Report for Sequence Feature Glyma08g21550
Feature Type: gene_model
Chromosome: Gm08
Start: 16387228
stop: 16389368
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g21550
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G79760 AT
Annotation by Michelle Graham. TAIR10: downstream target of AGL15-4 | chr1:30012054-30013042 FORWARD LENGTH=299
SoyBase E_val: 6.00E-52 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
KOG0143
KOG
Iron/ascorbate family oxidoreductases
JGI ISS
PTHR10209 Panther
FE(II)/ ASCORBATE OXIDASE SUPERFAMILY
JGI ISS
PTHR10209:SF55 Panther
OXIDOREDUCTASE, 2OG-FE(II) OXYGENASE FAMILY PROTEI
JGI ISS
UniRef100_G7LGM7 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: 1-aminocyclopropane-1-carboxylate oxidase n=1 Tax=Medicago truncatula RepID=G7LGM7_MEDTR
SoyBase E_val: 1.00E-166 ISS
UniRef100_I1KV25 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KV25_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g21550
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma08g21550
Paralog Evidence Comments
Glyma07g01870 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g21550 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g201400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g21550
Coding sequences of Glyma08g21550
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g21550.1 sequence type=CDS gene model=Glyma08g21550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCAATCGCCATTAACGCCAATGCCGGATATCACCGTCGATTTCCGCGCTCCACCTCCCTCTCCGGTGGCTTCCGGCCGGAGTTCCACCGTCACCAACGACGACGTTTTGACGGAGTTTTTAGAGGCCTCGCTCCGCGTCCCCGATCTTGTATTGCCCGACAAGATCTTCCCCAAACAGAACCACCTCGAAGCACCTCCCGAGGTTGATTTCGTCTCCCTCTGCTTTCACTGCGACGACGCTCTCCGCGACATCGTTTCCGACTCGCTGGCCAGAATCGGATGCTTCCAGCTTCTCAACCACGGAATTCCATTACAGCTCATGACCGCGGTCGCGGAGGCCGCCGCCGGAATCTTTCAAGTGCCACCAGCGAATAGAGTGTCGGCCACAAGGTCGCCGGAGAAGCCCTGGGGGTTCGAGGAGTATCACGCTGGAGAGGAAGAAGGCGATGGGAGTGAAGAATTCGTGTGGTGCAACGACCACGAGTTGAAGTCAAAAATGGATGGAATTTGGCCAATTGGATATCCAAATTTCAGTGAGAAGATGGAAAAGCTGAAGTCACGCATAGAGATGGTGGGTAGGAAAATGTTGGGTGTGATATTGAAGAAGGGGAGCATAGAATTTGTGGGTAGTGGGCATGAGGTTGGGACACTTTGCTGTGTTTACAAGCATCGAAGAGATGATCATAGCATTAGCAGCTCGTTGAAATATGATGTGATTAGAATGCTGATTAGGGGAACCGATTACTCCCATTCATTGTGCTTCCATGTTTGTAATGGATCTTCACAGTTTCACGTTTACTCCAAGAAAAGTTGGCTCTCTTTCTTCCCTCAGCCAGGTGCCCTTATTGTCACCGCTGGAGATCAAACCCAGACATTCAGTGGTGGAGAGTACAAGCACGTGATTGGAAGGCCAATCTTTAAAGGAGAGAAAGAAGAGACCATTTCAATGGCTTTCCTCTATTCTACTCAAACCACCAAGGACAATTTTCAAACCAGTAGGGGAAGAACTATTTCACTTGGCCAGCAAGCCATCTTGGCTTTAATTCTGCCCCTTGTGTACCATGTCATCAATTTTTTCTACAAAAAACTTAATTAA
Predicted protein sequences of Glyma08g21550
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g21550.1 sequence type=predicted peptide gene model=Glyma08g21550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MQSPLTPMPDITVDFRAPPPSPVASGRSSTVTNDDVLTEFLEASLRVPDLVLPDKIFPKQNHLEAPPEVDFVSLCFHCDDALRDIVSDSLARIGCFQLLNHGIPLQLMTAVAEAAAGIFQVPPANRVSATRSPEKPWGFEEYHAGEEEGDGSEEFVWCNDHELKSKMDGIWPIGYPNFSEKMEKLKSRIEMVGRKMLGVILKKGSIEFVGSGHEVGTLCCVYKHRRDDHSISSSLKYDVIRMLIRGTDYSHSLCFHVCNGSSQFHVYSKKSWLSFFPQPGALIVTAGDQTQTFSGGEYKHVIGRPIFKGEKEETISMAFLYSTQTTKDNFQTSRGRTISLGQQAILALILPLVYHVINFFYKKLN*