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Report for Sequence Feature Glyma08g21550

Feature Type:gene_model
Chromosome:Gm08
Start:16387228
stop:16389368
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g21550
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G79760AT Annotation by Michelle Graham. TAIR10: downstream target of AGL15-4 | chr1:30012054-30013042 FORWARD LENGTH=299 SoyBaseE_val: 6.00E-52ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG0143 KOG Iron/ascorbate family oxidoreductases JGI ISS
PTHR10209Panther FE(II)/ ASCORBATE OXIDASE SUPERFAMILY JGI ISS
PTHR10209:SF55Panther OXIDOREDUCTASE, 2OG-FE(II) OXYGENASE FAMILY PROTEI JGI ISS
UniRef100_G7LGM7UniRef Annotation by Michelle Graham. Most informative UniRef hit: 1-aminocyclopropane-1-carboxylate oxidase n=1 Tax=Medicago truncatula RepID=G7LGM7_MEDTR SoyBaseE_val: 1.00E-166ISS
UniRef100_I1KV25UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KV25_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g21550
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g21550
ParalogEvidenceComments
Glyma07g01870 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g21550 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g201400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g21550
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g21550
>Glyma08g21550.1   sequence type=CDS   gene model=Glyma08g21550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAATCGCCATTAACGCCAATGCCGGATATCACCGTCGATTTCCGCGCTCCACCTCCCTCTCCGGTGGCTTCCGGCCGGAGTTCCACCGTCACCAACGACGACGTTTTGACGGAGTTTTTAGAGGCCTCGCTCCGCGTCCCCGATCTTGTATTGCCCGACAAGATCTTCCCCAAACAGAACCACCTCGAAGCACCTCCCGAGGTTGATTTCGTCTCCCTCTGCTTTCACTGCGACGACGCTCTCCGCGACATCGTTTCCGACTCGCTGGCCAGAATCGGATGCTTCCAGCTTCTCAACCACGGAATTCCATTACAGCTCATGACCGCGGTCGCGGAGGCCGCCGCCGGAATCTTTCAAGTGCCACCAGCGAATAGAGTGTCGGCCACAAGGTCGCCGGAGAAGCCCTGGGGGTTCGAGGAGTATCACGCTGGAGAGGAAGAAGGCGATGGGAGTGAAGAATTCGTGTGGTGCAACGACCACGAGTTGAAGTCAAAAATGGATGGAATTTGGCCAATTGGATATCCAAATTTCAGTGAGAAGATGGAAAAGCTGAAGTCACGCATAGAGATGGTGGGTAGGAAAATGTTGGGTGTGATATTGAAGAAGGGGAGCATAGAATTTGTGGGTAGTGGGCATGAGGTTGGGACACTTTGCTGTGTTTACAAGCATCGAAGAGATGATCATAGCATTAGCAGCTCGTTGAAATATGATGTGATTAGAATGCTGATTAGGGGAACCGATTACTCCCATTCATTGTGCTTCCATGTTTGTAATGGATCTTCACAGTTTCACGTTTACTCCAAGAAAAGTTGGCTCTCTTTCTTCCCTCAGCCAGGTGCCCTTATTGTCACCGCTGGAGATCAAACCCAGACATTCAGTGGTGGAGAGTACAAGCACGTGATTGGAAGGCCAATCTTTAAAGGAGAGAAAGAAGAGACCATTTCAATGGCTTTCCTCTATTCTACTCAAACCACCAAGGACAATTTTCAAACCAGTAGGGGAAGAACTATTTCACTTGGCCAGCAAGCCATCTTGGCTTTAATTCTGCCCCTTGTGTACCATGTCATCAATTTTTTCTACAAAAAACTTAATTAA
Predicted protein sequences of Glyma08g21550
>Glyma08g21550.1   sequence type=predicted peptide   gene model=Glyma08g21550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQSPLTPMPDITVDFRAPPPSPVASGRSSTVTNDDVLTEFLEASLRVPDLVLPDKIFPKQNHLEAPPEVDFVSLCFHCDDALRDIVSDSLARIGCFQLLNHGIPLQLMTAVAEAAAGIFQVPPANRVSATRSPEKPWGFEEYHAGEEEGDGSEEFVWCNDHELKSKMDGIWPIGYPNFSEKMEKLKSRIEMVGRKMLGVILKKGSIEFVGSGHEVGTLCCVYKHRRDDHSISSSLKYDVIRMLIRGTDYSHSLCFHVCNGSSQFHVYSKKSWLSFFPQPGALIVTAGDQTQTFSGGEYKHVIGRPIFKGEKEETISMAFLYSTQTTKDNFQTSRGRTISLGQQAILALILPLVYHVINFFYKKLN*






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