCAATTAGTTTGGAATGAATTTTCGGTACTTCTTCCTCTCTTCATTTTTTACTTAATTTGTGGAATCATATTGGTCACATGAGACCTTTCATTTATTTACTAGTTAAGACAAATGAATGTAAAAATGGGCATAGCTGACTGAATGTTATAGGACCGCAAAGCCCATAACCCTTAGGGCCCCTAAATCTCTTCAGGTTTACACTGGAAGGCCCAAGAATAGTTAGGGCCCTATATTCACTTGGGCAGGAAATGACTAAAAATGGAGGGGAACTAATTATACATCTGTTATATAGGAATGGGAGATA
Coding sequences of Glyma08g21760
>Glyma08g21760.1   sequence type=CDS   gene model=Glyma08g21760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTCTCCCTTCACACGATGCTTGGATTCACACTTCACACACACTCCTCCCCAGATGGAAATCTCTTTCCCTCCCTCATCAGCAGTCAACTCTTCCAATTTCTATATCAAGAGTTAACCAAGTTGATGCAGCGAGATTGGACGTTGAAATGTCAGCCATGTTGAAAGAACAGTTGGTTAAAGTGTTCTCATTAATGAAGCCAGGAATGTTATTTCAGTATGAAGCCGAGCTTGATGCTTTCCTTGAGTTTCTTATTTGGAGGTTCTCAATTTGGGTGGATAAGCCAACCCCAGGCATTGCTCTCATGAACCTGAGGTACAGAGACGAGCGTGCAGTAGAACCAAGAGATAAAGTCCGAACTGGTCTGGAGGGACCTGGACTCACTGTTGCTCAGAAGCTTTGGTATTGTATTGCCACTGTTGGTGGTCAGTATATATGGGCTCGCTTACAATCCTTCTCTGCTTTTCGTAGATGGGGTGATACTGAGCAGAGACCATTGGCTAGACGTTTATGGATCTTGATACAACGGATAGAAGGAATATATAGAGCTGCTTCATTTGGAAACCTGTTGATATTTCTTTGCACTGGAAGATATCGAAATCTTATTGAAAGAGCCTTACGAGCTAGGCTTGTATATGGAAGCCCGAATATGAATCGTGCTGTTAGCTTTGAATATATGAACCGGCAATTAGTTTGGAATGAATTTTCGGAAATGTTATTGTTGCTTCTCCCCCTTCTTAATTCATCATCCGTGAAAAATCTCCTTCGACCTTTTTCTAAAGATAAATCATTAAGTTCAGCTGAGGATGGCTCAGCATGTCCCATTTGTCAGGCTACTCCCACAATTCCTTATGTTGCTCTACCTTGCCAGCACAGATATTGTTACTACTGTCTTAGGACACGATGTGCTGCTGCTCCATCGTTTAGGTGTTCCAGGTGCAGTGAGCCCGTTGTTGCTATGCAACGACATGGTGGTGTCCCTTCAGAATGA

>Glyma08g21760.3   sequence type=CDS   gene model=Glyma08g21760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTATTTCAGTATGAAGCCGAGCTTGATGCTTTCCTTGAGTTTCTTATTTGGAGGTTCTCAATTTGGGTGGATAAGCCAACCCCAGGCATTGCTCTCATGAACCTGAGGTACAGAGACGAGCGTGCAGTAGAACCAAGAGATAAAGTCCGAACTGGTCTGGAGGGACCTGGACTCACTGTTGCTCAGAAGCTTTGGTATTGTATTGCCACTGTTGGTGGTCAGTATATATGGGCTCGCTTACAATCCTTCTCTGCTTTTCGTAGATGGGGTGATACTGAGCAGAGACCATTGGCTAGACGTTTATGGATCTTGATACAACGGATAGAAGGAATATATAGAGCTGCTTCATTTGGAAACCTGTTGATATTTCTTTGCACTGGAAGATATCGAAATCTTATTGAAAGAGCCTTACGAGCTAGGCTTGTATATGGAAGCCCGAATATGAATCGTGCTGTTAGCTTTGAATATATGAACCGGCAATTAGTTTGGAATGAATTTTCGGAAATGTTATTGTTGCTTCTCCCCCTTCTTAATTCATCATCCGTGAAAAATCTCCTTCGACCTTTTTCTAAAGATAAATCATTAAGTTCAGCTGAGGATGGCTCAGCATGTCCCATTTGTCAGGCTACTCCCACAATTCCTTATGTTGCTCTACCTTGCCAGCACAGATATTGTTACTACTGTCTTAGGACACGATGTGCTGCTGCTCCATCGTTTAGGTGTTCCAGGTGCAGTGAGCCCGTTGTTGCTATGCAACGACATGGTGGTGTCCCTTCAGAATGA

>Glyma08g21760.4   sequence type=CDS   gene model=Glyma08g21760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTCTCCCTTCACACGATGCTTGGATTCACACTTCACACACACTCCTCCCCAGATGGAAATCTCTTTCCCTCCCTCATCAGCAGTCAACTCTTCCAATTTCTATATCAAGAGTTAACCAAGTTGATGCAGCGAGATTGGACGTTGAAATGTCAGCCATGTTGAAAGAACAGTTGGTTAAAGTGTTCTCATTAATGAAGCCAGGAATGTTATTTCAGTATGAAGCCGAGCTTGATGCTTTCCTTGAGTTTCTTATTTGGAGGTTCTCAATTTGGGTGGATAAGCCAACCCCAGGCATTGCTCTCATGAACCTGAGGTACAGAGACGAGCGTGCAGTAGAACCAAGAGATAAAGTCCGAACTGGTCTGGAGGGACCTGGACTCACTGTTGCTCAGAAGCTTTGGTATTGTATTGCCACTGTTGGTGGTCAGTATATATGGGCTCGCTTACAATCCTTCTCTGCTTTTCGTAGATGGGGTGATACTGAGCAGAGACCATTGGCTAGACGTTTATGGATCTTGATACAACGGATAGAAGGAATATATAGAGCTGCTTCATTTGGAAACCTGTTGATATTTCTTTGCACTGGAAGATATCGAAATCTTATTGAAAGAGCCTTACGAGCTAGGCTTGTATATGGAAGCCCGAATATGAATCGTGCTGTTAGCTTTGAATATATGAACCGGCAATTAGTTTGGAATGAATTTTCGGTACTTCTTCCTCTCTTCATTTTTTACTTAATTTGTGGAATCATATTGGTCACATGA
Predicted protein sequences of Glyma08g21760
>Glyma08g21760.1   sequence type=predicted peptide   gene model=Glyma08g21760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTLPSHDAWIHTSHTLLPRWKSLSLPHQQSTLPISISRVNQVDAARLDVEMSAMLKEQLVKVFSLMKPGMLFQYEAELDAFLEFLIWRFSIWVDKPTPGIALMNLRYRDERAVEPRDKVRTGLEGPGLTVAQKLWYCIATVGGQYIWARLQSFSAFRRWGDTEQRPLARRLWILIQRIEGIYRAASFGNLLIFLCTGRYRNLIERALRARLVYGSPNMNRAVSFEYMNRQLVWNEFSEMLLLLLPLLNSSSVKNLLRPFSKDKSLSSAEDGSACPICQATPTIPYVALPCQHRYCYYCLRTRCAAAPSFRCSRCSEPVVAMQRHGGVPSE*

>Glyma08g21760.3   sequence type=predicted peptide   gene model=Glyma08g21760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLFQYEAELDAFLEFLIWRFSIWVDKPTPGIALMNLRYRDERAVEPRDKVRTGLEGPGLTVAQKLWYCIATVGGQYIWARLQSFSAFRRWGDTEQRPLARRLWILIQRIEGIYRAASFGNLLIFLCTGRYRNLIERALRARLVYGSPNMNRAVSFEYMNRQLVWNEFSEMLLLLLPLLNSSSVKNLLRPFSKDKSLSSAEDGSACPICQATPTIPYVALPCQHRYCYYCLRTRCAAAPSFRCSRCSEPVVAMQRHGGVPSE*

>Glyma08g21760.4   sequence type=predicted peptide   gene model=Glyma08g21760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTLPSHDAWIHTSHTLLPRWKSLSLPHQQSTLPISISRVNQVDAARLDVEMSAMLKEQLVKVFSLMKPGMLFQYEAELDAFLEFLIWRFSIWVDKPTPGIALMNLRYRDERAVEPRDKVRTGLEGPGLTVAQKLWYCIATVGGQYIWARLQSFSAFRRWGDTEQRPLARRLWILIQRIEGIYRAASFGNLLIFLCTGRYRNLIERALRARLVYGSPNMNRAVSFEYMNRQLVWNEFSVLLPLFIFYLICGIILVT*






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